Wall clock time and date at job start Wed Apr 15 2020 11:43:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46892 * 1 3 3 C 1.46910 * 110.99795 * 2 1 4 4 C 1.50700 * 109.47071 * 66.03987 * 3 2 1 5 5 H 1.08001 * 120.00189 * 0.02562 * 4 3 2 6 6 C 1.37884 * 119.99718 * 180.02562 * 4 3 2 7 7 N 1.31513 * 119.99882 * 180.02562 * 6 4 3 8 8 Si 1.86794 * 119.99906 * 0.02562 * 6 4 3 9 9 H 1.48506 * 109.47121 * 90.00168 * 8 6 4 10 10 H 1.48496 * 109.47028 * 209.99539 * 8 6 4 11 11 H 1.48494 * 109.47506 * 329.99873 * 8 6 4 12 12 C 1.46893 * 111.00715 * 236.04228 * 2 1 3 13 13 C 1.50697 * 109.47027 * 293.95405 * 12 2 1 14 14 N 1.30967 * 126.42578 * 89.99983 * 13 12 2 15 15 C 1.35268 * 105.58193 * 180.02562 * 14 13 12 16 16 C 1.48230 * 126.43046 * 180.02562 * 15 14 13 17 17 C 1.39587 * 122.85010 * 179.71607 * 16 15 14 18 18 C 1.33162 * 113.73976 * 179.76927 * 17 16 15 19 19 S 1.75743 * 109.74332 * 0.47161 * 18 17 16 20 20 C 1.34460 * 122.84776 * 0.02562 * 16 15 14 21 21 N 1.30874 * 107.14647 * 359.97438 * 15 14 13 22 22 O 1.21290 * 110.07323 * 0.02562 * 21 15 14 23 23 H 1.09004 * 109.47094 * 183.95581 * 1 2 3 24 24 H 1.08995 * 109.47678 * 303.95652 * 1 2 3 25 25 H 1.09000 * 109.47600 * 63.96184 * 1 2 3 26 26 H 1.08998 * 109.47411 * 186.04148 * 3 2 1 27 27 H 1.09003 * 109.46818 * 306.04321 * 3 2 1 28 28 H 0.96996 * 119.99945 * 180.02562 * 7 6 4 29 29 H 1.08995 * 109.47322 * 173.94889 * 12 2 1 30 30 H 1.09008 * 109.46881 * 53.95161 * 12 2 1 31 31 H 1.08004 * 123.13323 * 359.97271 * 17 16 15 32 32 H 1.07998 * 125.12763 * 180.17508 * 18 17 16 33 33 H 1.07998 * 124.73929 * 359.97438 * 20 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9953 1.3715 0.0000 4 6 1.6367 2.0473 1.2984 5 1 1.0743 1.5114 2.0487 6 6 2.0265 3.3497 1.5284 7 7 1.7139 3.9393 2.6616 8 14 2.9985 4.2767 0.2303 9 1 2.0610 4.9804 -0.6816 10 1 3.8850 5.2686 0.8902 11 1 3.8221 3.3184 -0.5498 12 6 1.9955 -0.7660 -1.1374 13 6 1.6371 -2.2204 -0.9726 14 7 0.5531 -2.8089 -1.4129 15 6 0.6627 -4.1028 -1.0342 16 6 -0.3174 -5.1832 -1.2976 17 6 -0.1249 -6.4997 -0.8753 18 6 -1.1212 -7.3195 -1.2048 19 16 -2.3526 -6.4315 -2.0901 20 6 -1.4645 -4.9795 -1.9688 21 7 1.7971 -4.2223 -0.3926 22 8 2.3657 -3.1518 -0.3495 23 1 -0.3633 -1.0252 0.0709 24 1 -0.3634 0.5740 0.8523 25 1 -0.3634 0.4511 -0.9233 26 1 3.0796 1.3446 -0.1082 27 1 1.5610 1.9274 -0.8310 28 1 1.9878 4.8556 2.8233 29 1 3.0797 -0.6610 -1.1754 30 1 1.5612 -0.3873 -2.0627 31 1 0.7491 -6.8226 -0.3291 32 1 -1.1636 -8.3723 -0.9682 33 1 -1.7801 -4.0295 -2.3740 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000078646826.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:21 Heat of formation + Delta-G solvation = 93.782100 kcal Electronic energy + Delta-G solvation = -18535.598123 eV Core-core repulsion = 15498.114432 eV Total energy + Delta-G solvation = -3037.483690 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 279.078 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -46.58872 -39.33020 -38.72513 -36.51978 -34.77712 -33.57518 -30.74650 -30.26090 -28.91050 -26.66698 -26.00885 -24.03998 -23.33229 -22.14597 -20.25090 -19.22883 -19.08650 -18.69930 -18.31915 -16.75222 -16.53830 -16.22265 -16.16305 -15.71267 -14.58123 -14.56075 -14.43263 -14.24031 -13.95399 -13.65648 -13.55476 -13.34931 -13.11763 -12.76972 -12.67770 -12.57275 -12.21318 -12.20657 -11.95284 -11.75552 -11.51231 -11.32831 -10.75590 -9.94928 -9.34675 -9.24737 -8.24480 -6.29465 -0.38963 0.13970 0.57685 0.84424 0.88737 1.41857 1.44011 1.54320 1.73766 1.95898 2.39429 2.48567 2.98245 3.08765 3.22659 3.81768 3.97360 4.15778 4.30377 4.40054 4.42763 4.47545 4.57075 4.61191 4.76328 4.88337 4.97826 5.00381 5.13576 5.15958 5.27247 5.52195 5.86616 6.12399 6.54196 6.77160 7.04200 7.33726 8.92343 Molecular weight = 279.08amu Principal moments of inertia in cm(-1) A = 0.040051 B = 0.003248 C = 0.003165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 698.936087 B = 8619.731879 C = 8844.500125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.044 3.956 2 N -0.547 5.547 3 C 0.173 3.827 4 C -0.520 4.520 5 H 0.033 0.967 6 C 0.006 3.994 7 N -0.952 5.952 8 Si 0.950 3.050 9 H -0.268 1.268 10 H -0.287 1.287 11 H -0.235 1.235 12 C 0.138 3.862 13 C 0.214 3.786 14 N -0.488 5.488 15 C 0.223 3.777 16 C -0.072 4.072 17 C -0.131 4.131 18 C -0.221 4.221 19 S 0.258 5.742 20 C -0.217 4.217 21 N -0.398 5.398 22 O 0.076 5.924 23 H 0.055 0.945 24 H 0.053 0.947 25 H 0.036 0.964 26 H 0.050 0.950 27 H 0.005 0.995 28 H 0.266 0.734 29 H 0.134 0.866 30 H 0.100 0.900 31 H 0.145 0.855 32 H 0.202 0.798 33 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.091 -20.763 -14.332 25.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 N -0.273 5.273 3 C 0.047 3.953 4 C -0.559 4.559 5 H 0.051 0.949 6 C -0.191 4.191 7 N -0.592 5.592 8 Si 0.773 3.227 9 H -0.193 1.193 10 H -0.213 1.213 11 H -0.158 1.158 12 C 0.009 3.991 13 C -0.007 4.007 14 N -0.223 5.223 15 C -0.049 4.049 16 C -0.088 4.088 17 C -0.160 4.160 18 C -0.356 4.356 19 S 0.523 5.477 20 C -0.357 4.357 21 N -0.108 5.108 22 O 0.019 5.981 23 H 0.073 0.927 24 H 0.072 0.928 25 H 0.054 0.946 26 H 0.068 0.932 27 H 0.023 0.977 28 H 0.075 0.925 29 H 0.152 0.848 30 H 0.118 0.882 31 H 0.162 0.838 32 H 0.219 0.781 33 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -6.372 -22.005 -14.318 27.016 hybrid contribution 1.552 1.878 0.296 2.454 sum -4.820 -20.127 -14.022 24.999 Atomic orbital electron populations 1.22171 0.87108 1.00414 1.00766 1.61767 1.08756 1.16269 1.40505 1.20039 0.96357 0.83662 0.95217 1.21232 1.35144 0.97562 1.01938 0.94885 1.25902 0.96972 0.98398 0.97859 1.70063 1.48609 1.13878 1.26675 0.85672 0.79155 0.78857 0.79001 1.19313 1.21338 1.15769 1.20783 1.04083 0.79374 0.94854 1.28940 0.85788 0.96741 0.89203 1.72008 1.21195 1.04165 1.24911 1.23892 0.93076 0.91539 0.96361 1.16621 0.94175 0.91148 1.06844 1.20152 1.01728 0.90920 1.03226 1.26033 0.97816 1.05553 1.06210 1.82907 1.19818 0.94776 1.50198 1.25397 0.98929 1.06735 1.04661 1.74887 1.10351 1.03767 1.21767 1.85258 1.42757 1.13191 1.56848 0.92662 0.92843 0.94567 0.93214 0.97713 0.92464 0.84803 0.88222 0.83755 0.78067 0.80854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.68 9.18 127.69 1.17 2.85 16 2 N -0.55 -21.33 4.74 -931.67 -4.42 -25.75 16 3 C 0.17 7.56 3.79 85.56 0.32 7.88 16 4 C -0.52 -29.05 9.01 25.60 0.23 -28.81 16 5 H 0.03 2.10 7.37 -2.91 -0.02 2.08 16 6 C 0.01 0.33 5.47 84.66 0.46 0.79 16 7 N -0.95 -58.79 13.96 21.45 0.30 -58.49 16 8 Si 0.95 41.54 27.47 68.60 1.88 43.42 16 9 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 10 H -0.29 -12.60 7.11 99.48 0.71 -11.90 16 11 H -0.23 -9.03 6.54 99.48 0.65 -8.38 16 12 C 0.14 4.04 5.59 85.56 0.48 4.51 16 13 C 0.21 6.75 7.11 88.35 0.63 7.38 16 14 N -0.49 -15.66 10.77 -302.36 -3.26 -18.92 16 15 C 0.22 7.08 7.88 137.19 1.08 8.16 16 16 C -0.07 -1.85 5.80 -21.16 -0.12 -1.97 16 17 C -0.13 -2.76 10.03 21.45 0.22 -2.55 16 18 C -0.22 -3.13 11.20 66.68 0.75 -2.38 16 19 S 0.26 3.41 23.09 -56.49 -1.30 2.11 16 20 C -0.22 -4.54 10.67 66.96 0.71 -3.83 16 21 N -0.40 -13.34 12.11 -58.95 -0.71 -14.05 16 22 O 0.08 2.54 11.29 74.64 0.84 3.38 16 23 H 0.05 2.03 6.74 -2.39 -0.02 2.01 16 24 H 0.05 2.36 6.76 -2.39 -0.02 2.35 16 25 H 0.04 1.25 8.14 -2.39 -0.02 1.23 16 26 H 0.05 2.04 6.99 -2.39 -0.02 2.02 16 27 H 0.01 0.21 7.55 -2.39 -0.02 0.19 16 28 H 0.27 15.35 8.31 -92.71 -0.77 14.58 16 29 H 0.13 3.23 7.93 -2.39 -0.02 3.21 16 30 H 0.10 2.50 8.12 -2.38 -0.02 2.48 16 31 H 0.14 3.06 8.06 -2.91 -0.02 3.03 16 32 H 0.20 1.48 8.06 -2.91 -0.02 1.45 16 33 H 0.17 3.57 8.06 -2.91 -0.02 3.55 16 Total: -1.00 -69.28 302.01 0.34 -68.94 By element: Atomic # 1 Polarization: 6.27 SS G_CDS: 1.08 Total: 7.34 kcal Atomic # 6 Polarization: -13.91 SS G_CDS: 5.93 Total: -7.97 kcal Atomic # 7 Polarization: -109.13 SS G_CDS: -8.09 Total: -117.22 kcal Atomic # 8 Polarization: 2.54 SS G_CDS: 0.84 Total: 3.38 kcal Atomic # 14 Polarization: 41.54 SS G_CDS: 1.88 Total: 43.42 kcal Atomic # 16 Polarization: 3.41 SS G_CDS: -1.30 Total: 2.11 kcal Total: -69.28 0.34 -68.94 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078646826.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 162.720 kcal (2) G-P(sol) polarization free energy of solvation -69.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.938 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds