Wall clock time and date at job start Wed Apr 15 2020 11:43:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46498 * 109.46793 * 2 1 4 4 C 1.36881 * 126.39751 * 264.97407 * 3 2 1 5 5 C 1.34668 * 106.81875 * 180.02562 * 4 3 2 6 6 N 1.34134 * 108.01972 * 359.97438 * 5 4 3 7 7 C 1.30501 * 109.25535 * 0.02562 * 6 5 4 8 8 C 1.50692 * 125.64779 * 179.97438 * 7 6 5 9 9 H 1.09002 * 109.47306 * 180.02562 * 8 7 6 10 10 C 1.47194 * 109.47384 * 300.02432 * 8 7 6 11 11 N 5.07300 * 120.74155 * 63.41057 * 2 1 3 12 12 C 1.50708 * 109.47228 * 60.02544 * 8 7 6 13 13 O 1.20753 * 119.99696 * 335.00297 * 12 8 7 14 14 C 1.50703 * 119.99849 * 154.99843 * 12 8 7 15 15 S 1.80997 * 109.46841 * 180.02562 * 14 12 8 16 16 C 1.76195 * 99.99870 * 179.97438 * 15 14 12 17 17 H 1.08000 * 120.00490 * 359.97438 * 16 15 14 18 18 C 1.38806 * 119.99846 * 180.02562 * 16 15 14 19 19 N 1.31623 * 120.00120 * 359.97438 * 18 16 15 20 20 Si 1.86804 * 119.99786 * 180.02562 * 18 16 15 21 21 H 1.48494 * 109.47167 * 89.99816 * 20 18 16 22 22 H 1.48507 * 109.46933 * 209.99581 * 20 18 16 23 23 H 1.48503 * 109.47233 * 329.99516 * 20 18 16 24 24 H 1.08997 * 109.47293 * 59.99744 * 1 2 3 25 25 H 1.09006 * 109.46762 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.47082 * 299.99628 * 1 2 3 27 27 H 1.08996 * 109.47082 * 240.00372 * 2 1 3 28 28 H 1.08997 * 109.47293 * 120.00256 * 2 1 3 29 29 H 1.08003 * 126.59103 * 359.97438 * 4 3 2 30 30 H 1.08001 * 125.99672 * 180.02562 * 5 4 3 31 31 H 1.09005 * 109.46894 * 300.00155 * 14 12 8 32 32 H 1.08992 * 109.47187 * 59.99942 * 14 12 8 33 33 H 0.97006 * 120.00235 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3800 2.1149 -1.0975 5 6 2.7661 3.3241 -0.6480 6 7 2.6430 3.3289 0.6877 7 6 2.1958 2.1684 1.0829 8 6 1.9228 1.7722 2.5109 9 1 1.5575 0.7457 2.5398 10 6 3.1650 1.8731 3.2941 11 7 4.1232 1.9516 3.8990 12 6 0.8831 2.6921 3.0975 13 8 0.7365 3.8028 2.6470 14 6 0.0262 2.2256 4.2461 15 16 -1.1166 3.5463 4.7214 16 6 -1.9693 2.7520 6.0430 17 1 -1.7112 1.7411 6.3220 18 6 -2.9737 3.4251 6.7247 19 7 -3.2888 4.6569 6.3843 20 14 -3.8773 2.5833 8.1263 21 1 -3.1707 2.8537 9.4040 22 1 -5.2643 3.1079 8.2069 23 1 -3.9154 1.1190 7.8819 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 2.3604 1.7867 -2.1263 30 1 3.1133 4.1463 -1.2562 31 1 -0.5415 1.3462 3.9422 32 1 0.6622 1.9722 5.0943 33 1 -3.9904 5.1275 6.8610 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001520036875.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:26 Heat of formation + Delta-G solvation = 35.093883 kcal Electronic energy + Delta-G solvation = -18640.088771 eV Core-core repulsion = 15600.060169 eV Total energy + Delta-G solvation = -3040.028602 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 279.078 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -43.24667 -40.63705 -37.86242 -35.91529 -34.56945 -33.88783 -31.24845 -30.90799 -28.58765 -27.62075 -24.61181 -22.63099 -22.11354 -21.32910 -19.79137 -18.85677 -18.20230 -17.30788 -16.86257 -16.58806 -16.26314 -15.91693 -15.71146 -15.36031 -14.87997 -14.74333 -14.53630 -14.43143 -14.14255 -13.90042 -13.47132 -13.43519 -13.23254 -13.09238 -12.88486 -12.82907 -12.58984 -12.13401 -11.74326 -11.12842 -10.99060 -10.83329 -10.58830 -10.27868 -9.42223 -8.67315 -8.33384 -6.11654 0.59787 0.86173 1.22764 1.35449 1.44069 1.45606 1.54155 1.65308 1.88697 2.11988 2.27753 2.64127 2.89883 3.01944 3.10535 3.37731 3.64000 3.85545 4.07732 4.15855 4.19831 4.32039 4.47097 4.53317 4.56727 4.69364 4.86539 4.92468 5.31854 5.34744 5.44893 5.81029 6.10563 6.22007 6.23840 6.32538 7.08863 7.12537 8.75836 Molecular weight = 279.08amu Principal moments of inertia in cm(-1) A = 0.024225 B = 0.004232 C = 0.004110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1155.573424 B = 6614.196888 C = 6810.319920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.084 3.916 3 N -0.439 5.439 4 C -0.017 4.017 5 C -0.066 4.066 6 N -0.504 5.504 7 C 0.175 3.825 8 C 0.073 3.927 9 H 0.203 0.797 10 C 0.242 3.758 11 N -0.434 5.434 12 C 0.384 3.616 13 O -0.424 6.424 14 C -0.157 4.157 15 S -0.167 6.167 16 C -0.540 4.540 17 H 0.088 0.912 18 C 0.014 3.986 19 N -0.912 5.912 20 Si 0.996 3.004 21 H -0.272 1.272 22 H -0.280 1.280 23 H -0.253 1.253 24 H 0.056 0.944 25 H 0.105 0.895 26 H 0.049 0.951 27 H 0.129 0.871 28 H 0.116 0.884 29 H 0.222 0.778 30 H 0.181 0.819 31 H 0.139 0.861 32 H 0.115 0.885 33 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.920 -16.441 -15.834 24.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.036 4.036 3 N -0.122 5.122 4 C -0.152 4.152 5 C -0.214 4.214 6 N -0.223 5.223 7 C -0.087 4.087 8 C 0.048 3.952 9 H 0.219 0.781 10 C -0.077 4.077 11 N -0.110 5.110 12 C 0.252 3.748 13 O -0.292 6.292 14 C -0.305 4.305 15 S 0.061 5.939 16 C -0.688 4.688 17 H 0.106 0.894 18 C -0.191 4.191 19 N -0.549 5.549 20 Si 0.818 3.182 21 H -0.198 1.198 22 H -0.205 1.205 23 H -0.177 1.177 24 H 0.075 0.925 25 H 0.124 0.876 26 H 0.068 0.932 27 H 0.147 0.853 28 H 0.134 0.866 29 H 0.239 0.761 30 H 0.198 0.802 31 H 0.157 0.843 32 H 0.133 0.867 33 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 9.163 -14.016 -15.057 22.520 hybrid contribution -0.948 -1.447 0.601 1.831 sum 8.216 -15.463 -14.456 22.706 Atomic orbital electron populations 1.22238 0.93659 1.04758 1.02589 1.22443 0.95923 0.77564 1.07704 1.45691 1.47270 1.13812 1.05410 1.23369 1.05040 0.92769 0.93976 1.22775 1.08743 0.99523 0.90363 1.70183 1.17518 1.20230 1.14387 1.21597 1.08887 0.88848 0.89387 1.17474 0.86590 1.05928 0.85244 0.78086 1.27889 0.93690 0.93017 0.93145 1.81210 1.11474 1.08695 1.09601 1.23825 0.81553 0.86898 0.82480 1.90521 1.62326 1.21044 1.55273 1.23974 1.01342 1.05138 1.00087 1.85609 1.42460 1.21743 1.44093 1.23176 1.22868 1.03293 1.19438 0.89366 1.26103 0.97167 0.95484 1.00330 1.70183 1.30651 1.12376 1.41696 0.84988 0.76989 0.78984 0.77263 1.19772 1.20523 1.17673 0.92467 0.87633 0.93229 0.85287 0.86594 0.76150 0.80177 0.84288 0.86692 0.92099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.49 10.24 71.98 0.74 -0.75 16 2 C 0.08 0.57 6.41 86.38 0.55 1.12 16 3 N -0.44 -7.42 2.75 -514.30 -1.41 -8.83 16 4 C -0.02 -0.28 11.58 83.09 0.96 0.69 16 5 C -0.07 -1.61 11.87 83.52 0.99 -0.62 16 6 N -0.50 -16.50 10.51 -188.13 -1.98 -18.47 16 7 C 0.18 4.51 6.07 138.12 0.84 5.35 16 8 C 0.07 1.71 2.83 -14.09 -0.04 1.67 16 9 H 0.20 2.24 6.85 -2.39 -0.02 2.23 16 10 C 0.24 6.85 14.61 89.44 1.31 8.15 16 11 N -0.43 -14.26 18.54 20.00 0.37 -13.89 16 12 C 0.38 12.86 6.24 29.11 0.18 13.04 16 13 O -0.42 -18.48 15.22 -1.43 -0.02 -18.50 16 14 C -0.16 -5.53 6.09 71.24 0.43 -5.09 16 15 S -0.17 -8.84 20.58 -56.49 -1.16 -10.00 16 16 C -0.54 -29.54 9.50 67.96 0.65 -28.89 16 17 H 0.09 4.40 7.80 -2.91 -0.02 4.38 16 18 C 0.01 0.77 5.49 84.86 0.47 1.23 16 19 N -0.91 -55.18 13.22 21.65 0.29 -54.89 16 20 Si 1.00 42.44 29.55 68.60 2.03 44.47 16 21 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 22 H -0.28 -11.71 7.11 99.48 0.71 -11.01 16 23 H -0.25 -9.92 7.11 99.48 0.71 -9.22 16 24 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 25 H 0.11 0.39 8.14 -2.38 -0.02 0.37 16 26 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 27 H 0.13 0.15 8.13 -2.39 -0.02 0.13 16 28 H 0.12 0.33 7.29 -2.39 -0.02 0.31 16 29 H 0.22 1.46 8.06 -2.91 -0.02 1.43 16 30 H 0.18 3.68 8.06 -2.91 -0.02 3.65 16 31 H 0.14 3.86 8.14 -2.39 -0.02 3.84 16 32 H 0.12 3.75 8.14 -2.40 -0.02 3.73 16 33 H 0.27 15.23 8.31 -92.70 -0.77 14.46 16 Total: -1.00 -85.65 317.82 6.32 -79.33 By element: Atomic # 1 Polarization: 3.77 SS G_CDS: 1.13 Total: 4.90 kcal Atomic # 6 Polarization: -11.18 SS G_CDS: 7.08 Total: -4.10 kcal Atomic # 7 Polarization: -93.36 SS G_CDS: -2.73 Total: -96.09 kcal Atomic # 8 Polarization: -18.48 SS G_CDS: -0.02 Total: -18.50 kcal Atomic # 14 Polarization: 42.44 SS G_CDS: 2.03 Total: 44.47 kcal Atomic # 16 Polarization: -8.84 SS G_CDS: -1.16 Total: -10.00 kcal Total: -85.65 6.32 -79.33 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001520036875.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.426 kcal (2) G-P(sol) polarization free energy of solvation -85.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.332 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds