Wall clock time and date at job start Wed Apr 15 2020 11:43:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46898 * 111.00161 * 2 1 4 4 C 1.50700 * 109.47068 * 66.05192 * 3 2 1 5 5 H 1.08005 * 120.00161 * 359.97438 * 4 3 2 6 6 C 1.37881 * 120.00285 * 180.02562 * 4 3 2 7 7 N 1.31508 * 119.99945 * 180.02562 * 6 4 3 8 8 Si 1.86800 * 119.99781 * 359.97438 * 6 4 3 9 9 H 1.48497 * 109.46721 * 90.00453 * 8 6 4 10 10 H 1.48497 * 109.47272 * 209.99999 * 8 6 4 11 11 H 1.48494 * 109.47205 * 330.00691 * 8 6 4 12 12 C 1.46906 * 110.99771 * 236.04801 * 2 1 3 13 13 C 1.50699 * 109.47140 * 293.95489 * 12 2 1 14 14 C 1.37877 * 120.25820 * 115.00141 * 13 12 2 15 15 C 1.39659 * 118.80688 * 180.02562 * 14 13 12 16 16 O 1.22104 * 120.19318 * 179.97438 * 15 14 13 17 17 N 1.36344 * 119.60700 * 359.97438 * 15 14 13 18 18 C 1.37151 * 127.31123 * 180.02562 * 17 15 14 19 19 C 1.30899 * 116.61478 * 180.02562 * 18 17 15 20 20 S 1.75725 * 109.69568 * 359.97438 * 19 18 17 21 21 C 1.35367 * 118.85785 * 0.02562 * 17 15 14 22 22 N 1.32417 * 120.26101 * 294.72306 * 13 12 2 23 23 H 1.08997 * 109.47293 * 183.95420 * 1 2 3 24 24 H 1.09000 * 109.46769 * 303.95193 * 1 2 3 25 25 H 1.08999 * 109.47106 * 63.94333 * 1 2 3 26 26 H 1.09004 * 109.47244 * 186.04995 * 3 2 1 27 27 H 1.08994 * 109.47665 * 306.05094 * 3 2 1 28 28 H 0.97008 * 119.99915 * 180.02562 * 7 6 4 29 29 H 1.09004 * 109.47040 * 53.95427 * 12 2 1 30 30 H 1.09000 * 109.47033 * 173.95379 * 12 2 1 31 31 H 1.07994 * 120.59799 * 359.97370 * 14 13 12 32 32 H 1.08000 * 121.69701 * 0.02562 * 18 17 15 33 33 H 1.07997 * 125.15243 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6371 2.0470 1.2985 5 1 1.0741 1.5114 2.0486 6 6 2.0269 3.3494 1.5286 7 7 1.7146 3.9388 2.6620 8 14 3.0000 4.2761 0.2310 9 1 2.0633 4.9798 -0.6813 10 1 3.8864 5.2678 0.8914 11 1 3.8238 3.3175 -0.5484 12 6 1.9954 -0.7660 -1.1377 13 6 1.6368 -2.2204 -0.9730 14 6 0.7843 -2.8314 -1.8679 15 6 0.4721 -4.1805 -1.6862 16 8 -0.2806 -4.7467 -2.4633 17 7 1.0127 -4.8615 -0.6360 18 6 0.8164 -6.1792 -0.3101 19 6 1.4432 -6.6205 0.7510 20 16 2.3890 -5.3218 1.4630 21 6 1.8433 -4.2069 0.2091 22 7 2.1424 -2.9230 0.0291 23 1 -0.3634 -1.0252 0.0709 24 1 -0.3633 0.5740 0.8525 25 1 -0.3633 0.4514 -0.9232 26 1 3.0798 1.3444 -0.1083 27 1 1.5611 1.9274 -0.8308 28 1 1.9886 4.8552 2.8237 29 1 1.5610 -0.3872 -2.0629 30 1 3.0797 -0.6611 -1.1757 31 1 0.3648 -2.2766 -2.6940 32 1 0.1773 -6.8203 -0.8990 33 1 1.3880 -7.6299 1.1308 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000078637052.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:15 Heat of formation + Delta-G solvation = 33.994058 kcal Electronic energy + Delta-G solvation = -18917.453457 eV Core-core repulsion = 15877.377163 eV Total energy + Delta-G solvation = -3040.076294 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 279.078 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -43.44669 -39.35711 -38.98037 -37.50265 -34.64418 -32.71780 -32.23999 -30.07103 -28.83313 -26.94056 -26.04518 -23.86138 -22.89286 -21.96257 -20.05191 -19.45870 -18.95929 -18.22459 -17.83714 -16.84102 -16.54522 -16.10699 -15.96699 -15.67930 -15.33964 -14.83238 -14.73511 -14.57195 -14.44573 -13.72704 -13.61133 -13.47897 -12.93583 -12.66241 -12.56637 -12.50728 -12.19146 -11.76933 -11.53034 -11.44979 -11.27755 -11.06243 -10.75636 -10.49157 -9.09125 -8.78631 -8.24529 -6.28228 -1.01684 -0.50157 0.23957 0.45130 0.78220 1.15860 1.39158 1.41213 1.51882 2.28977 2.38437 2.90329 3.07500 3.11131 3.26941 3.71971 4.10321 4.19524 4.27113 4.34937 4.42295 4.44479 4.56708 4.62273 4.79601 4.90198 5.00017 5.07434 5.15557 5.22299 5.54685 5.94242 6.24164 6.43925 6.50922 6.62365 6.77690 7.34896 8.92222 Molecular weight = 279.08amu Principal moments of inertia in cm(-1) A = 0.028056 B = 0.004174 C = 0.003855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 997.774938 B = 6707.341456 C = 7261.671199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.044 3.956 2 N -0.536 5.536 3 C 0.172 3.828 4 C -0.516 4.516 5 H 0.035 0.965 6 C 0.008 3.992 7 N -0.950 5.950 8 Si 0.948 3.052 9 H -0.268 1.268 10 H -0.284 1.284 11 H -0.244 1.244 12 C 0.097 3.903 13 C 0.239 3.761 14 C -0.326 4.326 15 C 0.521 3.479 16 O -0.570 6.570 17 N -0.460 5.460 18 C 0.024 3.976 19 C -0.191 4.191 20 S 0.258 5.742 21 C 0.274 3.726 22 N -0.518 5.518 23 H 0.054 0.946 24 H 0.052 0.948 25 H 0.031 0.969 26 H 0.038 0.962 27 H -0.004 1.004 28 H 0.266 0.734 29 H 0.075 0.925 30 H 0.103 0.897 31 H 0.168 0.832 32 H 0.206 0.794 33 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.295 -23.286 -6.188 24.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 N -0.260 5.260 3 C 0.046 3.954 4 C -0.555 4.555 5 H 0.054 0.946 6 C -0.189 4.189 7 N -0.591 5.591 8 Si 0.771 3.229 9 H -0.193 1.193 10 H -0.209 1.209 11 H -0.167 1.167 12 C -0.032 4.032 13 C 0.107 3.893 14 C -0.355 4.355 15 C 0.327 3.673 16 O -0.452 6.452 17 N -0.170 5.170 18 C -0.101 4.101 19 C -0.328 4.328 20 S 0.509 5.491 21 C -0.091 4.091 22 N -0.245 5.245 23 H 0.072 0.928 24 H 0.071 0.929 25 H 0.050 0.950 26 H 0.056 0.944 27 H 0.014 0.986 28 H 0.075 0.925 29 H 0.093 0.907 30 H 0.121 0.879 31 H 0.186 0.814 32 H 0.223 0.777 33 H 0.268 0.732 Dipole moment (debyes) X Y Z Total from point charges 3.335 -23.182 -4.571 23.862 hybrid contribution -1.564 0.875 -2.484 3.063 sum 1.771 -22.307 -7.055 23.463 Atomic orbital electron populations 1.22150 0.87591 1.00079 1.00567 1.61753 1.08022 1.15277 1.40976 1.19997 0.95708 0.84731 0.94975 1.21233 1.34898 0.97471 1.01848 0.94644 1.25845 0.96948 0.98364 0.97756 1.70055 1.48681 1.13851 1.26471 0.85702 0.79233 0.78770 0.79159 1.19295 1.20946 1.16688 1.21144 1.02276 0.86224 0.93517 1.21370 0.86551 0.95582 0.85821 1.22611 1.10661 0.93802 1.08472 1.17310 0.81767 0.88345 0.79893 1.90928 1.38794 1.70705 1.44799 1.45320 1.36206 1.11634 1.23796 1.21248 1.04561 0.83539 1.00796 1.25851 1.01828 1.06742 0.98338 1.85488 1.47479 0.94667 1.21439 1.27032 0.91531 0.94782 0.95748 1.68046 1.30112 1.01736 1.24630 0.92752 0.92889 0.95007 0.94445 0.98588 0.92471 0.90714 0.87934 0.81418 0.77746 0.73228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.76 9.18 127.69 1.17 2.93 16 2 N -0.54 -22.31 4.74 -931.65 -4.42 -26.73 16 3 C 0.17 8.10 3.79 85.56 0.32 8.42 16 4 C -0.52 -29.80 9.01 25.60 0.23 -29.57 16 5 H 0.04 2.31 7.37 -2.91 -0.02 2.29 16 6 C 0.01 0.46 5.47 84.66 0.46 0.92 16 7 N -0.95 -59.46 13.96 21.45 0.30 -59.16 16 8 Si 0.95 43.31 27.47 68.60 1.88 45.20 16 9 H -0.27 -11.76 7.11 99.48 0.71 -11.06 16 10 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 11 H -0.24 -10.15 6.54 99.48 0.65 -9.50 16 12 C 0.10 3.16 5.37 85.56 0.46 3.62 16 13 C 0.24 7.57 5.17 42.38 0.22 7.79 16 14 C -0.33 -9.83 9.67 22.53 0.22 -9.61 16 15 C 0.52 16.16 7.51 84.34 0.63 16.79 16 16 O -0.57 -20.20 17.46 -5.66 -0.10 -20.30 16 17 N -0.46 -11.41 2.82 -481.02 -1.36 -12.77 16 18 C 0.02 0.36 10.46 83.92 0.88 1.24 16 19 C -0.19 -1.53 11.12 67.88 0.75 -0.77 16 20 S 0.26 3.80 23.37 -56.49 -1.32 2.48 16 21 C 0.27 7.00 8.32 179.40 1.49 8.50 16 22 N -0.52 -16.62 10.36 -182.43 -1.89 -18.51 16 23 H 0.05 1.98 7.28 -2.39 -0.02 1.96 16 24 H 0.05 2.39 6.76 -2.39 -0.02 2.38 16 25 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 26 H 0.04 1.72 6.99 -2.38 -0.02 1.70 16 27 H 0.00 -0.16 7.55 -2.39 -0.02 -0.18 16 28 H 0.27 15.53 8.31 -92.70 -0.77 14.76 16 29 H 0.07 2.11 7.89 -2.38 -0.02 2.09 16 30 H 0.10 3.20 7.93 -2.39 -0.02 3.18 16 31 H 0.17 4.59 7.98 -2.91 -0.02 4.57 16 32 H 0.21 2.43 8.00 -2.91 -0.02 2.40 16 33 H 0.25 -0.59 8.06 -2.91 -0.02 -0.61 16 Total: -1.00 -77.54 298.28 1.02 -76.52 By element: Atomic # 1 Polarization: 1.94 SS G_CDS: 1.08 Total: 3.01 kcal Atomic # 6 Polarization: 3.41 SS G_CDS: 6.85 Total: 10.26 kcal Atomic # 7 Polarization: -109.80 SS G_CDS: -7.37 Total: -117.17 kcal Atomic # 8 Polarization: -20.20 SS G_CDS: -0.10 Total: -20.30 kcal Atomic # 14 Polarization: 43.31 SS G_CDS: 1.88 Total: 45.20 kcal Atomic # 16 Polarization: 3.80 SS G_CDS: -1.32 Total: 2.48 kcal Total: -77.54 1.02 -76.52 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078637052.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.514 kcal (2) G-P(sol) polarization free energy of solvation -77.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.520 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds