Wall clock time and date at job start Wed Apr 15 2020 11:43:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46502 * 109.46895 * 2 1 4 4 C 1.36931 * 120.00245 * 272.13965 * 3 2 1 5 5 H 1.07996 * 120.00134 * 8.57118 * 4 3 2 6 6 C 1.38814 * 119.99991 * 188.56950 * 4 3 2 7 7 N 1.31623 * 120.00239 * 24.79767 * 6 4 3 8 8 Si 1.86807 * 120.00017 * 204.79788 * 6 4 3 9 9 H 1.48497 * 109.47063 * 90.00072 * 8 6 4 10 10 H 1.48503 * 109.46909 * 210.00097 * 8 6 4 11 11 H 1.48494 * 109.47087 * 329.99699 * 8 6 4 12 12 C 1.46505 * 119.99458 * 92.14216 * 3 2 1 13 13 C 1.50703 * 109.47060 * 89.99989 * 12 3 2 14 14 O 1.21288 * 120.00062 * 0.02562 * 13 12 3 15 15 N 1.34775 * 120.00016 * 179.97438 * 13 12 3 16 16 C 1.38797 * 120.00044 * 179.97438 * 15 13 12 17 17 S 1.70439 * 124.64870 * 359.75338 * 16 15 13 18 18 C 1.75462 * 92.52335 * 179.97438 * 17 16 15 19 19 C 1.32615 * 110.78294 * 359.97438 * 18 17 16 20 20 C 1.36994 * 124.64640 * 179.44852 * 16 15 13 21 21 C 1.43200 * 123.57953 * 359.97438 * 20 16 15 22 22 N 8.01893 * 115.28823 * 55.65979 * 2 1 3 23 23 H 1.08991 * 109.47323 * 299.99784 * 1 2 3 24 24 H 1.09003 * 109.46656 * 60.00012 * 1 2 3 25 25 H 1.09002 * 109.46750 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47333 * 240.00285 * 2 1 3 27 27 H 1.08991 * 109.47053 * 120.00067 * 2 1 3 28 28 H 0.96996 * 120.00280 * 179.97438 * 7 6 4 29 29 H 1.08993 * 109.47566 * 329.99672 * 12 3 2 30 30 H 1.09001 * 109.46839 * 209.99823 * 12 3 2 31 31 H 0.97001 * 119.99633 * 359.72275 * 15 13 12 32 32 H 1.08002 * 124.60955 * 179.97438 * 18 17 16 33 33 H 1.07999 * 123.42807 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2048 2.0416 -1.1850 5 1 1.8638 1.5990 -2.1092 6 6 2.8321 3.2798 -1.1983 7 7 3.6604 3.6084 -0.2296 8 14 2.5008 4.4798 -2.5911 9 1 1.3478 5.3452 -2.2351 10 1 3.7026 5.3232 -2.8142 11 1 2.1888 3.7248 -3.8312 12 6 2.3072 2.0560 1.2680 13 6 3.7449 1.8141 1.6496 14 8 4.4582 1.1444 0.9328 15 7 4.2383 2.3427 2.7869 16 6 5.5622 2.1195 3.1387 17 16 6.6644 1.1935 2.2262 18 6 7.9637 1.4677 3.3731 19 6 7.5502 2.2245 4.3805 20 6 6.1638 2.6183 4.2639 21 6 5.4906 3.4404 5.2238 22 7 4.9555 4.0900 5.9867 23 1 -0.3633 0.5137 0.8899 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8934 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8899 28 1 4.0991 4.4735 -0.2391 29 1 1.6535 1.6623 2.0462 30 1 2.1359 3.1267 1.1569 31 1 3.6691 2.8822 3.3578 32 1 8.9642 1.0737 3.2723 33 1 8.1854 2.5198 5.2025 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000120989083.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:25 Heat of formation + Delta-G solvation = 54.031887 kcal Electronic energy + Delta-G solvation = -19303.254175 eV Core-core repulsion = 16264.046787 eV Total energy + Delta-G solvation = -3039.207389 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 279.078 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.45639 -37.66666 -35.86192 -35.47529 -33.84290 -32.03696 -29.73126 -28.65457 -26.84302 -24.42793 -23.62949 -21.29775 -20.81998 -19.95471 -18.44373 -17.10186 -16.73837 -15.54686 -15.28303 -14.75822 -14.54120 -14.09590 -13.90294 -13.75159 -13.44411 -13.20969 -12.84826 -12.58795 -12.36533 -12.17353 -11.93038 -11.62476 -11.43587 -11.23022 -10.86683 -10.66573 -10.54306 -10.37861 -10.24636 -10.03587 -9.95096 -9.09014 -8.56594 -8.04727 -7.63486 -7.16941 -6.02459 -3.26680 1.21671 1.69350 2.27143 2.40752 3.01617 3.31083 3.39562 3.40627 3.48246 3.65799 3.93010 4.39478 4.47836 5.15684 5.25063 5.32433 5.43968 5.79550 5.85234 6.00188 6.08290 6.19287 6.26228 6.36111 6.44716 6.49402 6.70776 6.79351 6.84069 7.00396 7.62635 7.74773 7.85813 8.09210 8.91117 9.01902 9.63264 10.05477 11.09617 Molecular weight = 279.08amu Principal moments of inertia in cm(-1) A = 0.017993 B = 0.005844 C = 0.005499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1555.747667 B = 4790.150964 C = 5090.768902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.143 3.857 3 N -0.572 5.572 4 C -0.244 4.244 5 H 0.081 0.919 6 C -0.001 4.001 7 N -0.908 5.908 8 Si 0.907 3.093 9 H -0.288 1.288 10 H -0.293 1.293 11 H -0.280 1.280 12 C 0.169 3.831 13 C 0.518 3.482 14 O -0.482 6.482 15 N -0.642 5.642 16 C 0.107 3.893 17 S 0.322 5.678 18 C -0.314 4.314 19 C -0.068 4.068 20 C -0.177 4.177 21 C 0.291 3.709 22 N -0.454 5.454 23 H 0.044 0.956 24 H 0.054 0.946 25 H 0.040 0.960 26 H 0.049 0.951 27 H 0.037 0.963 28 H 0.257 0.743 29 H 0.047 0.953 30 H 0.112 0.888 31 H 0.408 0.592 32 H 0.162 0.838 33 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.183 -5.382 6.006 8.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.017 3.983 3 N -0.290 5.290 4 C -0.372 4.372 5 H 0.099 0.901 6 C -0.198 4.198 7 N -0.554 5.554 8 Si 0.737 3.263 9 H -0.215 1.215 10 H -0.219 1.219 11 H -0.205 1.205 12 C 0.037 3.963 13 C 0.305 3.695 14 O -0.354 6.354 15 N -0.285 5.285 16 C -0.119 4.119 17 S 0.582 5.418 18 C -0.449 4.449 19 C -0.098 4.098 20 C -0.198 4.198 21 C -0.023 4.023 22 N -0.132 5.132 23 H 0.063 0.937 24 H 0.073 0.927 25 H 0.059 0.941 26 H 0.068 0.932 27 H 0.056 0.944 28 H 0.068 0.932 29 H 0.065 0.935 30 H 0.130 0.870 31 H 0.244 0.756 32 H 0.179 0.821 33 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 2.716 -5.555 5.175 8.064 hybrid contribution 0.198 1.834 0.736 1.986 sum 2.914 -3.722 5.911 7.569 Atomic orbital electron populations 1.22300 0.99177 0.99385 1.01617 1.20795 0.92090 0.85904 0.99532 1.44014 1.73317 1.09823 1.01858 1.19306 1.32400 0.99161 0.86371 0.90069 1.24677 0.97267 0.99404 0.98440 1.69749 1.28163 1.22120 1.35372 0.86188 0.77364 0.81223 0.81506 1.21540 1.21949 1.20545 1.20759 0.87142 1.00997 0.87408 1.23385 0.93760 0.75925 0.76434 1.90429 1.58901 1.38566 1.47475 1.44011 1.06932 1.51936 1.25594 1.22340 0.92064 1.00217 0.97255 1.84583 0.94383 1.44764 1.18102 1.25976 1.06107 1.10016 1.02814 1.20454 0.91754 0.98274 0.99342 1.15906 0.94746 1.12474 0.96644 1.24993 0.92935 0.92034 0.92384 1.81207 1.08825 1.12276 1.10905 0.93691 0.92727 0.94075 0.93245 0.94436 0.93241 0.93484 0.87022 0.75602 0.82060 0.84363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.66 10.23 37.16 0.38 -2.28 16 2 C 0.14 2.72 6.39 -4.04 -0.03 2.70 16 3 N -0.57 -12.86 2.02 -174.61 -0.35 -13.22 16 4 C -0.24 -6.14 9.70 -15.06 -0.15 -6.28 16 5 H 0.08 2.04 7.94 -52.49 -0.42 1.62 16 6 C 0.00 -0.03 4.90 -17.43 -0.09 -0.11 16 7 N -0.91 -23.63 8.95 55.49 0.50 -23.14 16 8 Si 0.91 20.78 29.62 -169.99 -5.04 15.74 16 9 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 10 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 11 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 12 C 0.17 3.50 5.42 -5.19 -0.03 3.47 16 13 C 0.52 10.78 5.85 -10.98 -0.06 10.72 16 14 O -0.48 -11.33 13.58 5.55 0.08 -11.26 16 15 N -0.64 -11.46 5.37 -11.61 -0.06 -11.53 16 16 C 0.11 1.82 6.98 -14.85 -0.10 1.72 16 17 S 0.32 5.17 19.96 -107.50 -2.15 3.02 16 18 C -0.31 -3.98 11.10 28.83 0.32 -3.66 16 19 C -0.07 -0.89 10.35 -38.98 -0.40 -1.29 16 20 C -0.18 -2.75 5.88 -105.92 -0.62 -3.37 16 21 C 0.29 4.74 14.98 -22.47 -0.34 4.40 16 22 N -0.45 -7.95 18.54 41.84 0.78 -7.18 16 23 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 24 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 25 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.05 0.97 8.06 -51.93 -0.42 0.55 16 27 H 0.04 0.67 8.05 -51.93 -0.42 0.26 16 28 H 0.26 6.73 8.31 -40.82 -0.34 6.39 16 29 H 0.05 0.82 8.07 -51.93 -0.42 0.40 16 30 H 0.11 2.51 6.30 -51.93 -0.33 2.19 16 31 H 0.41 6.52 8.15 -40.82 -0.33 6.19 16 32 H 0.16 1.58 8.06 -52.49 -0.42 1.16 16 33 H 0.14 1.47 8.06 -52.49 -0.42 1.04 16 LS Contribution 306.58 15.07 4.62 4.62 Total: -1.00 -28.58 306.58 -6.33 -34.91 By element: Atomic # 1 Polarization: 5.60 SS G_CDS: -3.58 Total: 2.02 kcal Atomic # 6 Polarization: 7.13 SS G_CDS: -1.12 Total: 6.01 kcal Atomic # 7 Polarization: -55.91 SS G_CDS: 0.86 Total: -55.06 kcal Atomic # 8 Polarization: -11.33 SS G_CDS: 0.08 Total: -11.26 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.04 Total: 15.74 kcal Atomic # 16 Polarization: 5.17 SS G_CDS: -2.15 Total: 3.02 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -28.58 -6.33 -34.91 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120989083.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.941 kcal (2) G-P(sol) polarization free energy of solvation -28.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.909 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds