Wall clock time and date at job start Wed Apr 15 2020 11:43:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46504 * 109.47033 * 2 1 4 4 C 1.37094 * 119.99599 * 263.55424 * 3 2 1 5 5 H 1.08002 * 120.00052 * 188.38690 * 4 3 2 6 6 C 1.38951 * 120.00163 * 8.38987 * 4 3 2 7 7 N 1.31413 * 120.00159 * 25.17268 * 6 4 3 8 8 Si 1.86794 * 120.00034 * 205.17037 * 6 4 3 9 9 H 1.48502 * 109.47156 * 84.98850 * 8 6 4 10 10 H 1.48501 * 109.47350 * 204.99012 * 8 6 4 11 11 H 1.48499 * 109.47308 * 324.98837 * 8 6 4 12 12 C 1.34778 * 120.00231 * 83.55466 * 3 2 1 13 13 O 1.21286 * 120.00056 * 180.02562 * 12 3 2 14 14 C 1.50704 * 119.99769 * 0.02562 * 12 3 2 15 15 C 1.50699 * 109.46593 * 179.97438 * 14 12 3 16 16 C 1.34341 * 125.80187 * 125.00034 * 15 14 12 17 17 N 1.38932 * 107.11796 * 179.73452 * 16 15 14 18 18 C 1.37487 * 139.53386 * 180.20893 * 17 16 15 19 19 C 1.30911 * 116.31959 * 180.02562 * 18 17 16 20 20 S 1.75785 * 109.81893 * 0.02562 * 19 18 17 21 21 C 1.35145 * 106.52799 * 0.24597 * 17 16 15 22 22 N 1.32354 * 108.82722 * 359.97438 * 21 17 16 23 23 H 1.08994 * 109.47016 * 60.00366 * 1 2 3 24 24 H 1.09003 * 109.47285 * 180.02562 * 1 2 3 25 25 H 1.09005 * 109.47014 * 300.00304 * 1 2 3 26 26 H 1.08997 * 109.47285 * 239.99724 * 2 1 3 27 27 H 1.09002 * 109.47084 * 119.99906 * 2 1 3 28 28 H 0.96996 * 120.00396 * 179.97438 * 7 6 4 29 29 H 1.08996 * 109.47099 * 59.99730 * 14 12 3 30 30 H 1.09004 * 109.47336 * 299.99673 * 14 12 3 31 31 H 1.08000 * 126.43976 * 0.02562 * 16 15 14 32 32 H 1.07997 * 121.83972 * 0.05831 * 18 17 16 33 33 H 1.07999 * 125.08766 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.3725 1.9830 -1.1798 5 1 2.8579 2.9477 -1.1696 6 6 2.1068 1.3518 -2.3888 7 7 1.1282 0.4788 -2.4732 8 14 3.1405 1.7444 -3.8943 9 1 4.3647 0.9037 -3.8872 10 1 2.3540 1.4629 -5.1221 11 1 3.5249 3.1786 -3.8707 12 6 2.1195 2.0603 1.1598 13 8 2.5233 3.2040 1.1597 14 6 1.7307 1.3985 2.4568 15 6 1.9364 2.3646 3.5949 16 6 1.0064 2.7314 4.4923 17 7 1.6114 3.6264 5.3658 18 6 1.3018 4.3756 6.4762 19 6 2.2681 5.1075 6.9706 20 16 3.7272 4.8932 6.0139 21 6 2.8897 3.7653 4.9496 22 7 3.0763 3.0051 3.8823 23 1 -0.3633 0.5137 -0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 1.8934 -0.5139 -0.8899 27 1 1.8934 -0.5138 0.8900 28 1 0.9425 0.0384 -3.3172 29 1 2.3498 0.5153 2.6138 30 1 0.6820 1.1043 2.4145 31 1 -0.0177 2.3905 4.5305 32 1 0.3158 4.3607 6.9168 33 1 2.1815 5.7477 7.8360 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000154993087.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:28 Heat of formation + Delta-G solvation = 62.774496 kcal Electronic energy + Delta-G solvation = -19155.079028 eV Core-core repulsion = 16116.250747 eV Total energy + Delta-G solvation = -3038.828281 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 279.078 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -43.55362 -40.35193 -37.64003 -36.80354 -33.88807 -32.37120 -31.66022 -31.09168 -28.58204 -26.44260 -24.96131 -23.89706 -22.20746 -21.67594 -20.15721 -19.25973 -18.70975 -17.93276 -17.00961 -16.77290 -16.30377 -16.06348 -15.97465 -15.33157 -15.15866 -14.48991 -14.45589 -14.25601 -13.80685 -13.58505 -13.31651 -12.98475 -12.78630 -12.58373 -12.45967 -12.17928 -12.12139 -11.97492 -11.58328 -11.45270 -11.02873 -10.77427 -10.26478 -9.66331 -9.63595 -8.64791 -8.29554 -5.77798 -0.07201 0.04059 0.80249 1.34036 1.37160 1.42493 1.52507 1.68551 1.87061 2.12690 2.32676 3.08291 3.21056 3.47948 3.66991 4.12069 4.21590 4.34046 4.43628 4.45091 4.59702 4.65484 4.72668 4.95899 4.99759 5.14162 5.21726 5.45752 5.50696 5.55705 5.98054 5.99165 6.15347 6.62039 6.85926 7.27481 7.58773 8.18402 8.68829 Molecular weight = 279.08amu Principal moments of inertia in cm(-1) A = 0.033518 B = 0.004183 C = 0.003830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 835.166819 B = 6691.426624 C = 7309.449235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.118 3.882 3 N -0.458 5.458 4 C -0.348 4.348 5 H 0.062 0.938 6 C 0.007 3.993 7 N -0.867 5.867 8 Si 0.975 3.025 9 H -0.271 1.271 10 H -0.269 1.269 11 H -0.284 1.284 12 C 0.436 3.564 13 O -0.628 6.628 14 C -0.037 4.037 15 C 0.040 3.960 16 C -0.041 4.041 17 N -0.413 5.413 18 C 0.034 3.966 19 C -0.202 4.202 20 S 0.167 5.833 21 C 0.097 3.903 22 N -0.485 5.485 23 H 0.056 0.944 24 H 0.068 0.932 25 H 0.040 0.960 26 H 0.080 0.920 27 H 0.065 0.935 28 H 0.273 0.727 29 H 0.105 0.895 30 H 0.127 0.873 31 H 0.224 0.776 32 H 0.224 0.776 33 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.215 1.448 19.398 19.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.004 4.004 3 N -0.177 5.177 4 C -0.476 4.476 5 H 0.080 0.920 6 C -0.196 4.196 7 N -0.505 5.505 8 Si 0.800 3.200 9 H -0.197 1.197 10 H -0.194 1.194 11 H -0.210 1.210 12 C 0.226 3.774 13 O -0.515 6.515 14 C -0.078 4.078 15 C -0.091 4.091 16 C -0.173 4.173 17 N -0.093 5.093 18 C -0.092 4.092 19 C -0.338 4.338 20 S 0.415 5.585 21 C -0.269 4.269 22 N -0.209 5.209 23 H 0.075 0.925 24 H 0.086 0.914 25 H 0.059 0.941 26 H 0.098 0.902 27 H 0.083 0.917 28 H 0.083 0.917 29 H 0.123 0.877 30 H 0.145 0.855 31 H 0.240 0.760 32 H 0.240 0.760 33 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges -2.169 2.301 18.894 19.157 hybrid contribution -1.378 -0.229 -0.975 1.703 sum -3.547 2.072 17.919 18.384 Atomic orbital electron populations 1.21975 0.95229 1.01360 1.01025 1.21557 0.95662 0.81947 1.01276 1.44028 1.56239 1.12483 1.04982 1.19468 1.38372 1.05373 0.84355 0.91967 1.25732 0.96428 0.97041 1.00383 1.70177 1.24464 1.28459 1.27426 0.85245 0.78898 0.78160 0.77734 1.19656 1.19400 1.20981 1.20666 0.83996 0.86697 0.86074 1.90501 1.52686 1.20799 1.87529 1.19932 1.04603 0.96054 0.87203 1.20419 0.89782 1.00872 0.97994 1.22937 1.01228 0.99246 0.93913 1.44164 1.10385 1.32520 1.22192 1.21127 1.04427 0.95499 0.88169 1.25650 0.93560 1.07233 1.07373 1.84633 1.11379 1.41788 1.20712 1.26816 0.89611 1.08859 1.01656 1.70392 1.28835 1.10613 1.11056 0.92540 0.91354 0.94074 0.90214 0.91701 0.91711 0.87661 0.85479 0.75988 0.75951 0.74068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.43 9.64 71.98 0.69 -4.73 16 2 C 0.12 5.22 5.07 86.38 0.44 5.66 16 3 N -0.46 -24.62 2.64 -635.52 -1.68 -26.30 16 4 C -0.35 -20.76 9.43 84.04 0.79 -19.97 16 5 H 0.06 4.12 7.31 -2.91 -0.02 4.09 16 6 C 0.01 0.37 4.90 84.93 0.42 0.79 16 7 N -0.87 -44.69 8.65 21.66 0.19 -44.51 16 8 Si 0.97 43.78 29.62 68.60 2.03 45.82 16 9 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 10 H -0.27 -11.28 7.11 99.48 0.71 -10.58 16 11 H -0.28 -13.31 7.11 99.48 0.71 -12.60 16 12 C 0.44 23.21 7.57 87.66 0.66 23.87 16 13 O -0.63 -39.78 15.15 -3.05 -0.05 -39.83 16 14 C -0.04 -1.46 4.87 29.10 0.14 -1.32 16 15 C 0.04 1.61 5.84 41.36 0.24 1.85 16 16 C -0.04 -1.24 11.91 82.68 0.98 -0.25 16 17 N -0.41 -11.79 3.19 -355.67 -1.13 -12.93 16 18 C 0.03 0.58 11.26 83.86 0.94 1.52 16 19 C -0.20 -2.79 11.11 67.87 0.75 -2.03 16 20 S 0.17 4.06 23.37 -56.49 -1.32 2.74 16 21 C 0.10 3.48 8.92 179.68 1.60 5.08 16 22 N -0.49 -22.02 10.68 -184.83 -1.97 -23.99 16 23 H 0.06 2.65 6.38 -2.39 -0.02 2.63 16 24 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 25 H 0.04 1.44 6.45 -2.38 -0.02 1.43 16 26 H 0.08 3.85 5.83 -2.39 -0.01 3.83 16 27 H 0.06 2.40 6.71 -2.39 -0.02 2.38 16 28 H 0.27 13.14 8.31 -92.71 -0.77 12.37 16 29 H 0.11 3.75 7.42 -2.39 -0.02 3.73 16 30 H 0.13 4.03 6.37 -2.39 -0.02 4.01 16 31 H 0.22 4.46 8.06 -2.91 -0.02 4.44 16 32 H 0.22 1.57 8.06 -2.91 -0.02 1.54 16 33 H 0.24 0.77 8.06 -2.91 -0.02 0.74 16 Total: -1.00 -84.30 292.23 4.89 -79.41 By element: Atomic # 1 Polarization: 7.98 SS G_CDS: 1.15 Total: 9.12 kcal Atomic # 6 Polarization: 2.79 SS G_CDS: 7.67 Total: 10.47 kcal Atomic # 7 Polarization: -103.13 SS G_CDS: -4.60 Total: -107.73 kcal Atomic # 8 Polarization: -39.78 SS G_CDS: -0.05 Total: -39.83 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 2.03 Total: 45.82 kcal Atomic # 16 Polarization: 4.06 SS G_CDS: -1.32 Total: 2.74 kcal Total: -84.30 4.89 -79.41 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000154993087.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.184 kcal (2) G-P(sol) polarization free energy of solvation -84.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.409 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds