Wall clock time and date at job start Wed Apr 15 2020 11:43:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46504 * 109.47033 * 2 1 4 4 C 1.37094 * 119.99599 * 263.55424 * 3 2 1 5 5 H 1.08002 * 120.00052 * 188.38690 * 4 3 2 6 6 C 1.38951 * 120.00163 * 8.38987 * 4 3 2 7 7 N 1.31413 * 120.00159 * 25.17268 * 6 4 3 8 8 Si 1.86794 * 120.00034 * 205.17037 * 6 4 3 9 9 H 1.48502 * 109.47156 * 84.98850 * 8 6 4 10 10 H 1.48501 * 109.47350 * 204.99012 * 8 6 4 11 11 H 1.48499 * 109.47308 * 324.98837 * 8 6 4 12 12 C 1.34778 * 120.00231 * 83.55466 * 3 2 1 13 13 O 1.21286 * 120.00056 * 180.02562 * 12 3 2 14 14 C 1.50704 * 119.99769 * 0.02562 * 12 3 2 15 15 C 1.50699 * 109.46593 * 179.97438 * 14 12 3 16 16 C 1.34341 * 125.80187 * 125.00034 * 15 14 12 17 17 N 1.38932 * 107.11796 * 179.73452 * 16 15 14 18 18 C 1.37487 * 139.53386 * 180.20893 * 17 16 15 19 19 C 1.30911 * 116.31959 * 180.02562 * 18 17 16 20 20 S 1.75785 * 109.81893 * 0.02562 * 19 18 17 21 21 C 1.35145 * 106.52799 * 0.24597 * 17 16 15 22 22 N 1.32354 * 108.82722 * 359.97438 * 21 17 16 23 23 H 1.08994 * 109.47016 * 60.00366 * 1 2 3 24 24 H 1.09003 * 109.47285 * 180.02562 * 1 2 3 25 25 H 1.09005 * 109.47014 * 300.00304 * 1 2 3 26 26 H 1.08997 * 109.47285 * 239.99724 * 2 1 3 27 27 H 1.09002 * 109.47084 * 119.99906 * 2 1 3 28 28 H 0.96996 * 120.00396 * 179.97438 * 7 6 4 29 29 H 1.08996 * 109.47099 * 59.99730 * 14 12 3 30 30 H 1.09004 * 109.47336 * 299.99673 * 14 12 3 31 31 H 1.08000 * 126.43976 * 0.02562 * 16 15 14 32 32 H 1.07997 * 121.83972 * 0.05831 * 18 17 16 33 33 H 1.07999 * 125.08766 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.3725 1.9830 -1.1798 5 1 2.8579 2.9477 -1.1696 6 6 2.1068 1.3518 -2.3888 7 7 1.1282 0.4788 -2.4732 8 14 3.1405 1.7444 -3.8943 9 1 4.3647 0.9037 -3.8872 10 1 2.3540 1.4629 -5.1221 11 1 3.5249 3.1786 -3.8707 12 6 2.1195 2.0603 1.1598 13 8 2.5233 3.2040 1.1597 14 6 1.7307 1.3985 2.4568 15 6 1.9364 2.3646 3.5949 16 6 1.0064 2.7314 4.4923 17 7 1.6114 3.6264 5.3658 18 6 1.3018 4.3756 6.4762 19 6 2.2681 5.1075 6.9706 20 16 3.7272 4.8932 6.0139 21 6 2.8897 3.7653 4.9496 22 7 3.0763 3.0051 3.8823 23 1 -0.3633 0.5137 -0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 1.8934 -0.5139 -0.8899 27 1 1.8934 -0.5138 0.8900 28 1 0.9425 0.0384 -3.3172 29 1 2.3498 0.5153 2.6138 30 1 0.6820 1.1043 2.4145 31 1 -0.0177 2.3905 4.5305 32 1 0.3158 4.3607 6.9168 33 1 2.1815 5.7477 7.8360 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000154993087.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:28 Heat of formation + Delta-G solvation = 85.753135 kcal Electronic energy + Delta-G solvation = -19154.082599 eV Core-core repulsion = 16116.250747 eV Total energy + Delta-G solvation = -3037.831852 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 279.078 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -42.40268 -38.47013 -36.49635 -34.86868 -31.94054 -30.91621 -30.49761 -29.29871 -27.19063 -24.52683 -23.92885 -22.13735 -20.75991 -20.62074 -18.46358 -18.24188 -16.71861 -16.18359 -15.82557 -15.53508 -14.86969 -14.45161 -14.37068 -13.96097 -13.67068 -13.27566 -12.69521 -12.61282 -12.37140 -11.90868 -11.67798 -11.41261 -11.27694 -11.06731 -10.93112 -10.66232 -10.34432 -10.26506 -10.05042 -9.81249 -9.68644 -8.79384 -8.61992 -8.15437 -7.63676 -7.56657 -6.25888 -3.65779 0.96104 0.99728 1.66262 2.33499 2.67631 3.20256 3.24206 3.32769 3.38772 4.03829 4.22781 4.49538 4.71912 4.95214 5.08452 5.14312 5.22084 5.40312 5.59498 5.90250 5.97590 6.08603 6.19419 6.29455 6.59763 6.69690 6.74751 6.83681 7.01286 7.34224 7.55711 7.81629 8.08293 8.21821 8.63928 9.31865 9.56989 10.14922 10.75450 Molecular weight = 279.08amu Principal moments of inertia in cm(-1) A = 0.033518 B = 0.004183 C = 0.003830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 835.166819 B = 6691.426624 C = 7309.449235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.120 3.880 3 N -0.448 5.448 4 C -0.300 4.300 5 H 0.102 0.898 6 C 0.028 3.972 7 N -0.870 5.870 8 Si 0.916 3.084 9 H -0.279 1.279 10 H -0.287 1.287 11 H -0.271 1.271 12 C 0.452 3.548 13 O -0.572 6.572 14 C -0.054 4.054 15 C 0.089 3.911 16 C -0.060 4.060 17 N -0.414 5.414 18 C 0.057 3.943 19 C -0.235 4.235 20 S 0.173 5.827 21 C 0.131 3.869 22 N -0.417 5.417 23 H 0.092 0.908 24 H 0.037 0.963 25 H 0.022 0.978 26 H 0.102 0.898 27 H 0.031 0.969 28 H 0.265 0.735 29 H 0.093 0.907 30 H 0.096 0.904 31 H 0.182 0.818 32 H 0.178 0.822 33 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.397 1.948 17.332 17.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.004 4.004 3 N -0.168 5.168 4 C -0.428 4.428 5 H 0.120 0.880 6 C -0.174 4.174 7 N -0.511 5.511 8 Si 0.743 3.257 9 H -0.205 1.205 10 H -0.213 1.213 11 H -0.196 1.196 12 C 0.239 3.761 13 O -0.455 6.455 14 C -0.096 4.096 15 C -0.043 4.043 16 C -0.191 4.191 17 N -0.095 5.095 18 C -0.073 4.073 19 C -0.373 4.373 20 S 0.422 5.578 21 C -0.236 4.236 22 N -0.139 5.139 23 H 0.110 0.890 24 H 0.056 0.944 25 H 0.041 0.959 26 H 0.120 0.880 27 H 0.050 0.950 28 H 0.075 0.925 29 H 0.112 0.888 30 H 0.115 0.885 31 H 0.199 0.801 32 H 0.195 0.805 33 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -0.314 2.840 16.807 17.048 hybrid contribution -1.942 -0.451 -0.400 2.034 sum -2.256 2.388 16.407 16.733 Atomic orbital electron populations 1.22138 0.96869 0.99714 1.01943 1.21439 0.94342 0.83871 1.00746 1.43782 1.56414 1.11218 1.05392 1.19702 1.35554 1.05374 0.82165 0.87985 1.25126 0.96143 0.97377 0.98727 1.70106 1.25241 1.29266 1.26487 0.86095 0.80053 0.79133 0.80387 1.20465 1.21272 1.19612 1.19613 0.85094 0.87020 0.84393 1.90555 1.50397 1.18135 1.86453 1.20066 1.02904 0.96124 0.90481 1.20268 0.88721 0.98942 0.96327 1.22457 1.00550 1.00739 0.95360 1.43851 1.11424 1.32764 1.21418 1.20329 1.01968 0.95696 0.89277 1.24992 0.96551 1.08183 1.07580 1.84634 1.09055 1.43160 1.20984 1.26207 0.87505 1.08247 1.01593 1.70582 1.26697 1.08205 1.08428 0.88979 0.94422 0.95852 0.88047 0.95042 0.92478 0.88844 0.88549 0.80117 0.80535 0.79073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 42. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.04 9.64 37.16 0.36 -2.68 16 2 C 0.12 2.67 5.07 -4.04 -0.02 2.65 16 3 N -0.45 -11.67 2.64 -114.81 -0.30 -11.97 16 4 C -0.30 -8.54 9.43 -14.93 -0.14 -8.68 16 5 H 0.10 3.12 7.31 -52.49 -0.38 2.73 16 6 C 0.03 0.74 4.90 -17.47 -0.09 0.66 16 7 N -0.87 -22.49 8.65 55.50 0.48 -22.01 16 8 Si 0.92 21.02 29.62 -169.99 -5.04 15.99 16 9 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 10 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 11 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 12 C 0.45 11.54 7.57 -10.98 -0.08 11.46 16 13 O -0.57 -16.99 15.15 5.55 0.08 -16.91 16 14 C -0.05 -1.07 4.87 -29.03 -0.14 -1.21 16 15 C 0.09 1.76 5.84 -83.08 -0.49 1.27 16 16 C -0.06 -0.96 11.91 -15.70 -0.19 -1.15 16 17 N -0.41 -6.28 3.19 -63.77 -0.20 -6.49 16 18 C 0.06 0.59 11.26 -16.71 -0.19 0.40 16 19 C -0.24 -2.10 11.11 29.04 0.32 -1.77 16 20 S 0.17 2.18 23.37 -107.50 -2.51 -0.34 16 21 C 0.13 2.33 8.92 -88.71 -0.79 1.54 16 22 N -0.42 -9.07 10.68 -9.77 -0.10 -9.17 16 23 H 0.09 2.19 6.38 -51.93 -0.33 1.86 16 24 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 25 H 0.02 0.43 6.45 -51.93 -0.34 0.09 16 26 H 0.10 2.45 5.83 -51.93 -0.30 2.15 16 27 H 0.03 0.60 6.71 -51.93 -0.35 0.26 16 28 H 0.26 6.52 8.31 -40.82 -0.34 6.18 16 29 H 0.09 1.68 7.42 -51.93 -0.39 1.29 16 30 H 0.10 1.62 6.37 -51.93 -0.33 1.29 16 31 H 0.18 2.15 8.06 -52.49 -0.42 1.73 16 32 H 0.18 1.13 8.06 -52.49 -0.42 0.70 16 33 H 0.19 0.89 8.06 -52.49 -0.42 0.47 16 LS Contribution 292.23 15.07 4.40 4.40 Total: -1.00 -35.06 292.23 -7.88 -42.94 By element: Atomic # 1 Polarization: 4.31 SS G_CDS: -3.24 Total: 1.07 kcal Atomic # 6 Polarization: 3.93 SS G_CDS: -1.44 Total: 2.49 kcal Atomic # 7 Polarization: -49.51 SS G_CDS: -0.13 Total: -49.64 kcal Atomic # 8 Polarization: -16.99 SS G_CDS: 0.08 Total: -16.91 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.04 Total: 15.99 kcal Atomic # 16 Polarization: 2.18 SS G_CDS: -2.51 Total: -0.34 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -35.06 -7.88 -42.94 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000154993087.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.689 kcal (2) G-P(sol) polarization free energy of solvation -35.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.936 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds