Wall clock time and date at job start Wed Apr 15 2020 11:43:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46896 * 111.00499 * 2 1 4 4 C 1.50702 * 109.47222 * 293.95839 * 3 2 1 5 5 H 1.08000 * 119.99688 * 359.97438 * 4 3 2 6 6 C 1.37872 * 120.00246 * 180.02562 * 4 3 2 7 7 N 1.31518 * 119.99696 * 359.97438 * 6 4 3 8 8 Si 1.86803 * 120.00085 * 179.97438 * 6 4 3 9 9 H 1.48496 * 109.47125 * 359.97438 * 8 6 4 10 10 H 1.48504 * 109.46917 * 119.99953 * 8 6 4 11 11 H 1.48504 * 109.46760 * 239.99733 * 8 6 4 12 12 C 1.46902 * 111.00120 * 123.95739 * 2 1 3 13 13 C 1.50706 * 109.46973 * 66.04191 * 12 2 1 14 14 O 1.21281 * 120.00079 * 359.97438 * 13 12 2 15 15 N 1.34781 * 119.99493 * 180.02562 * 13 12 2 16 16 C 1.38805 * 119.99539 * 180.02562 * 15 13 12 17 17 S 1.70442 * 124.64485 * 359.74118 * 16 15 13 18 18 C 1.75471 * 92.51987 * 180.02562 * 17 16 15 19 19 C 1.32623 * 110.77734 * 0.02562 * 18 17 16 20 20 C 1.36985 * 124.64439 * 179.44564 * 16 15 13 21 21 C 1.43195 * 123.57871 * 359.97438 * 20 16 15 22 22 N 7.20156 * 105.45810 * 136.55278 * 2 1 3 23 23 H 1.09002 * 109.46894 * 296.04687 * 1 2 3 24 24 H 1.08997 * 109.47103 * 56.03841 * 1 2 3 25 25 H 1.08997 * 109.47134 * 176.04821 * 1 2 3 26 26 H 1.08996 * 109.47066 * 53.95778 * 3 2 1 27 27 H 1.08995 * 109.47326 * 173.95647 * 3 2 1 28 28 H 0.97009 * 119.99636 * 180.02562 * 7 6 4 29 29 H 1.08995 * 109.47293 * 306.04202 * 12 2 1 30 30 H 1.09001 * 109.47104 * 186.04003 * 12 2 1 31 31 H 0.96996 * 120.00066 * 359.72079 * 15 13 12 32 32 H 1.07999 * 124.61463 * 179.97438 * 18 17 16 33 33 H 1.08000 * 123.42338 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3713 0.0000 4 6 1.6370 2.0471 -1.2984 5 1 1.0746 1.5113 -2.0487 6 6 2.0278 3.3491 -1.5289 7 7 2.7131 4.0014 -0.6153 8 14 1.5840 4.1865 -3.1386 9 1 0.8166 3.2439 -3.9918 10 1 0.7571 5.3881 -2.8599 11 1 2.8260 4.5929 -3.8440 12 6 1.9955 -0.7661 1.1375 13 6 1.6368 -2.2205 0.9727 14 8 1.0045 -2.5831 0.0034 15 7 2.0180 -3.1181 1.9032 16 6 1.6881 -4.4578 1.7511 17 16 0.8023 -5.0950 0.4418 18 6 0.8848 -6.7274 1.0801 19 6 1.5540 -6.7517 2.2248 20 6 2.0349 -5.4497 2.6299 21 6 2.7891 -5.2207 3.8254 22 7 3.3885 -5.0393 4.7733 23 1 -0.3633 0.4513 0.9233 24 1 -0.3633 0.5741 -0.8523 25 1 -0.3633 -1.0252 -0.0708 26 1 1.5613 1.9272 0.8309 27 1 3.0798 1.3443 0.1082 28 1 2.9878 4.9176 -0.7774 29 1 1.5612 -0.3874 2.0628 30 1 3.0798 -0.6612 1.1755 31 1 2.5265 -2.8285 2.6767 32 1 0.4490 -7.5943 0.6057 33 1 1.7273 -7.6534 2.7935 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000078646890.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:23 Heat of formation + Delta-G solvation = 17.267854 kcal Electronic energy + Delta-G solvation = -18378.349668 eV Core-core repulsion = 15337.548071 eV Total energy + Delta-G solvation = -3040.801597 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 279.078 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.59728 -39.28043 -37.84450 -36.97746 -35.74641 -34.64397 -30.97729 -29.54504 -28.61837 -26.43869 -25.41469 -23.09247 -22.29296 -21.52318 -19.91991 -18.97636 -18.37817 -17.23394 -17.06513 -16.56669 -16.38349 -15.84260 -15.59697 -15.52299 -15.13692 -15.02091 -14.37467 -14.24733 -13.76454 -13.72618 -13.68469 -13.29526 -12.93160 -12.81542 -12.69522 -12.60746 -12.47889 -12.09207 -11.95787 -11.77482 -11.36816 -10.76035 -10.61068 -9.38926 -9.17869 -9.06503 -8.20880 -6.29425 -0.31789 0.29112 1.06300 1.09129 1.35763 1.42192 1.43653 1.56333 1.62069 1.65703 2.41971 2.45352 3.05853 3.12726 3.30123 3.57265 3.99307 4.20567 4.30333 4.34206 4.54557 4.69500 4.79264 4.94360 5.13536 5.16473 5.23251 5.29162 5.32214 5.63734 5.84035 6.03116 6.22794 6.45968 6.50853 6.73951 6.86080 7.40047 8.90171 Molecular weight = 279.08amu Principal moments of inertia in cm(-1) A = 0.033096 B = 0.003527 C = 0.003255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 845.822590 B = 7936.932904 C = 8599.694681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 N -0.537 5.537 3 C 0.207 3.793 4 C -0.523 4.523 5 H 0.061 0.939 6 C 0.005 3.995 7 N -0.932 5.932 8 Si 0.966 3.034 9 H -0.265 1.265 10 H -0.278 1.278 11 H -0.279 1.279 12 C 0.038 3.962 13 C 0.518 3.482 14 O -0.499 6.499 15 N -0.630 5.630 16 C 0.054 3.946 17 S 0.301 5.699 18 C -0.266 4.266 19 C -0.076 4.076 20 C -0.135 4.135 21 C 0.296 3.704 22 N -0.467 5.467 23 H 0.014 0.986 24 H 0.057 0.943 25 H 0.080 0.920 26 H -0.026 1.026 27 H 0.015 0.985 28 H 0.265 0.735 29 H 0.081 0.919 30 H 0.117 0.883 31 H 0.427 0.573 32 H 0.202 0.798 33 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.440 -21.047 4.631 22.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 N -0.261 5.261 3 C 0.082 3.918 4 C -0.561 4.561 5 H 0.079 0.921 6 C -0.194 4.194 7 N -0.573 5.573 8 Si 0.791 3.209 9 H -0.190 1.190 10 H -0.204 1.204 11 H -0.205 1.205 12 C -0.093 4.093 13 C 0.306 3.694 14 O -0.373 6.373 15 N -0.274 5.274 16 C -0.168 4.168 17 S 0.562 5.438 18 C -0.402 4.402 19 C -0.105 4.105 20 C -0.157 4.157 21 C -0.018 4.018 22 N -0.145 5.145 23 H 0.033 0.967 24 H 0.076 0.924 25 H 0.098 0.902 26 H -0.009 1.009 27 H 0.033 0.967 28 H 0.073 0.927 29 H 0.099 0.901 30 H 0.135 0.865 31 H 0.266 0.734 32 H 0.219 0.781 33 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -4.377 -20.373 3.695 21.163 hybrid contribution 0.602 0.802 1.634 1.917 sum -3.775 -19.571 5.329 20.632 Atomic orbital electron populations 1.22319 0.87066 1.01802 0.99831 1.61730 1.08791 1.15584 1.40039 1.19460 0.94241 0.82679 0.95455 1.21468 1.34814 0.97444 1.02421 0.92129 1.25828 0.95032 0.97994 1.00501 1.70067 1.39320 1.11922 1.35967 0.85378 0.78060 0.78206 0.79255 1.18962 1.20418 1.20452 1.21981 1.03433 0.88667 0.95231 1.21223 0.78241 0.88651 0.81299 1.90592 1.38035 1.79064 1.29568 1.42953 1.54623 1.03533 1.26329 1.22335 1.03862 0.87667 1.02907 1.84722 1.47086 0.96260 1.15708 1.26247 1.08564 1.03820 1.01524 1.20855 0.97887 0.94921 0.96814 1.16205 1.11717 0.94124 0.93648 1.25112 0.91878 0.92914 0.91945 1.81310 1.12521 1.08235 1.12462 0.96702 0.92444 0.90198 1.00866 0.96730 0.92659 0.90083 0.86487 0.73435 0.78120 0.80967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.45 9.03 127.69 1.15 2.61 16 2 N -0.54 -22.14 4.49 -931.67 -4.18 -26.32 16 3 C 0.21 10.46 4.72 85.56 0.40 10.86 16 4 C -0.52 -29.00 8.46 25.60 0.22 -28.78 16 5 H 0.06 3.36 7.12 -2.91 -0.02 3.34 16 6 C 0.00 0.26 5.46 84.65 0.46 0.72 16 7 N -0.93 -54.49 13.29 21.45 0.28 -54.20 16 8 Si 0.97 43.68 29.54 68.60 2.03 45.71 16 9 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 10 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 11 H -0.28 -12.32 7.11 99.48 0.71 -11.62 16 12 C 0.04 1.16 5.45 85.56 0.47 1.63 16 13 C 0.52 14.16 7.52 87.66 0.66 14.82 16 14 O -0.50 -15.93 11.74 -3.03 -0.04 -15.96 16 15 N -0.63 -13.47 5.37 -309.03 -1.66 -15.13 16 16 C 0.05 1.10 6.98 83.29 0.58 1.68 16 17 S 0.30 5.57 19.96 -56.49 -1.13 4.44 16 18 C -0.27 -3.12 11.10 66.66 0.74 -2.38 16 19 C -0.08 -0.99 10.35 22.73 0.24 -0.75 16 20 C -0.13 -2.47 5.88 -20.71 -0.12 -2.59 16 21 C 0.30 6.43 14.98 88.33 1.32 7.75 16 22 N -0.47 -12.16 18.54 19.00 0.35 -11.80 16 23 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16 24 H 0.06 2.42 6.76 -2.39 -0.02 2.40 16 25 H 0.08 2.80 5.88 -2.39 -0.01 2.79 16 26 H -0.03 -1.42 8.12 -2.39 -0.02 -1.43 16 27 H 0.01 0.78 7.93 -2.39 -0.02 0.76 16 28 H 0.26 14.54 8.31 -92.70 -0.77 13.77 16 29 H 0.08 2.18 8.12 -2.39 -0.02 2.16 16 30 H 0.12 3.30 7.93 -2.39 -0.02 3.28 16 31 H 0.43 7.54 8.15 -92.71 -0.76 6.78 16 32 H 0.20 1.09 8.06 -2.91 -0.02 1.06 16 33 H 0.17 1.38 8.06 -2.91 -0.02 1.36 16 Total: -1.00 -67.19 306.74 2.18 -65.02 By element: Atomic # 1 Polarization: 2.29 SS G_CDS: 0.40 Total: 2.69 kcal Atomic # 6 Polarization: -0.55 SS G_CDS: 6.12 Total: 5.57 kcal Atomic # 7 Polarization: -102.25 SS G_CDS: -5.21 Total: -107.46 kcal Atomic # 8 Polarization: -15.93 SS G_CDS: -0.04 Total: -15.96 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 2.03 Total: 45.71 kcal Atomic # 16 Polarization: 5.57 SS G_CDS: -1.13 Total: 4.44 kcal Total: -67.19 2.18 -65.02 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078646890.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.286 kcal (2) G-P(sol) polarization free energy of solvation -67.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.018 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds