Wall clock time and date at job start Wed Apr 15 2020 11:43:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46898 * 111.00161 * 2 1 4 4 C 1.50700 * 109.47068 * 66.05192 * 3 2 1 5 5 H 1.08005 * 120.00161 * 359.97438 * 4 3 2 6 6 C 1.37881 * 120.00285 * 180.02562 * 4 3 2 7 7 N 1.31508 * 119.99945 * 180.02562 * 6 4 3 8 8 Si 1.86800 * 119.99781 * 359.97438 * 6 4 3 9 9 H 1.48497 * 109.46721 * 90.00453 * 8 6 4 10 10 H 1.48497 * 109.47272 * 209.99999 * 8 6 4 11 11 H 1.48494 * 109.47205 * 330.00691 * 8 6 4 12 12 C 1.46906 * 110.99771 * 236.04801 * 2 1 3 13 13 C 1.50699 * 109.47140 * 293.95489 * 12 2 1 14 14 C 1.37877 * 120.25820 * 115.00141 * 13 12 2 15 15 C 1.39659 * 118.80688 * 180.02562 * 14 13 12 16 16 O 1.22104 * 120.19318 * 179.97438 * 15 14 13 17 17 N 1.36344 * 119.60700 * 359.97438 * 15 14 13 18 18 C 1.37151 * 127.31123 * 180.02562 * 17 15 14 19 19 C 1.30899 * 116.61478 * 180.02562 * 18 17 15 20 20 S 1.75725 * 109.69568 * 359.97438 * 19 18 17 21 21 C 1.35367 * 118.85785 * 0.02562 * 17 15 14 22 22 N 1.32417 * 120.26101 * 294.72306 * 13 12 2 23 23 H 1.08997 * 109.47293 * 183.95420 * 1 2 3 24 24 H 1.09000 * 109.46769 * 303.95193 * 1 2 3 25 25 H 1.08999 * 109.47106 * 63.94333 * 1 2 3 26 26 H 1.09004 * 109.47244 * 186.04995 * 3 2 1 27 27 H 1.08994 * 109.47665 * 306.05094 * 3 2 1 28 28 H 0.97008 * 119.99915 * 180.02562 * 7 6 4 29 29 H 1.09004 * 109.47040 * 53.95427 * 12 2 1 30 30 H 1.09000 * 109.47033 * 173.95379 * 12 2 1 31 31 H 1.07994 * 120.59799 * 359.97370 * 14 13 12 32 32 H 1.08000 * 121.69701 * 0.02562 * 18 17 15 33 33 H 1.07997 * 125.15243 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6371 2.0470 1.2985 5 1 1.0741 1.5114 2.0486 6 6 2.0269 3.3494 1.5286 7 7 1.7146 3.9388 2.6620 8 14 3.0000 4.2761 0.2310 9 1 2.0633 4.9798 -0.6813 10 1 3.8864 5.2678 0.8914 11 1 3.8238 3.3175 -0.5484 12 6 1.9954 -0.7660 -1.1377 13 6 1.6368 -2.2204 -0.9730 14 6 0.7843 -2.8314 -1.8679 15 6 0.4721 -4.1805 -1.6862 16 8 -0.2806 -4.7467 -2.4633 17 7 1.0127 -4.8615 -0.6360 18 6 0.8164 -6.1792 -0.3101 19 6 1.4432 -6.6205 0.7510 20 16 2.3890 -5.3218 1.4630 21 6 1.8433 -4.2069 0.2091 22 7 2.1424 -2.9230 0.0291 23 1 -0.3634 -1.0252 0.0709 24 1 -0.3633 0.5740 0.8525 25 1 -0.3633 0.4514 -0.9232 26 1 3.0798 1.3444 -0.1083 27 1 1.5611 1.9274 -0.8308 28 1 1.9886 4.8552 2.8237 29 1 1.5610 -0.3872 -2.0629 30 1 3.0797 -0.6611 -1.1757 31 1 0.3648 -2.2766 -2.6940 32 1 0.1773 -6.8203 -0.8990 33 1 1.3880 -7.6299 1.1308 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078637052.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:16 Heat of formation + Delta-G solvation = 58.555793 kcal Electronic energy + Delta-G solvation = -18916.388380 eV Core-core repulsion = 15877.377163 eV Total energy + Delta-G solvation = -3039.011217 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 279.078 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.44444 -38.11603 -37.88038 -36.10876 -32.61626 -31.69887 -31.08773 -28.34810 -27.36533 -25.87027 -24.50275 -22.67325 -21.79070 -20.29742 -19.11881 -18.37934 -17.33983 -16.87656 -16.74370 -15.60245 -15.09772 -14.84082 -14.46639 -14.33255 -14.11429 -13.76677 -13.61948 -13.35464 -12.67461 -12.31599 -12.21451 -11.87712 -11.75621 -11.31125 -11.06706 -10.74386 -10.50533 -10.43892 -10.30155 -9.98524 -9.81608 -9.49412 -9.30630 -8.58338 -7.84755 -7.48368 -6.05324 -4.02977 -0.00857 0.37335 1.10968 1.15508 1.76344 2.06480 3.28214 3.36088 3.37301 3.41191 3.97071 4.08561 4.41506 4.54857 4.74097 4.78139 5.00373 5.24514 5.27883 5.36885 5.57786 5.71844 5.84260 6.01704 6.08427 6.18208 6.25241 6.63643 6.79205 6.92821 7.50002 7.54199 7.59930 7.79941 7.95180 8.62940 9.03416 9.55561 11.07749 Molecular weight = 279.08amu Principal moments of inertia in cm(-1) A = 0.028056 B = 0.004174 C = 0.003855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 997.774938 B = 6707.341456 C = 7261.671199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 N -0.517 5.517 3 C 0.163 3.837 4 C -0.509 4.509 5 H 0.081 0.919 6 C 0.069 3.931 7 N -0.900 5.900 8 Si 0.875 3.125 9 H -0.278 1.278 10 H -0.285 1.285 11 H -0.266 1.266 12 C 0.095 3.905 13 C 0.240 3.760 14 C -0.314 4.314 15 C 0.529 3.471 16 O -0.537 6.537 17 N -0.462 5.462 18 C 0.062 3.938 19 C -0.239 4.239 20 S 0.214 5.786 21 C 0.295 3.705 22 N -0.478 5.478 23 H 0.042 0.958 24 H 0.084 0.916 25 H 0.016 0.984 26 H 0.032 0.968 27 H -0.013 1.013 28 H 0.264 0.736 29 H 0.053 0.947 30 H 0.097 0.903 31 H 0.161 0.839 32 H 0.190 0.810 33 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.149 -21.198 -5.323 21.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 N -0.241 5.241 3 C 0.037 3.963 4 C -0.547 4.547 5 H 0.099 0.901 6 C -0.133 4.133 7 N -0.538 5.538 8 Si 0.702 3.298 9 H -0.204 1.204 10 H -0.211 1.211 11 H -0.191 1.191 12 C -0.034 4.034 13 C 0.110 3.890 14 C -0.344 4.344 15 C 0.333 3.667 16 O -0.416 6.416 17 N -0.173 5.173 18 C -0.065 4.065 19 C -0.375 4.375 20 S 0.464 5.536 21 C -0.072 4.072 22 N -0.204 5.204 23 H 0.061 0.939 24 H 0.103 0.897 25 H 0.035 0.965 26 H 0.050 0.950 27 H 0.005 0.995 28 H 0.074 0.926 29 H 0.071 0.929 30 H 0.115 0.885 31 H 0.179 0.821 32 H 0.207 0.793 33 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges 2.182 -21.013 -3.732 21.453 hybrid contribution -1.222 0.482 -2.985 3.261 sum 0.960 -20.531 -6.717 21.623 Atomic orbital electron populations 1.22304 0.87972 0.99809 1.01307 1.61952 1.07494 1.16591 1.38032 1.20241 0.95423 0.83276 0.97371 1.20994 1.35697 0.97173 1.00847 0.90052 1.24882 0.95728 0.97309 0.95332 1.69889 1.46843 1.13235 1.23880 0.86867 0.80643 0.80103 0.82151 1.20357 1.21131 1.19111 1.21118 1.01962 0.86084 0.94275 1.21569 0.86129 0.96019 0.85310 1.22604 1.10234 0.93492 1.08040 1.17287 0.81826 0.88073 0.79501 1.90960 1.37172 1.70019 1.43438 1.45349 1.37071 1.10218 1.24664 1.20812 1.02102 0.84851 0.98769 1.25184 1.05666 1.05791 1.00906 1.85468 1.48770 0.95471 1.23866 1.26337 0.91416 0.94804 0.94595 1.68110 1.28471 1.00092 1.23759 0.93941 0.89701 0.96513 0.94996 0.99536 0.92634 0.92873 0.88453 0.82099 0.79334 0.78269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.67 9.18 60.06 0.55 1.22 16 2 N -0.52 -10.75 4.74 -245.83 -1.17 -11.92 16 3 C 0.16 3.86 3.79 -4.98 -0.02 3.84 16 4 C -0.51 -14.30 9.01 -34.44 -0.31 -14.61 16 5 H 0.08 2.50 7.37 -52.48 -0.39 2.12 16 6 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 7 N -0.90 -27.36 13.96 55.43 0.77 -26.58 16 8 Si 0.88 21.16 27.47 -169.99 -4.67 16.49 16 9 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 10 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 11 H -0.27 -6.14 6.54 56.52 0.37 -5.77 16 12 C 0.09 1.59 5.37 -4.97 -0.03 1.56 16 13 C 0.24 3.83 5.17 -82.47 -0.43 3.41 16 14 C -0.31 -4.75 9.67 -39.18 -0.38 -5.13 16 15 C 0.53 8.22 7.51 -15.02 -0.11 8.10 16 16 O -0.54 -9.46 17.46 4.82 0.08 -9.38 16 17 N -0.46 -5.99 2.82 -66.36 -0.19 -6.18 16 18 C 0.06 0.55 10.46 -16.86 -0.18 0.38 16 19 C -0.24 -1.48 11.12 29.04 0.32 -1.16 16 20 S 0.21 1.90 23.37 -107.50 -2.51 -0.61 16 21 C 0.30 3.95 8.32 -87.91 -0.73 3.22 16 22 N -0.48 -7.75 10.36 -9.02 -0.09 -7.84 16 23 H 0.04 0.76 7.28 -51.93 -0.38 0.38 16 24 H 0.08 1.83 6.76 -51.93 -0.35 1.48 16 25 H 0.02 0.30 8.14 -51.93 -0.42 -0.12 16 26 H 0.03 0.76 6.99 -51.93 -0.36 0.40 16 27 H -0.01 -0.30 7.55 -51.93 -0.39 -0.70 16 28 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 29 H 0.05 0.80 7.89 -51.93 -0.41 0.39 16 30 H 0.10 1.57 7.93 -51.93 -0.41 1.16 16 31 H 0.16 2.21 7.98 -52.49 -0.42 1.79 16 32 H 0.19 1.35 8.00 -52.49 -0.42 0.93 16 33 H 0.20 0.44 8.06 -52.49 -0.42 0.01 16 LS Contribution 298.28 15.07 4.50 4.50 Total: -1.00 -34.03 298.28 -8.22 -42.26 By element: Atomic # 1 Polarization: 0.11 SS G_CDS: -3.54 Total: -3.44 kcal Atomic # 6 Polarization: 4.11 SS G_CDS: -1.41 Total: 2.71 kcal Atomic # 7 Polarization: -51.85 SS G_CDS: -0.67 Total: -52.52 kcal Atomic # 8 Polarization: -9.46 SS G_CDS: 0.08 Total: -9.38 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -4.67 Total: 16.49 kcal Atomic # 16 Polarization: 1.90 SS G_CDS: -2.51 Total: -0.61 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -34.03 -8.22 -42.26 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078637052.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.813 kcal (2) G-P(sol) polarization free energy of solvation -34.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.257 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds