Wall clock time and date at job start Wed Apr 15 2020 11:43:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46903 * 110.99668 * 2 1 4 4 C 1.50704 * 109.47143 * 66.04886 * 3 2 1 5 5 H 1.07998 * 119.99510 * 359.97438 * 4 3 2 6 6 C 1.37876 * 119.99994 * 179.97438 * 4 3 2 7 7 N 1.31519 * 120.00031 * 0.02562 * 6 4 3 8 8 Si 1.86800 * 119.99914 * 179.97438 * 6 4 3 9 9 H 1.48500 * 109.47048 * 0.02562 * 8 6 4 10 10 H 1.48501 * 109.46600 * 120.00290 * 8 6 4 11 11 H 1.48497 * 109.47126 * 240.00088 * 8 6 4 12 12 C 1.46901 * 110.99842 * 236.04866 * 2 1 3 13 13 C 1.50697 * 109.47395 * 293.95141 * 12 2 1 14 14 N 1.29595 * 118.87772 * 0.04097 * 13 12 2 15 15 C 1.37007 * 121.68162 * 179.97438 * 14 13 12 16 16 C 1.39915 * 129.15586 * 179.97438 * 15 14 13 17 17 C 1.32758 * 115.82249 * 179.97438 * 16 15 14 18 18 S 1.75587 * 110.53825 * 0.02562 * 17 16 15 19 19 C 1.39101 * 118.19079 * 359.96321 * 15 14 13 20 20 C 1.41545 * 119.09580 * 0.02562 * 19 15 14 21 21 O 1.21962 * 120.64058 * 180.02562 * 20 19 15 22 22 N 1.34887 * 118.72223 * 0.02562 * 20 19 15 23 23 H 0.97000 * 119.95979 * 179.97438 * 22 20 19 24 24 H 1.08999 * 109.47240 * 183.95111 * 1 2 3 25 25 H 1.09000 * 109.47365 * 303.95101 * 1 2 3 26 26 H 1.09003 * 109.47450 * 63.95228 * 1 2 3 27 27 H 1.09008 * 109.47031 * 186.04472 * 3 2 1 28 28 H 1.08996 * 109.47364 * 306.04240 * 3 2 1 29 29 H 0.96993 * 120.00254 * 180.02562 * 7 6 4 30 30 H 1.09001 * 109.46973 * 173.95387 * 12 2 1 31 31 H 1.08998 * 109.47309 * 53.95904 * 12 2 1 32 32 H 1.07999 * 122.08786 * 359.70775 * 16 15 14 33 33 H 1.07996 * 124.72983 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3715 0.0000 4 6 1.6368 2.0472 1.2985 5 1 1.0739 1.5114 2.0485 6 6 2.0275 3.3492 1.5290 7 7 2.7126 4.0017 0.6154 8 14 1.5825 4.1869 3.1382 9 1 0.8145 3.2445 3.9910 10 1 2.8240 4.5935 3.8443 11 1 0.7559 5.3884 2.8587 12 6 1.9954 -0.7659 -1.1376 13 6 1.6369 -2.2204 -0.9730 14 7 0.9606 -2.5840 0.0710 15 6 0.6035 -3.8904 0.2778 16 6 -0.1172 -4.4522 1.3374 17 6 -0.3159 -5.7631 1.2708 18 16 0.4143 -6.4238 -0.1829 19 6 0.9862 -4.8342 -0.6697 20 6 1.7242 -4.4129 -1.8017 21 8 2.0739 -5.2164 -2.6500 22 7 2.0334 -3.1057 -1.9242 23 1 2.5388 -2.7974 -2.6925 24 1 -0.3634 -1.0252 0.0708 25 1 -0.3634 0.5739 0.8525 26 1 -0.3634 0.4513 -0.9233 27 1 3.0797 1.3445 -0.1082 28 1 1.5611 1.9274 -0.8309 29 1 2.9878 4.9175 0.7776 30 1 3.0797 -0.6611 -1.1757 31 1 1.5611 -0.3871 -2.0628 32 1 -0.4849 -3.8572 2.1603 33 1 -0.8513 -6.3425 2.0084 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000078637211.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:17 Heat of formation + Delta-G solvation = 18.972079 kcal Electronic energy + Delta-G solvation = -18921.159142 eV Core-core repulsion = 15880.431446 eV Total energy + Delta-G solvation = -3040.727696 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 279.078 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.70084 -39.37525 -38.51964 -37.15714 -34.65631 -33.91563 -31.57283 -29.50736 -28.64287 -26.47399 -25.73561 -24.01112 -22.36158 -21.75112 -20.26831 -19.53015 -18.49933 -17.74652 -17.32715 -17.26957 -16.69102 -16.03808 -15.80098 -15.60125 -15.13017 -14.86339 -14.58384 -14.09669 -13.99488 -13.80129 -13.51165 -13.14263 -12.73325 -12.56043 -12.51361 -12.33930 -12.07527 -11.88285 -11.65250 -11.28399 -11.18380 -10.72064 -10.55724 -10.09960 -8.97553 -8.92773 -8.15435 -6.22829 -0.87520 0.31204 0.34802 0.87299 1.23187 1.44736 1.46509 1.57445 1.60815 2.44095 2.45648 2.70936 3.17544 3.19945 3.49972 3.64706 3.91973 4.26181 4.30906 4.46952 4.70409 4.80054 4.84243 4.86807 5.02459 5.18871 5.26051 5.26925 5.38162 5.50171 5.72035 6.09132 6.36431 6.54498 6.60135 6.82543 6.93323 7.46307 8.95530 Molecular weight = 279.08amu Principal moments of inertia in cm(-1) A = 0.029703 B = 0.004024 C = 0.003624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 942.432336 B = 6957.202168 C = 7724.235582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 N -0.527 5.527 3 C 0.205 3.795 4 C -0.517 4.517 5 H 0.061 0.939 6 C 0.005 3.995 7 N -0.933 5.933 8 Si 0.962 3.038 9 H -0.265 1.265 10 H -0.281 1.281 11 H -0.280 1.280 12 C 0.097 3.903 13 C 0.408 3.592 14 N -0.493 5.493 15 C 0.166 3.834 16 C -0.147 4.147 17 C -0.139 4.139 18 S 0.211 5.789 19 C -0.379 4.379 20 C 0.570 3.430 21 O -0.570 6.570 22 N -0.624 5.624 23 H 0.434 0.566 24 H 0.085 0.915 25 H 0.054 0.946 26 H 0.007 0.993 27 H 0.015 0.985 28 H -0.027 1.027 29 H 0.263 0.737 30 H 0.119 0.881 31 H 0.084 0.916 32 H 0.169 0.831 33 H 0.224 0.776 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.905 -18.045 -1.133 19.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 N -0.251 5.251 3 C 0.080 3.920 4 C -0.556 4.556 5 H 0.079 0.921 6 C -0.193 4.193 7 N -0.574 5.574 8 Si 0.788 3.212 9 H -0.189 1.189 10 H -0.207 1.207 11 H -0.206 1.206 12 C -0.034 4.034 13 C 0.137 3.863 14 N -0.215 5.215 15 C 0.040 3.960 16 C -0.176 4.176 17 C -0.277 4.277 18 S 0.476 5.524 19 C -0.500 4.500 20 C 0.366 3.634 21 O -0.451 6.451 22 N -0.268 5.268 23 H 0.276 0.724 24 H 0.104 0.896 25 H 0.072 0.928 26 H 0.026 0.974 27 H 0.033 0.967 28 H -0.009 1.009 29 H 0.072 0.928 30 H 0.137 0.863 31 H 0.101 0.899 32 H 0.186 0.814 33 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges -5.787 -19.769 -1.046 20.625 hybrid contribution 0.223 2.299 -0.493 2.362 sum -5.564 -17.470 -1.540 18.399 Atomic orbital electron populations 1.22331 0.87102 1.02007 0.99203 1.61738 1.08727 1.14997 1.39620 1.19475 0.94301 0.82949 0.95304 1.21484 1.34367 0.97258 1.02472 0.92053 1.25783 0.95209 0.98070 1.00258 1.70060 1.39589 1.11873 1.35906 0.85430 0.77953 0.78239 0.79581 1.18912 1.20690 1.20637 1.21184 1.02798 0.84271 0.95099 1.23091 0.87238 0.93110 0.82834 1.68708 1.17919 1.15431 1.19449 1.19718 0.94412 0.88371 0.93548 1.19766 1.02620 0.95512 0.99723 1.26290 1.02375 0.97571 1.01431 1.83950 1.49763 1.02604 1.16106 1.24741 1.18132 1.02803 1.04353 1.15980 0.79926 0.81710 0.85833 1.90940 1.57305 1.52221 1.44672 1.44187 1.49889 1.07839 1.24887 0.72401 0.89637 0.92755 0.97404 0.96656 1.00919 0.92807 0.86283 0.89858 0.81403 0.75987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.55 8.98 127.69 1.15 2.70 16 2 N -0.53 -20.84 4.43 -931.64 -4.13 -24.97 16 3 C 0.21 10.06 4.72 85.56 0.40 10.47 16 4 C -0.52 -28.07 8.46 25.60 0.22 -27.86 16 5 H 0.06 3.33 7.12 -2.91 -0.02 3.31 16 6 C 0.00 0.26 5.46 84.65 0.46 0.72 16 7 N -0.93 -53.98 13.29 21.45 0.28 -53.69 16 8 Si 0.96 43.22 29.54 68.60 2.03 45.25 16 9 H -0.27 -11.51 7.11 99.48 0.71 -10.81 16 10 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 11 H -0.28 -12.30 7.11 99.48 0.71 -11.60 16 12 C 0.10 2.86 5.41 85.56 0.46 3.32 16 13 C 0.41 11.56 7.37 138.13 1.02 12.58 16 14 N -0.49 -15.45 7.24 -180.49 -1.31 -16.76 16 15 C 0.17 4.65 7.01 38.95 0.27 4.92 16 16 C -0.15 -3.08 10.15 21.50 0.22 -2.87 16 17 C -0.14 -2.08 11.13 66.64 0.74 -1.34 16 18 S 0.21 4.29 23.30 -56.49 -1.32 2.97 16 19 C -0.38 -10.66 6.48 23.29 0.15 -10.51 16 20 C 0.57 17.25 7.76 85.04 0.66 17.91 16 21 O -0.57 -19.93 17.97 -5.19 -0.09 -20.02 16 22 N -0.62 -15.72 5.28 -310.35 -1.64 -17.36 16 23 H 0.43 8.26 8.78 -92.71 -0.81 7.44 16 24 H 0.09 2.90 5.66 -2.39 -0.01 2.89 16 25 H 0.05 2.22 6.76 -2.39 -0.02 2.21 16 26 H 0.01 0.27 8.14 -2.39 -0.02 0.25 16 27 H 0.02 0.79 7.93 -2.38 -0.02 0.77 16 28 H -0.03 -1.41 8.12 -2.39 -0.02 -1.43 16 29 H 0.26 14.37 8.31 -92.71 -0.77 13.60 16 30 H 0.12 3.19 7.93 -2.39 -0.02 3.17 16 31 H 0.08 2.13 8.12 -2.39 -0.02 2.11 16 32 H 0.17 3.12 8.06 -2.91 -0.02 3.09 16 33 H 0.22 1.27 8.06 -2.91 -0.02 1.24 16 Total: -1.00 -69.91 298.29 -0.07 -69.98 By element: Atomic # 1 Polarization: 4.22 SS G_CDS: 0.34 Total: 4.56 kcal Atomic # 6 Polarization: 4.28 SS G_CDS: 5.76 Total: 10.04 kcal Atomic # 7 Polarization: -105.99 SS G_CDS: -6.79 Total: -112.78 kcal Atomic # 8 Polarization: -19.93 SS G_CDS: -0.09 Total: -20.02 kcal Atomic # 14 Polarization: 43.22 SS G_CDS: 2.03 Total: 45.25 kcal Atomic # 16 Polarization: 4.29 SS G_CDS: -1.32 Total: 2.97 kcal Total: -69.91 -0.07 -69.98 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078637211.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.953 kcal (2) G-P(sol) polarization free energy of solvation -69.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.981 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds