Wall clock time and date at job start Wed Apr 15 2020 11:43:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46898 * 111.00283 * 2 1 4 4 C 1.50702 * 109.46796 * 66.04964 * 3 2 1 5 5 H 1.08003 * 119.99822 * 359.97438 * 4 3 2 6 6 C 1.37873 * 119.99809 * 180.02562 * 4 3 2 7 7 N 1.31523 * 120.00246 * 179.97438 * 6 4 3 8 8 Si 1.86802 * 120.00116 * 359.97438 * 6 4 3 9 9 H 1.48496 * 109.47222 * 90.00275 * 8 6 4 10 10 H 1.48496 * 109.47118 * 210.00206 * 8 6 4 11 11 H 1.48501 * 109.47094 * 329.99916 * 8 6 4 12 12 C 1.46906 * 110.99573 * 236.04859 * 2 1 3 13 13 C 1.50701 * 109.46965 * 293.95399 * 12 2 1 14 14 N 1.30930 * 126.40483 * 89.71798 * 13 12 2 15 15 C 1.35390 * 105.57881 * 179.85796 * 14 13 12 16 16 C 1.47734 * 126.44853 * 180.14522 * 15 14 13 17 17 C 1.34851 * 125.27015 * 179.97438 * 16 15 14 18 18 C 1.37829 * 114.72109 * 179.79191 * 17 16 15 19 19 C 1.33715 * 115.06934 * 0.50714 * 18 17 16 20 20 S 1.75858 * 109.74829 * 359.72181 * 19 18 17 21 21 N 1.31034 * 107.10032 * 0.40536 * 15 14 13 22 22 O 1.21290 * 110.04383 * 359.73979 * 21 15 14 23 23 H 1.09004 * 109.47457 * 183.95363 * 1 2 3 24 24 H 1.09001 * 109.46615 * 303.95014 * 1 2 3 25 25 H 1.08990 * 109.47358 * 63.94680 * 1 2 3 26 26 H 1.08999 * 109.46988 * 186.04548 * 3 2 1 27 27 H 1.08996 * 109.46945 * 306.05035 * 3 2 1 28 28 H 0.96996 * 119.99953 * 179.97438 * 7 6 4 29 29 H 1.08993 * 109.47164 * 53.95342 * 12 2 1 30 30 H 1.08996 * 109.46920 * 173.95376 * 12 2 1 31 31 H 1.08003 * 122.63972 * 359.97438 * 17 16 15 32 32 H 1.08000 * 122.46460 * 180.23083 * 18 17 16 33 33 H 1.08004 * 125.12602 * 179.73027 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6371 2.0470 1.2985 5 1 1.0741 1.5113 2.0485 6 6 2.0270 3.3493 1.5286 7 7 1.7137 3.9392 2.6616 8 14 3.0001 4.2760 0.2310 9 1 2.0635 4.9797 -0.6815 10 1 3.8865 5.2676 0.8914 11 1 3.8241 3.3174 -0.5483 12 6 1.9954 -0.7660 -1.1377 13 6 1.6368 -2.2204 -0.9730 14 7 0.5504 -2.8071 -1.4087 15 6 0.6626 -4.1036 -1.0353 16 6 -0.3144 -5.1802 -1.2979 17 6 -0.1780 -6.4659 -0.9147 18 6 -1.2255 -7.2878 -1.2711 19 6 -2.2098 -6.6892 -1.9499 20 16 -1.8321 -4.9852 -2.1652 21 7 1.7981 -4.2226 -0.3924 22 8 2.3658 -3.1516 -0.3497 23 1 -0.3634 -1.0252 0.0709 24 1 -0.3632 0.5739 0.8525 25 1 -0.3633 0.4513 -0.9231 26 1 3.0798 1.3443 -0.1082 27 1 1.5611 1.9273 -0.8308 28 1 1.9884 4.8552 2.8236 29 1 1.5610 -0.3872 -2.0628 30 1 3.0796 -0.6611 -1.1758 31 1 0.6828 -6.8229 -0.3688 32 1 -1.2474 -8.3390 -1.0243 33 1 -3.1022 -7.1784 -2.3113 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000078645557.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:19 Heat of formation + Delta-G solvation = 95.971227 kcal Electronic energy + Delta-G solvation = -18479.884449 eV Core-core repulsion = 15442.495687 eV Total energy + Delta-G solvation = -3037.388762 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 279.078 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -46.64147 -38.94656 -38.73939 -36.82527 -34.83814 -33.81590 -30.74986 -30.15026 -28.85893 -26.30951 -25.95747 -24.58661 -23.16160 -22.12218 -19.98073 -19.47851 -19.27914 -18.91430 -17.71466 -16.85813 -16.58222 -16.25836 -16.15456 -15.68960 -14.84177 -14.49823 -14.47152 -14.26209 -13.78264 -13.63533 -13.55098 -13.24979 -13.11700 -12.82067 -12.68121 -12.57716 -12.31299 -12.21216 -11.79510 -11.75807 -11.53005 -11.40780 -10.75404 -9.68518 -9.56937 -9.25880 -8.24267 -6.29321 -0.62710 0.12139 0.37620 0.94005 1.13056 1.42164 1.44201 1.54468 1.68282 1.83917 2.33388 2.39595 2.94592 3.08934 3.22245 3.77716 4.10634 4.14089 4.27980 4.36630 4.40750 4.50418 4.56672 4.61496 4.75977 4.88161 4.99249 5.00873 5.13368 5.19741 5.35736 5.52122 5.86210 6.11400 6.53964 6.77330 6.96096 7.33910 8.92523 Molecular weight = 279.08amu Principal moments of inertia in cm(-1) A = 0.039253 B = 0.003388 C = 0.003301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 713.156942 B = 8261.701287 C = 8479.151215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.043 3.957 2 N -0.547 5.547 3 C 0.173 3.827 4 C -0.520 4.520 5 H 0.033 0.967 6 C 0.006 3.994 7 N -0.952 5.952 8 Si 0.950 3.050 9 H -0.268 1.268 10 H -0.288 1.288 11 H -0.234 1.234 12 C 0.137 3.863 13 C 0.220 3.780 14 N -0.491 5.491 15 C 0.232 3.768 16 C -0.172 4.172 17 C -0.085 4.085 18 C -0.146 4.146 19 C -0.185 4.185 20 S 0.167 5.833 21 N -0.391 5.391 22 O 0.081 5.919 23 H 0.054 0.946 24 H 0.053 0.947 25 H 0.036 0.964 26 H 0.051 0.949 27 H 0.005 0.995 28 H 0.266 0.734 29 H 0.101 0.899 30 H 0.136 0.864 31 H 0.147 0.853 32 H 0.179 0.821 33 H 0.207 0.793 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.667 -20.542 -14.182 25.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 N -0.272 5.272 3 C 0.047 3.953 4 C -0.559 4.559 5 H 0.051 0.949 6 C -0.191 4.191 7 N -0.592 5.592 8 Si 0.773 3.227 9 H -0.193 1.193 10 H -0.214 1.214 11 H -0.157 1.157 12 C 0.008 3.992 13 C -0.001 4.001 14 N -0.225 5.225 15 C -0.039 4.039 16 C -0.291 4.291 17 C -0.121 4.121 18 C -0.175 4.175 19 C -0.323 4.323 20 S 0.432 5.568 21 N -0.100 5.100 22 O 0.023 5.977 23 H 0.073 0.927 24 H 0.072 0.928 25 H 0.054 0.946 26 H 0.069 0.931 27 H 0.023 0.977 28 H 0.075 0.925 29 H 0.118 0.882 30 H 0.154 0.846 31 H 0.165 0.835 32 H 0.196 0.804 33 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -5.323 -20.132 -14.226 25.220 hybrid contribution 0.815 0.183 0.317 0.894 sum -4.508 -19.949 -13.910 24.734 Atomic orbital electron populations 1.22177 0.87127 1.00387 1.00810 1.61781 1.08727 1.16322 1.40414 1.20040 0.96394 0.83614 0.95226 1.21229 1.35115 0.97569 1.01942 0.94876 1.25900 0.96983 0.98389 0.97853 1.70067 1.48588 1.13889 1.26695 0.85675 0.79154 0.78871 0.79000 1.19347 1.21351 1.15722 1.20819 1.04223 0.79224 0.94921 1.28931 0.85458 0.96745 0.88950 1.72093 1.21343 1.03887 1.25219 1.23131 0.92843 0.90933 0.96957 1.21491 1.00055 0.94177 1.13356 1.20645 1.01184 0.90697 0.99584 1.20321 0.92845 1.02858 1.01478 1.26508 1.05094 0.96036 1.04613 1.84530 1.11213 1.08842 1.52255 1.74963 1.09957 1.03769 1.21328 1.85267 1.42640 1.13102 1.56701 0.92737 0.92781 0.94565 0.93133 0.97704 0.92470 0.88158 0.84578 0.83514 0.80359 0.77580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.66 9.18 127.69 1.17 2.84 16 2 N -0.55 -21.21 4.74 -931.66 -4.42 -25.63 16 3 C 0.17 7.52 3.79 85.56 0.32 7.85 16 4 C -0.52 -28.96 9.01 25.60 0.23 -28.73 16 5 H 0.03 2.11 7.37 -2.91 -0.02 2.08 16 6 C 0.01 0.33 5.47 84.65 0.46 0.79 16 7 N -0.95 -58.74 13.96 21.45 0.30 -58.44 16 8 Si 0.95 41.46 27.47 68.60 1.88 43.34 16 9 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 10 H -0.29 -12.59 7.11 99.48 0.71 -11.89 16 11 H -0.23 -8.98 6.54 99.48 0.65 -8.33 16 12 C 0.14 3.97 5.59 85.56 0.48 4.45 16 13 C 0.22 6.88 7.11 88.35 0.63 7.51 16 14 N -0.49 -15.88 10.86 -302.29 -3.28 -19.16 16 15 C 0.23 7.34 8.02 136.96 1.10 8.44 16 16 C -0.17 -4.48 6.44 24.00 0.15 -4.32 16 17 C -0.09 -1.78 10.05 21.39 0.22 -1.56 16 18 C -0.15 -2.06 10.16 21.15 0.21 -1.85 16 19 C -0.19 -2.42 11.23 66.79 0.75 -1.67 16 20 S 0.17 3.40 23.32 -56.49 -1.32 2.08 16 21 N -0.39 -12.91 12.16 -58.79 -0.72 -13.63 16 22 O 0.08 2.64 11.29 74.50 0.84 3.48 16 23 H 0.05 2.01 6.73 -2.38 -0.02 2.00 16 24 H 0.05 2.39 6.76 -2.39 -0.02 2.38 16 25 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 26 H 0.05 2.06 6.99 -2.39 -0.02 2.04 16 27 H 0.01 0.22 7.55 -2.39 -0.02 0.20 16 28 H 0.27 15.33 8.31 -92.71 -0.77 14.56 16 29 H 0.10 2.50 8.12 -2.39 -0.02 2.48 16 30 H 0.14 3.22 7.93 -2.39 -0.02 3.20 16 31 H 0.15 2.95 8.06 -2.91 -0.02 2.93 16 32 H 0.18 1.36 8.06 -2.91 -0.02 1.33 16 33 H 0.21 1.14 8.06 -2.91 -0.02 1.12 16 Total: -1.00 -69.55 302.68 0.10 -69.45 By element: Atomic # 1 Polarization: 3.69 SS G_CDS: 1.08 Total: 4.77 kcal Atomic # 6 Polarization: -11.99 SS G_CDS: 5.73 Total: -6.26 kcal Atomic # 7 Polarization: -108.74 SS G_CDS: -8.12 Total: -116.86 kcal Atomic # 8 Polarization: 2.64 SS G_CDS: 0.84 Total: 3.48 kcal Atomic # 14 Polarization: 41.46 SS G_CDS: 1.88 Total: 43.34 kcal Atomic # 16 Polarization: 3.40 SS G_CDS: -1.32 Total: 2.08 kcal Total: -69.55 0.10 -69.45 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078645557.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 165.420 kcal (2) G-P(sol) polarization free energy of solvation -69.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.449 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds