Wall clock time and date at job start Wed Apr 15 2020 11:43:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46896 * 111.00499 * 2 1 4 4 C 1.50702 * 109.47222 * 293.95839 * 3 2 1 5 5 H 1.08000 * 119.99688 * 359.97438 * 4 3 2 6 6 C 1.37872 * 120.00246 * 180.02562 * 4 3 2 7 7 N 1.31518 * 119.99696 * 359.97438 * 6 4 3 8 8 Si 1.86803 * 120.00085 * 179.97438 * 6 4 3 9 9 H 1.48496 * 109.47125 * 359.97438 * 8 6 4 10 10 H 1.48504 * 109.46917 * 119.99953 * 8 6 4 11 11 H 1.48504 * 109.46760 * 239.99733 * 8 6 4 12 12 C 1.46902 * 111.00120 * 123.95739 * 2 1 3 13 13 C 1.50706 * 109.46973 * 66.04191 * 12 2 1 14 14 O 1.21281 * 120.00079 * 359.97438 * 13 12 2 15 15 N 1.34781 * 119.99493 * 180.02562 * 13 12 2 16 16 C 1.38805 * 119.99539 * 180.02562 * 15 13 12 17 17 S 1.70442 * 124.64485 * 359.74118 * 16 15 13 18 18 C 1.75471 * 92.51987 * 180.02562 * 17 16 15 19 19 C 1.32623 * 110.77734 * 0.02562 * 18 17 16 20 20 C 1.36985 * 124.64439 * 179.44564 * 16 15 13 21 21 C 1.43195 * 123.57871 * 359.97438 * 20 16 15 22 22 N 7.20156 * 105.45810 * 136.55278 * 2 1 3 23 23 H 1.09002 * 109.46894 * 296.04687 * 1 2 3 24 24 H 1.08997 * 109.47103 * 56.03841 * 1 2 3 25 25 H 1.08997 * 109.47134 * 176.04821 * 1 2 3 26 26 H 1.08996 * 109.47066 * 53.95778 * 3 2 1 27 27 H 1.08995 * 109.47326 * 173.95647 * 3 2 1 28 28 H 0.97009 * 119.99636 * 180.02562 * 7 6 4 29 29 H 1.08995 * 109.47293 * 306.04202 * 12 2 1 30 30 H 1.09001 * 109.47104 * 186.04003 * 12 2 1 31 31 H 0.96996 * 120.00066 * 359.72079 * 15 13 12 32 32 H 1.07999 * 124.61463 * 179.97438 * 18 17 16 33 33 H 1.08000 * 123.42338 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3713 0.0000 4 6 1.6370 2.0471 -1.2984 5 1 1.0746 1.5113 -2.0487 6 6 2.0278 3.3491 -1.5289 7 7 2.7131 4.0014 -0.6153 8 14 1.5840 4.1865 -3.1386 9 1 0.8166 3.2439 -3.9918 10 1 0.7571 5.3881 -2.8599 11 1 2.8260 4.5929 -3.8440 12 6 1.9955 -0.7661 1.1375 13 6 1.6368 -2.2205 0.9727 14 8 1.0045 -2.5831 0.0034 15 7 2.0180 -3.1181 1.9032 16 6 1.6881 -4.4578 1.7511 17 16 0.8023 -5.0950 0.4418 18 6 0.8848 -6.7274 1.0801 19 6 1.5540 -6.7517 2.2248 20 6 2.0349 -5.4497 2.6299 21 6 2.7891 -5.2207 3.8254 22 7 3.3885 -5.0393 4.7733 23 1 -0.3633 0.4513 0.9233 24 1 -0.3633 0.5741 -0.8523 25 1 -0.3633 -1.0252 -0.0708 26 1 1.5613 1.9272 0.8309 27 1 3.0798 1.3443 0.1082 28 1 2.9878 4.9176 -0.7774 29 1 1.5612 -0.3874 2.0628 30 1 3.0798 -0.6612 1.1755 31 1 2.5265 -2.8285 2.6767 32 1 0.4490 -7.5943 0.6057 33 1 1.7273 -7.6534 2.7935 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078646890.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:23 Heat of formation + Delta-G solvation = 38.643940 kcal Electronic energy + Delta-G solvation = -18377.422731 eV Core-core repulsion = 15337.548071 eV Total energy + Delta-G solvation = -3039.874660 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 279.078 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.52580 -38.36597 -36.34168 -35.98194 -34.79705 -32.60567 -29.88138 -28.14114 -27.03452 -25.15277 -24.02366 -21.87331 -21.17336 -20.32916 -19.00302 -17.84901 -16.47980 -16.18965 -15.93219 -15.41082 -14.78711 -14.59102 -14.52389 -14.20035 -14.08571 -13.71010 -13.37857 -12.87123 -12.72087 -12.63000 -12.11913 -11.97467 -11.69228 -11.29760 -11.20834 -11.13603 -10.89259 -10.73092 -10.57254 -10.05974 -9.72761 -9.26539 -8.61616 -8.51290 -8.33730 -7.44406 -6.10216 -4.11417 0.53461 1.06846 1.78274 1.80522 2.42768 2.53663 2.60970 3.28232 3.32983 3.35961 3.41484 3.93356 4.37123 4.66320 4.74107 4.83452 4.97875 5.26435 5.45392 5.46362 5.54574 5.68032 5.92639 5.98549 6.15796 6.25406 6.71999 6.81535 7.10155 7.16578 7.37267 7.66911 7.75506 7.93752 8.03739 8.39128 8.96427 9.53300 11.00846 Molecular weight = 279.08amu Principal moments of inertia in cm(-1) A = 0.033096 B = 0.003527 C = 0.003255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 845.822590 B = 7936.932904 C = 8599.694681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 N -0.522 5.522 3 C 0.193 3.807 4 C -0.507 4.507 5 H 0.067 0.933 6 C 0.055 3.945 7 N -0.899 5.899 8 Si 0.900 3.100 9 H -0.271 1.271 10 H -0.285 1.285 11 H -0.284 1.284 12 C 0.042 3.958 13 C 0.509 3.491 14 O -0.473 6.473 15 N -0.640 5.640 16 C 0.074 3.926 17 S 0.325 5.675 18 C -0.292 4.292 19 C -0.071 4.071 20 C -0.141 4.141 21 C 0.279 3.721 22 N -0.432 5.432 23 H 0.008 0.992 24 H 0.078 0.922 25 H 0.063 0.937 26 H -0.005 1.005 27 H 0.032 0.968 28 H 0.261 0.739 29 H 0.062 0.938 30 H 0.107 0.893 31 H 0.419 0.581 32 H 0.170 0.830 33 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.856 -19.204 4.908 20.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 N -0.247 5.247 3 C 0.068 3.932 4 C -0.546 4.546 5 H 0.085 0.915 6 C -0.146 4.146 7 N -0.539 5.539 8 Si 0.728 3.272 9 H -0.195 1.195 10 H -0.211 1.211 11 H -0.210 1.210 12 C -0.090 4.090 13 C 0.297 3.703 14 O -0.344 6.344 15 N -0.285 5.285 16 C -0.148 4.148 17 S 0.586 5.414 18 C -0.428 4.428 19 C -0.101 4.101 20 C -0.162 4.162 21 C -0.036 4.036 22 N -0.110 5.110 23 H 0.026 0.974 24 H 0.097 0.903 25 H 0.082 0.918 26 H 0.013 0.987 27 H 0.050 0.950 28 H 0.071 0.929 29 H 0.080 0.920 30 H 0.125 0.875 31 H 0.256 0.744 32 H 0.187 0.813 33 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -3.793 -18.489 3.948 19.282 hybrid contribution 0.427 0.378 1.493 1.598 sum -3.366 -18.111 5.441 19.207 Atomic orbital electron populations 1.22408 0.87761 1.01174 1.00499 1.61926 1.08058 1.17710 1.37029 1.19822 0.95471 0.80603 0.97278 1.21157 1.34974 0.96903 1.01532 0.91516 1.24987 0.95188 0.97296 0.97137 1.69964 1.38326 1.11498 1.34087 0.86406 0.78203 0.79274 0.83362 1.19529 1.21088 1.20966 1.21935 1.02824 0.88022 0.96243 1.21751 0.78345 0.89074 0.81148 1.90590 1.36726 1.78635 1.28497 1.43304 1.54939 1.03445 1.26763 1.22224 1.02526 0.88028 1.02055 1.84592 1.47189 0.94145 1.15438 1.25995 1.09857 1.04640 1.02305 1.20578 0.98028 0.95092 0.96378 1.15977 1.12408 0.93250 0.94585 1.24955 0.92543 0.93973 0.92158 1.81288 1.11332 1.07060 1.11299 0.97351 0.90282 0.91831 0.98729 0.94993 0.92892 0.91985 0.87459 0.74398 0.81271 0.83539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.57 9.03 60.06 0.54 1.11 16 2 N -0.52 -10.70 4.49 -245.83 -1.10 -11.80 16 3 C 0.19 4.75 4.72 -4.98 -0.02 4.72 16 4 C -0.51 -13.83 8.46 -34.44 -0.29 -14.12 16 5 H 0.07 1.83 7.12 -52.49 -0.37 1.45 16 6 C 0.06 1.53 5.46 -17.82 -0.10 1.43 16 7 N -0.90 -25.95 13.29 55.43 0.74 -25.22 16 8 Si 0.90 21.23 29.54 -169.99 -5.02 16.21 16 9 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 10 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 11 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 12 C 0.04 0.64 5.45 -4.97 -0.03 0.62 16 13 C 0.51 7.16 7.52 -10.98 -0.08 7.07 16 14 O -0.47 -7.70 11.74 5.56 0.07 -7.64 16 15 N -0.64 -7.20 5.37 -11.61 -0.06 -7.27 16 16 C 0.07 0.82 6.98 -14.84 -0.10 0.71 16 17 S 0.33 3.30 19.96 -107.50 -2.15 1.15 16 18 C -0.29 -2.22 11.10 28.83 0.32 -1.90 16 19 C -0.07 -0.58 10.35 -38.98 -0.40 -0.98 16 20 C -0.14 -1.44 5.88 -105.93 -0.62 -2.06 16 21 C 0.28 3.24 14.98 -22.47 -0.34 2.91 16 22 N -0.43 -5.84 18.54 41.84 0.78 -5.06 16 23 H 0.01 0.15 8.14 -51.93 -0.42 -0.28 16 24 H 0.08 1.64 6.76 -51.93 -0.35 1.29 16 25 H 0.06 1.13 5.88 -51.93 -0.31 0.82 16 26 H -0.01 -0.13 8.12 -51.93 -0.42 -0.55 16 27 H 0.03 0.83 7.93 -51.93 -0.41 0.41 16 28 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 29 H 0.06 0.86 8.12 -51.93 -0.42 0.44 16 30 H 0.11 1.53 7.93 -51.93 -0.41 1.12 16 31 H 0.42 3.92 8.15 -40.82 -0.33 3.59 16 32 H 0.17 0.85 8.06 -52.49 -0.42 0.43 16 33 H 0.15 0.89 8.06 -52.49 -0.42 0.47 16 LS Contribution 306.74 15.07 4.62 4.62 Total: -1.00 -31.20 306.74 -6.69 -37.90 By element: Atomic # 1 Polarization: 1.03 SS G_CDS: -3.43 Total: -2.40 kcal Atomic # 6 Polarization: 0.63 SS G_CDS: -1.13 Total: -0.49 kcal Atomic # 7 Polarization: -49.70 SS G_CDS: 0.35 Total: -49.35 kcal Atomic # 8 Polarization: -7.70 SS G_CDS: 0.07 Total: -7.64 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Atomic # 16 Polarization: 3.30 SS G_CDS: -2.15 Total: 1.15 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -31.20 -6.69 -37.90 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078646890.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.540 kcal (2) G-P(sol) polarization free energy of solvation -31.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.896 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds