Wall clock time and date at job start Wed Apr 15 2020 11:43:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36930 * 120.00020 * 2 1 4 4 H 1.08007 * 120.00180 * 202.34723 * 3 2 1 5 5 C 1.38818 * 120.00040 * 22.34600 * 3 2 1 6 6 N 1.31614 * 120.00072 * 11.34424 * 5 3 2 7 7 Si 1.86798 * 119.99842 * 191.34866 * 5 3 2 8 8 H 1.48499 * 109.47617 * 59.99688 * 7 5 3 9 9 H 1.48499 * 109.47005 * 180.02562 * 7 5 3 10 10 H 1.48506 * 109.47196 * 299.99642 * 7 5 3 11 11 C 1.46498 * 120.00103 * 179.97438 * 2 1 3 12 12 C 1.52996 * 109.47345 * 270.00443 * 11 2 1 13 13 C 1.50700 * 109.47554 * 180.02562 * 12 11 2 14 14 O 1.21288 * 119.99657 * 359.97438 * 13 12 11 15 15 N 1.34772 * 120.00680 * 179.97438 * 13 12 11 16 16 C 1.38795 * 120.00614 * 179.97438 * 15 13 12 17 17 S 1.70447 * 124.64499 * 359.75119 * 16 15 13 18 18 C 1.75467 * 92.52495 * 179.97438 * 17 16 15 19 19 C 1.32623 * 110.77325 * 359.97438 * 18 17 16 20 20 C 1.36990 * 124.65158 * 179.44797 * 16 15 13 21 21 C 1.43202 * 123.57480 * 0.02562 * 20 16 15 22 22 N 8.14301 * 109.47137 * 127.12493 * 2 1 3 23 23 H 1.09004 * 109.46970 * 274.20882 * 1 2 3 24 24 H 1.09002 * 109.46931 * 34.20990 * 1 2 3 25 25 H 1.08999 * 109.47138 * 154.21124 * 1 2 3 26 26 H 0.97000 * 120.00297 * 180.02562 * 6 5 3 27 27 H 1.08998 * 109.47579 * 149.99668 * 11 2 1 28 28 H 1.09000 * 109.46998 * 30.00156 * 11 2 1 29 29 H 1.08995 * 109.47649 * 59.99600 * 12 11 2 30 30 H 1.09008 * 109.46675 * 299.99488 * 12 11 2 31 31 H 0.97006 * 119.99436 * 359.72029 * 15 13 12 32 32 H 1.07994 * 124.61412 * 179.97438 * 18 17 16 33 33 H 1.08000 * 123.41982 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1858 0.0000 4 1 3.1689 1.2210 -0.3556 5 6 1.5338 2.3429 0.4571 6 7 0.3842 2.2691 1.0936 7 14 2.3366 4.0047 0.1686 8 1 2.4916 4.2331 -1.2905 9 1 1.4850 5.0734 0.7499 10 1 3.6720 4.0287 0.8179 11 6 2.1975 -1.2687 0.0006 12 6 2.4525 -1.7098 1.4432 13 6 3.2065 -3.0146 1.4438 14 8 3.5098 -3.5402 0.3937 15 7 3.5440 -3.5974 2.6112 16 6 4.2380 -4.7994 2.6118 17 16 4.7168 -5.6425 1.2099 18 6 5.4644 -6.9264 2.1435 19 6 5.3400 -6.6964 3.4437 20 6 4.6373 -5.4677 3.7390 21 6 4.3829 -5.0006 5.0685 22 7 4.1794 -4.6337 6.1213 23 1 -0.3633 0.0754 1.0249 24 1 -0.3633 0.8499 -0.5778 25 1 -0.3633 -0.9253 -0.4471 26 1 -0.0464 3.0776 1.4126 27 1 3.1499 -1.1387 -0.5133 28 1 1.6085 -2.0286 -0.5130 29 1 1.5001 -1.8399 1.9571 30 1 3.0416 -0.9499 1.9567 31 1 3.3050 -3.1750 3.4511 32 1 5.9586 -7.7869 1.7173 33 1 5.7274 -7.3577 4.2045 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000170778492.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:32 Heat of formation + Delta-G solvation = 47.683515 kcal Electronic energy + Delta-G solvation = -18378.872011 eV Core-core repulsion = 15339.389336 eV Total energy + Delta-G solvation = -3039.482675 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 279.078 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.43042 -38.28815 -36.08558 -35.77601 -34.77538 -32.12947 -30.15012 -28.80292 -25.98360 -25.35157 -23.95321 -21.78839 -21.08716 -20.17242 -18.94181 -17.77758 -16.81034 -16.12435 -15.81370 -15.39457 -14.80810 -14.56145 -14.34437 -14.19132 -13.60002 -13.35210 -13.18489 -12.81763 -12.70184 -12.51990 -12.18341 -12.08537 -11.33317 -11.18786 -11.07284 -10.94354 -10.86900 -10.61031 -10.23972 -10.03209 -9.91817 -9.80732 -8.62487 -8.59074 -8.29682 -6.88457 -5.80960 -3.27868 0.57008 1.09702 1.81607 1.83487 2.49520 2.60516 2.74288 3.34714 3.38941 3.40550 3.41516 3.98711 4.42730 4.78116 4.79279 5.00860 5.32556 5.49229 5.59556 5.63789 5.71697 5.83573 5.97415 6.03495 6.21227 6.55003 6.69462 6.80842 6.89599 7.32575 7.42666 7.64662 7.74349 7.78469 8.31729 9.15585 9.78014 10.26284 11.23756 Molecular weight = 279.08amu Principal moments of inertia in cm(-1) A = 0.025832 B = 0.003720 C = 0.003505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1083.687166 B = 7524.884456 C = 7987.716980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.160 3.840 2 N -0.600 5.600 3 C -0.261 4.261 4 H 0.070 0.930 5 C 0.004 3.996 6 N -0.908 5.908 7 Si 0.906 3.094 8 H -0.283 1.283 9 H -0.290 1.290 10 H -0.283 1.283 11 C 0.168 3.832 12 C -0.157 4.157 13 C 0.512 3.488 14 O -0.501 6.501 15 N -0.640 5.640 16 C 0.074 3.926 17 S 0.320 5.680 18 C -0.293 4.293 19 C -0.070 4.070 20 C -0.142 4.142 21 C 0.279 3.721 22 N -0.431 5.431 23 H 0.028 0.972 24 H 0.047 0.953 25 H -0.001 1.001 26 H 0.254 0.746 27 H 0.054 0.946 28 H 0.048 0.952 29 H 0.094 0.906 30 H 0.103 0.897 31 H 0.420 0.580 32 H 0.169 0.831 33 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.717 -17.321 1.449 19.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.321 5.321 3 C -0.391 4.391 4 H 0.088 0.912 5 C -0.194 4.194 6 N -0.552 5.552 7 Si 0.736 3.264 8 H -0.209 1.209 9 H -0.216 1.216 10 H -0.209 1.209 11 C 0.039 3.961 12 C -0.200 4.200 13 C 0.302 3.698 14 O -0.376 6.376 15 N -0.283 5.283 16 C -0.149 4.149 17 S 0.581 5.419 18 C -0.429 4.429 19 C -0.100 4.100 20 C -0.163 4.163 21 C -0.037 4.037 22 N -0.108 5.108 23 H 0.047 0.953 24 H 0.066 0.934 25 H 0.017 0.983 26 H 0.064 0.936 27 H 0.073 0.927 28 H 0.066 0.934 29 H 0.113 0.887 30 H 0.121 0.879 31 H 0.258 0.742 32 H 0.187 0.813 33 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 7.257 -16.602 0.792 18.136 hybrid contribution 0.505 0.767 1.945 2.151 sum 7.762 -15.834 2.737 17.846 Atomic orbital electron populations 1.20855 0.82308 0.95910 0.99340 1.44050 1.02089 1.00660 1.85297 1.19218 0.98167 0.85389 1.36306 0.91231 1.25047 0.97595 0.98633 0.98159 1.70047 1.17765 1.27395 1.40015 0.86315 0.78513 0.83544 0.78033 1.20923 1.21585 1.20889 1.20648 0.96925 0.88206 0.90285 1.22786 1.00069 0.90469 1.06648 1.22210 0.78254 0.87554 0.81793 1.90581 1.52818 1.63736 1.30439 1.43562 1.53641 1.19216 1.11914 1.22290 0.99180 0.92577 1.00842 1.84473 1.48370 1.09301 0.99751 1.25968 1.11340 1.07187 0.98371 1.20581 0.98678 0.94373 0.96386 1.15997 1.15263 1.00172 0.84889 1.24844 0.93168 0.93547 0.92133 1.81174 1.10157 1.08401 1.11065 0.95324 0.93445 0.98276 0.93575 0.92736 0.93373 0.88748 0.87922 0.74225 0.81306 0.83560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.80 9.01 59.85 0.54 4.34 16 2 N -0.60 -14.44 2.93 -181.12 -0.53 -14.97 16 3 C -0.26 -6.91 9.67 -15.06 -0.15 -7.05 16 4 H 0.07 1.80 7.85 -52.48 -0.41 1.39 16 5 C 0.00 0.11 5.13 -17.43 -0.09 0.03 16 6 N -0.91 -25.51 10.58 55.49 0.59 -24.93 16 7 Si 0.91 21.27 29.57 -169.99 -5.03 16.24 16 8 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 9 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 10 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 11 C 0.17 3.29 5.00 -4.05 -0.02 3.27 16 12 C -0.16 -2.55 6.02 -27.89 -0.17 -2.71 16 13 C 0.51 7.35 7.79 -10.99 -0.09 7.26 16 14 O -0.50 -7.93 13.41 5.55 0.07 -7.86 16 15 N -0.64 -7.80 5.37 -11.61 -0.06 -7.87 16 16 C 0.07 0.86 6.98 -14.85 -0.10 0.75 16 17 S 0.32 3.30 19.96 -107.50 -2.15 1.15 16 18 C -0.29 -2.30 11.10 28.83 0.32 -1.98 16 19 C -0.07 -0.60 10.35 -38.98 -0.40 -1.01 16 20 C -0.14 -1.55 5.88 -105.92 -0.62 -2.17 16 21 C 0.28 3.48 14.97 -22.56 -0.34 3.15 16 22 N -0.43 -6.23 18.52 41.73 0.77 -5.46 16 23 H 0.03 0.72 7.42 -51.93 -0.39 0.33 16 24 H 0.05 1.22 7.19 -51.93 -0.37 0.84 16 25 H 0.00 -0.03 7.84 -51.93 -0.41 -0.43 16 26 H 0.25 6.98 8.31 -40.82 -0.34 6.64 16 27 H 0.05 1.08 7.99 -51.93 -0.41 0.67 16 28 H 0.05 0.90 7.82 -51.93 -0.41 0.49 16 29 H 0.09 1.50 8.14 -51.93 -0.42 1.08 16 30 H 0.10 1.75 8.14 -51.92 -0.42 1.33 16 31 H 0.42 4.59 8.15 -40.82 -0.33 4.26 16 32 H 0.17 0.87 8.06 -52.49 -0.42 0.45 16 33 H 0.15 0.95 8.06 -52.49 -0.42 0.53 16 LS Contribution 308.52 15.07 4.65 4.65 Total: -1.00 -30.05 308.52 -6.35 -36.41 By element: Atomic # 1 Polarization: 2.32 SS G_CDS: -3.56 Total: -1.24 kcal Atomic # 6 Polarization: 4.98 SS G_CDS: -1.12 Total: 3.86 kcal Atomic # 7 Polarization: -53.98 SS G_CDS: 0.77 Total: -53.21 kcal Atomic # 8 Polarization: -7.93 SS G_CDS: 0.07 Total: -7.86 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.03 Total: 16.24 kcal Atomic # 16 Polarization: 3.30 SS G_CDS: -2.15 Total: 1.15 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -30.05 -6.35 -36.41 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000170778492.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.089 kcal (2) G-P(sol) polarization free energy of solvation -30.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.406 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds