Wall clock time and date at job start Wed Apr 15 2020 11:43:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46898 * 111.00283 * 2 1 4 4 C 1.50702 * 109.46796 * 66.04964 * 3 2 1 5 5 H 1.08003 * 119.99822 * 359.97438 * 4 3 2 6 6 C 1.37873 * 119.99809 * 180.02562 * 4 3 2 7 7 N 1.31523 * 120.00246 * 179.97438 * 6 4 3 8 8 Si 1.86802 * 120.00116 * 359.97438 * 6 4 3 9 9 H 1.48496 * 109.47222 * 90.00275 * 8 6 4 10 10 H 1.48496 * 109.47118 * 210.00206 * 8 6 4 11 11 H 1.48501 * 109.47094 * 329.99916 * 8 6 4 12 12 C 1.46906 * 110.99573 * 236.04859 * 2 1 3 13 13 C 1.50701 * 109.46965 * 293.95399 * 12 2 1 14 14 N 1.30930 * 126.40483 * 89.71798 * 13 12 2 15 15 C 1.35390 * 105.57881 * 179.85796 * 14 13 12 16 16 C 1.47734 * 126.44853 * 180.14522 * 15 14 13 17 17 C 1.34851 * 125.27015 * 179.97438 * 16 15 14 18 18 C 1.37829 * 114.72109 * 179.79191 * 17 16 15 19 19 C 1.33715 * 115.06934 * 0.50714 * 18 17 16 20 20 S 1.75858 * 109.74829 * 359.72181 * 19 18 17 21 21 N 1.31034 * 107.10032 * 0.40536 * 15 14 13 22 22 O 1.21290 * 110.04383 * 359.73979 * 21 15 14 23 23 H 1.09004 * 109.47457 * 183.95363 * 1 2 3 24 24 H 1.09001 * 109.46615 * 303.95014 * 1 2 3 25 25 H 1.08990 * 109.47358 * 63.94680 * 1 2 3 26 26 H 1.08999 * 109.46988 * 186.04548 * 3 2 1 27 27 H 1.08996 * 109.46945 * 306.05035 * 3 2 1 28 28 H 0.96996 * 119.99953 * 179.97438 * 7 6 4 29 29 H 1.08993 * 109.47164 * 53.95342 * 12 2 1 30 30 H 1.08996 * 109.46920 * 173.95376 * 12 2 1 31 31 H 1.08003 * 122.63972 * 359.97438 * 17 16 15 32 32 H 1.08000 * 122.46460 * 180.23083 * 18 17 16 33 33 H 1.08004 * 125.12602 * 179.73027 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6371 2.0470 1.2985 5 1 1.0741 1.5113 2.0485 6 6 2.0270 3.3493 1.5286 7 7 1.7137 3.9392 2.6616 8 14 3.0001 4.2760 0.2310 9 1 2.0635 4.9797 -0.6815 10 1 3.8865 5.2676 0.8914 11 1 3.8241 3.3174 -0.5483 12 6 1.9954 -0.7660 -1.1377 13 6 1.6368 -2.2204 -0.9730 14 7 0.5504 -2.8071 -1.4087 15 6 0.6626 -4.1036 -1.0353 16 6 -0.3144 -5.1802 -1.2979 17 6 -0.1780 -6.4659 -0.9147 18 6 -1.2255 -7.2878 -1.2711 19 6 -2.2098 -6.6892 -1.9499 20 16 -1.8321 -4.9852 -2.1652 21 7 1.7981 -4.2226 -0.3924 22 8 2.3658 -3.1516 -0.3497 23 1 -0.3634 -1.0252 0.0709 24 1 -0.3632 0.5739 0.8525 25 1 -0.3633 0.4513 -0.9231 26 1 3.0798 1.3443 -0.1082 27 1 1.5611 1.9273 -0.8308 28 1 1.9884 4.8552 2.8236 29 1 1.5610 -0.3872 -2.0628 30 1 3.0796 -0.6611 -1.1758 31 1 0.6828 -6.8229 -0.3688 32 1 -1.2474 -8.3390 -1.0243 33 1 -3.1022 -7.1784 -2.3113 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078645557.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:20 Heat of formation + Delta-G solvation = 118.212811 kcal Electronic energy + Delta-G solvation = -18478.919981 eV Core-core repulsion = 15442.495687 eV Total energy + Delta-G solvation = -3036.424295 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 279.078 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -45.43392 -38.14038 -37.22700 -35.62687 -33.11873 -32.23247 -29.77557 -28.47389 -27.38079 -25.31317 -24.37870 -23.41127 -21.94897 -20.50407 -19.13585 -18.42420 -18.01437 -16.98562 -16.59264 -15.86879 -15.13541 -14.75776 -14.60444 -14.09636 -13.85053 -13.60483 -12.99931 -12.92625 -12.59683 -12.48226 -12.22852 -11.89302 -11.82852 -11.42026 -11.20577 -11.09722 -10.92787 -10.82215 -10.46839 -10.27677 -9.91215 -9.40944 -8.80043 -8.76661 -8.64757 -7.71366 -6.11392 -4.10486 0.28009 1.20187 1.30035 1.69352 2.09959 2.75990 2.89570 3.24028 3.31700 3.32520 3.41514 4.10291 4.35505 4.66020 4.73104 4.89236 5.14012 5.20649 5.25815 5.37092 5.45446 5.63976 5.78183 5.87571 5.97462 6.02206 6.09004 6.14188 6.57001 6.69847 6.82244 7.39251 7.63245 7.77600 8.16747 8.53376 8.96532 9.48169 11.01474 Molecular weight = 279.08amu Principal moments of inertia in cm(-1) A = 0.039253 B = 0.003388 C = 0.003301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 713.156942 B = 8261.701287 C = 8479.151215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 N -0.526 5.526 3 C 0.164 3.836 4 C -0.513 4.513 5 H 0.082 0.918 6 C 0.070 3.930 7 N -0.897 5.897 8 Si 0.876 3.124 9 H -0.277 1.277 10 H -0.285 1.285 11 H -0.266 1.266 12 C 0.134 3.866 13 C 0.222 3.778 14 N -0.480 5.480 15 C 0.230 3.770 16 C -0.123 4.123 17 C -0.097 4.097 18 C -0.138 4.138 19 C -0.215 4.215 20 S 0.187 5.813 21 N -0.373 5.373 22 O 0.092 5.908 23 H 0.049 0.951 24 H 0.086 0.914 25 H 0.021 0.979 26 H 0.035 0.965 27 H -0.008 1.008 28 H 0.265 0.735 29 H 0.078 0.922 30 H 0.110 0.890 31 H 0.147 0.853 32 H 0.146 0.854 33 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.759 -19.011 -11.599 22.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 N -0.252 5.252 3 C 0.039 3.961 4 C -0.552 4.552 5 H 0.100 0.900 6 C -0.132 4.132 7 N -0.536 5.536 8 Si 0.703 3.297 9 H -0.203 1.203 10 H -0.211 1.211 11 H -0.190 1.190 12 C 0.004 3.996 13 C 0.001 3.999 14 N -0.214 5.214 15 C -0.040 4.040 16 C -0.242 4.242 17 C -0.132 4.132 18 C -0.169 4.169 19 C -0.352 4.352 20 S 0.451 5.549 21 N -0.080 5.080 22 O 0.031 5.969 23 H 0.068 0.932 24 H 0.104 0.896 25 H 0.040 0.960 26 H 0.053 0.947 27 H 0.010 0.990 28 H 0.075 0.925 29 H 0.096 0.904 30 H 0.129 0.871 31 H 0.165 0.835 32 H 0.164 0.836 33 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -5.424 -18.582 -11.630 22.582 hybrid contribution 0.990 -0.096 -0.542 1.132 sum -4.435 -18.678 -12.172 22.731 Atomic orbital electron populations 1.22356 0.87043 1.00622 1.01585 1.62016 1.08597 1.17225 1.37322 1.20262 0.95540 0.82496 0.97807 1.20953 1.36114 0.97313 1.00786 0.89997 1.24885 0.95667 0.97263 0.95380 1.69887 1.46495 1.13302 1.23871 0.86859 0.80606 0.80173 0.82071 1.20264 1.21069 1.19033 1.20695 1.02675 0.80381 0.95869 1.28831 0.85446 0.96561 0.89064 1.72096 1.21187 1.03385 1.24745 1.22664 0.92764 0.90528 0.98064 1.21302 0.98905 0.93861 1.10156 1.20352 1.00653 0.91094 1.01075 1.20021 0.93738 1.01561 1.01535 1.26045 1.04484 0.98013 1.06693 1.84513 1.12044 1.06118 1.52208 1.74993 1.09244 1.03631 1.20112 1.85299 1.42338 1.12917 1.56360 0.93188 0.89554 0.96005 0.94689 0.99023 0.92506 0.90425 0.87147 0.83542 0.83622 0.81216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.61 9.18 60.07 0.55 1.17 16 2 N -0.53 -10.41 4.74 -245.83 -1.17 -11.58 16 3 C 0.16 3.69 3.79 -4.98 -0.02 3.67 16 4 C -0.51 -14.00 9.01 -34.44 -0.31 -14.31 16 5 H 0.08 2.46 7.37 -52.48 -0.39 2.07 16 6 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 7 N -0.90 -26.81 13.96 55.43 0.77 -26.03 16 8 Si 0.88 20.48 27.47 -169.99 -4.67 15.81 16 9 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 10 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 11 H -0.27 -5.84 6.54 56.52 0.37 -5.47 16 12 C 0.13 2.08 5.59 -4.97 -0.03 2.05 16 13 C 0.22 3.55 7.11 -12.97 -0.09 3.46 16 14 N -0.48 -7.87 10.86 -9.88 -0.11 -7.97 16 15 C 0.23 3.66 8.02 -156.05 -1.25 2.41 16 16 C -0.12 -1.64 6.44 -36.90 -0.24 -1.88 16 17 C -0.10 -1.08 10.05 -40.93 -0.41 -1.49 16 18 C -0.14 -1.20 10.16 -41.32 -0.42 -1.62 16 19 C -0.22 -1.77 11.23 29.15 0.33 -1.44 16 20 S 0.19 2.02 23.32 -107.50 -2.51 -0.48 16 21 N -0.37 -6.13 12.16 30.99 0.38 -5.75 16 22 O 0.09 1.50 11.29 18.01 0.20 1.71 16 23 H 0.05 0.91 6.73 -51.93 -0.35 0.56 16 24 H 0.09 1.82 6.76 -51.93 -0.35 1.47 16 25 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 26 H 0.04 0.77 6.99 -51.93 -0.36 0.41 16 27 H -0.01 -0.17 7.55 -51.93 -0.39 -0.57 16 28 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 29 H 0.08 1.09 8.12 -51.93 -0.42 0.67 16 30 H 0.11 1.48 7.93 -51.93 -0.41 1.06 16 31 H 0.15 1.54 8.06 -52.48 -0.42 1.12 16 32 H 0.15 0.87 8.06 -52.49 -0.42 0.45 16 33 H 0.17 0.89 8.06 -52.48 -0.42 0.47 16 LS Contribution 302.68 15.07 4.56 4.56 Total: -1.00 -30.78 302.68 -8.06 -38.83 By element: Atomic # 1 Polarization: 0.56 SS G_CDS: -3.53 Total: -2.97 kcal Atomic # 6 Polarization: -4.13 SS G_CDS: -1.99 Total: -6.12 kcal Atomic # 7 Polarization: -51.22 SS G_CDS: -0.12 Total: -51.34 kcal Atomic # 8 Polarization: 1.50 SS G_CDS: 0.20 Total: 1.71 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -4.67 Total: 15.81 kcal Atomic # 16 Polarization: 2.02 SS G_CDS: -2.51 Total: -0.48 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -30.78 -8.06 -38.83 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078645557.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.047 kcal (2) G-P(sol) polarization free energy of solvation -30.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 126.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.834 kcal (6) G-S(sol) free energy of system = (1) + (5) 118.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds