Wall clock time and date at job start Wed Apr 15 2020 11:43:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46502 * 109.46895 * 2 1 4 4 C 1.36931 * 120.00245 * 272.13965 * 3 2 1 5 5 H 1.07996 * 120.00134 * 8.57118 * 4 3 2 6 6 C 1.38814 * 119.99991 * 188.56950 * 4 3 2 7 7 N 1.31623 * 120.00239 * 24.79767 * 6 4 3 8 8 Si 1.86807 * 120.00017 * 204.79788 * 6 4 3 9 9 H 1.48497 * 109.47063 * 90.00072 * 8 6 4 10 10 H 1.48503 * 109.46909 * 210.00097 * 8 6 4 11 11 H 1.48494 * 109.47087 * 329.99699 * 8 6 4 12 12 C 1.46505 * 119.99458 * 92.14216 * 3 2 1 13 13 C 1.50703 * 109.47060 * 89.99989 * 12 3 2 14 14 O 1.21288 * 120.00062 * 0.02562 * 13 12 3 15 15 N 1.34775 * 120.00016 * 179.97438 * 13 12 3 16 16 C 1.38797 * 120.00044 * 179.97438 * 15 13 12 17 17 S 1.70439 * 124.64870 * 359.75338 * 16 15 13 18 18 C 1.75462 * 92.52335 * 179.97438 * 17 16 15 19 19 C 1.32615 * 110.78294 * 359.97438 * 18 17 16 20 20 C 1.36994 * 124.64640 * 179.44852 * 16 15 13 21 21 C 1.43200 * 123.57953 * 359.97438 * 20 16 15 22 22 N 8.01893 * 115.28823 * 55.65979 * 2 1 3 23 23 H 1.08991 * 109.47323 * 299.99784 * 1 2 3 24 24 H 1.09003 * 109.46656 * 60.00012 * 1 2 3 25 25 H 1.09002 * 109.46750 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47333 * 240.00285 * 2 1 3 27 27 H 1.08991 * 109.47053 * 120.00067 * 2 1 3 28 28 H 0.96996 * 120.00280 * 179.97438 * 7 6 4 29 29 H 1.08993 * 109.47566 * 329.99672 * 12 3 2 30 30 H 1.09001 * 109.46839 * 209.99823 * 12 3 2 31 31 H 0.97001 * 119.99633 * 359.72275 * 15 13 12 32 32 H 1.08002 * 124.60955 * 179.97438 * 18 17 16 33 33 H 1.07999 * 123.42807 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2048 2.0416 -1.1850 5 1 1.8638 1.5990 -2.1092 6 6 2.8321 3.2798 -1.1983 7 7 3.6604 3.6084 -0.2296 8 14 2.5008 4.4798 -2.5911 9 1 1.3478 5.3452 -2.2351 10 1 3.7026 5.3232 -2.8142 11 1 2.1888 3.7248 -3.8312 12 6 2.3072 2.0560 1.2680 13 6 3.7449 1.8141 1.6496 14 8 4.4582 1.1444 0.9328 15 7 4.2383 2.3427 2.7869 16 6 5.5622 2.1195 3.1387 17 16 6.6644 1.1935 2.2262 18 6 7.9637 1.4677 3.3731 19 6 7.5502 2.2245 4.3805 20 6 6.1638 2.6183 4.2639 21 6 5.4906 3.4404 5.2238 22 7 4.9555 4.0900 5.9867 23 1 -0.3633 0.5137 0.8899 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8934 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8899 28 1 4.0991 4.4735 -0.2391 29 1 1.6535 1.6623 2.0462 30 1 2.1359 3.1267 1.1569 31 1 3.6691 2.8822 3.3578 32 1 8.9642 1.0737 3.2723 33 1 8.1854 2.5198 5.2025 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000120989083.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:25 Heat of formation + Delta-G solvation = 37.634502 kcal Electronic energy + Delta-G solvation = -19303.965219 eV Core-core repulsion = 16264.046787 eV Total energy + Delta-G solvation = -3039.918433 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 279.078 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.94845 -39.00325 -37.46617 -36.82102 -35.26984 -33.79997 -31.26025 -30.02698 -28.44195 -25.89924 -25.13545 -22.76761 -22.11124 -21.42802 -19.82115 -18.68246 -18.33831 -17.15024 -16.77961 -16.11023 -16.07407 -15.57926 -15.41775 -15.12921 -14.89096 -14.70607 -14.15294 -14.12776 -13.63989 -13.60937 -13.37784 -13.17211 -12.83162 -12.79550 -12.55954 -12.29701 -12.09446 -11.82157 -11.78227 -11.63977 -11.55043 -10.71415 -10.32075 -9.28199 -8.94778 -8.90950 -7.93254 -5.17098 -0.07135 0.46266 1.17654 1.24501 1.47986 1.52009 1.57789 1.73352 2.01253 2.23242 2.53253 2.60850 3.19768 3.26790 3.59046 4.15511 4.26179 4.41711 4.46358 4.59847 4.82527 4.89675 4.94098 5.06183 5.17852 5.20134 5.28977 5.38576 5.50377 5.61179 5.67347 6.20119 6.36596 6.54454 7.08896 7.42128 7.83590 8.21452 9.15094 Molecular weight = 279.08amu Principal moments of inertia in cm(-1) A = 0.017993 B = 0.005844 C = 0.005499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1555.747667 B = 4790.150964 C = 5090.768902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.139 3.861 3 N -0.587 5.587 4 C -0.247 4.247 5 H 0.074 0.926 6 C -0.044 4.044 7 N -0.920 5.920 8 Si 0.958 3.042 9 H -0.287 1.287 10 H -0.305 1.305 11 H -0.277 1.277 12 C 0.167 3.833 13 C 0.521 3.479 14 O -0.516 6.516 15 N -0.639 5.639 16 C 0.080 3.920 17 S 0.280 5.720 18 C -0.282 4.282 19 C -0.071 4.071 20 C -0.166 4.166 21 C 0.302 3.698 22 N -0.475 5.475 23 H 0.050 0.950 24 H 0.040 0.960 25 H 0.069 0.931 26 H 0.037 0.963 27 H 0.047 0.953 28 H 0.247 0.753 29 H 0.080 0.920 30 H 0.091 0.909 31 H 0.415 0.585 32 H 0.199 0.801 33 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.866 -5.892 7.124 10.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.014 3.986 3 N -0.306 5.306 4 C -0.377 4.377 5 H 0.092 0.908 6 C -0.239 4.239 7 N -0.567 5.567 8 Si 0.789 3.211 9 H -0.214 1.214 10 H -0.233 1.233 11 H -0.202 1.202 12 C 0.036 3.964 13 C 0.309 3.691 14 O -0.390 6.390 15 N -0.283 5.283 16 C -0.144 4.144 17 S 0.541 5.459 18 C -0.417 4.417 19 C -0.100 4.100 20 C -0.188 4.188 21 C -0.012 4.012 22 N -0.153 5.153 23 H 0.069 0.931 24 H 0.060 0.940 25 H 0.088 0.912 26 H 0.056 0.944 27 H 0.065 0.935 28 H 0.057 0.943 29 H 0.098 0.902 30 H 0.109 0.891 31 H 0.251 0.749 32 H 0.216 0.784 33 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 3.390 -6.080 6.321 9.403 hybrid contribution 0.069 1.938 0.481 1.998 sum 3.458 -4.142 6.802 8.683 Atomic orbital electron populations 1.22139 0.96613 1.01168 1.01219 1.20942 0.93923 0.84297 0.99414 1.44183 1.73757 1.11089 1.01614 1.19446 1.31496 0.99498 0.87280 0.90768 1.25206 0.97764 1.00580 1.00342 1.69912 1.28861 1.21545 1.36411 0.85387 0.76423 0.79473 0.79854 1.21434 1.23255 1.20222 1.20732 0.88010 0.99937 0.87750 1.23110 0.93563 0.75685 0.76778 1.90421 1.59699 1.40077 1.48805 1.43595 1.07719 1.51914 1.25050 1.22468 0.91764 1.01899 0.98306 1.84713 0.96122 1.45155 1.19947 1.26215 1.06198 1.08668 1.00666 1.20784 0.90687 0.98087 1.00472 1.16200 0.95770 1.11266 0.95517 1.25076 0.92398 0.91664 0.92037 1.81221 1.09449 1.12912 1.11752 0.93105 0.94034 0.91178 0.94443 0.93478 0.94338 0.90244 0.89082 0.74850 0.78419 0.81053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.65 10.23 71.98 0.74 -3.91 16 2 C 0.14 5.22 6.39 86.38 0.55 5.77 16 3 N -0.59 -26.47 2.02 -706.34 -1.43 -27.90 16 4 C -0.25 -12.60 9.70 84.03 0.82 -11.79 16 5 H 0.07 3.78 7.94 -2.91 -0.02 3.76 16 6 C -0.04 -2.28 4.90 84.86 0.42 -1.87 16 7 N -0.92 -48.79 8.95 21.65 0.19 -48.60 16 8 Si 0.96 43.37 29.62 68.60 2.03 45.40 16 9 H -0.29 -12.82 7.11 99.48 0.71 -12.11 16 10 H -0.31 -14.31 7.11 99.48 0.71 -13.61 16 11 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 12 C 0.17 6.93 5.42 85.63 0.46 7.39 16 13 C 0.52 21.87 5.85 87.66 0.51 22.38 16 14 O -0.52 -24.64 13.58 -3.05 -0.04 -24.68 16 15 N -0.64 -22.83 5.37 -309.03 -1.66 -24.49 16 16 C 0.08 2.66 6.98 83.30 0.58 3.24 16 17 S 0.28 8.76 19.96 -56.49 -1.13 7.64 16 18 C -0.28 -6.22 11.10 66.66 0.74 -5.48 16 19 C -0.07 -1.61 10.35 22.73 0.24 -1.38 16 20 C -0.17 -4.84 5.88 -20.70 -0.12 -4.96 16 21 C 0.30 9.37 14.98 88.33 1.32 10.70 16 22 N -0.47 -16.04 18.54 19.00 0.35 -15.68 16 23 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 24 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 25 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 26 H 0.04 1.46 8.06 -2.39 -0.02 1.44 16 27 H 0.05 1.65 8.05 -2.39 -0.02 1.63 16 28 H 0.25 13.22 8.31 -92.71 -0.77 12.45 16 29 H 0.08 2.70 8.07 -2.39 -0.02 2.68 16 30 H 0.09 4.17 6.30 -2.39 -0.02 4.15 16 31 H 0.41 13.25 8.15 -92.71 -0.76 12.50 16 32 H 0.20 2.92 8.06 -2.91 -0.02 2.90 16 33 H 0.17 2.82 8.06 -2.91 -0.02 2.80 16 Total: -1.00 -61.62 306.58 4.97 -56.64 By element: Atomic # 1 Polarization: 11.17 SS G_CDS: 0.39 Total: 11.57 kcal Atomic # 6 Polarization: 13.85 SS G_CDS: 6.25 Total: 20.10 kcal Atomic # 7 Polarization: -114.14 SS G_CDS: -2.54 Total: -116.68 kcal Atomic # 8 Polarization: -24.64 SS G_CDS: -0.04 Total: -24.68 kcal Atomic # 14 Polarization: 43.37 SS G_CDS: 2.03 Total: 45.40 kcal Atomic # 16 Polarization: 8.76 SS G_CDS: -1.13 Total: 7.64 kcal Total: -61.62 4.97 -56.64 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120989083.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.279 kcal (2) G-P(sol) polarization free energy of solvation -61.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.645 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds