Wall clock time and date at job start Wed Apr 15 2020 11:43:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36930 * 120.00020 * 2 1 4 4 H 1.08007 * 120.00180 * 202.34723 * 3 2 1 5 5 C 1.38818 * 120.00040 * 22.34600 * 3 2 1 6 6 N 1.31614 * 120.00072 * 11.34424 * 5 3 2 7 7 Si 1.86798 * 119.99842 * 191.34866 * 5 3 2 8 8 H 1.48499 * 109.47617 * 59.99688 * 7 5 3 9 9 H 1.48499 * 109.47005 * 180.02562 * 7 5 3 10 10 H 1.48506 * 109.47196 * 299.99642 * 7 5 3 11 11 C 1.46498 * 120.00103 * 179.97438 * 2 1 3 12 12 C 1.52996 * 109.47345 * 270.00443 * 11 2 1 13 13 C 1.50700 * 109.47554 * 180.02562 * 12 11 2 14 14 O 1.21288 * 119.99657 * 359.97438 * 13 12 11 15 15 N 1.34772 * 120.00680 * 179.97438 * 13 12 11 16 16 C 1.38795 * 120.00614 * 179.97438 * 15 13 12 17 17 S 1.70447 * 124.64499 * 359.75119 * 16 15 13 18 18 C 1.75467 * 92.52495 * 179.97438 * 17 16 15 19 19 C 1.32623 * 110.77325 * 359.97438 * 18 17 16 20 20 C 1.36990 * 124.65158 * 179.44797 * 16 15 13 21 21 C 1.43202 * 123.57480 * 0.02562 * 20 16 15 22 22 N 8.14301 * 109.47137 * 127.12493 * 2 1 3 23 23 H 1.09004 * 109.46970 * 274.20882 * 1 2 3 24 24 H 1.09002 * 109.46931 * 34.20990 * 1 2 3 25 25 H 1.08999 * 109.47138 * 154.21124 * 1 2 3 26 26 H 0.97000 * 120.00297 * 180.02562 * 6 5 3 27 27 H 1.08998 * 109.47579 * 149.99668 * 11 2 1 28 28 H 1.09000 * 109.46998 * 30.00156 * 11 2 1 29 29 H 1.08995 * 109.47649 * 59.99600 * 12 11 2 30 30 H 1.09008 * 109.46675 * 299.99488 * 12 11 2 31 31 H 0.97006 * 119.99436 * 359.72029 * 15 13 12 32 32 H 1.07994 * 124.61412 * 179.97438 * 18 17 16 33 33 H 1.08000 * 123.41982 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1858 0.0000 4 1 3.1689 1.2210 -0.3556 5 6 1.5338 2.3429 0.4571 6 7 0.3842 2.2691 1.0936 7 14 2.3366 4.0047 0.1686 8 1 2.4916 4.2331 -1.2905 9 1 1.4850 5.0734 0.7499 10 1 3.6720 4.0287 0.8179 11 6 2.1975 -1.2687 0.0006 12 6 2.4525 -1.7098 1.4432 13 6 3.2065 -3.0146 1.4438 14 8 3.5098 -3.5402 0.3937 15 7 3.5440 -3.5974 2.6112 16 6 4.2380 -4.7994 2.6118 17 16 4.7168 -5.6425 1.2099 18 6 5.4644 -6.9264 2.1435 19 6 5.3400 -6.6964 3.4437 20 6 4.6373 -5.4677 3.7390 21 6 4.3829 -5.0006 5.0685 22 7 4.1794 -4.6337 6.1213 23 1 -0.3633 0.0754 1.0249 24 1 -0.3633 0.8499 -0.5778 25 1 -0.3633 -0.9253 -0.4471 26 1 -0.0464 3.0776 1.4126 27 1 3.1499 -1.1387 -0.5133 28 1 1.6085 -2.0286 -0.5130 29 1 1.5001 -1.8399 1.9571 30 1 3.0416 -0.9499 1.9567 31 1 3.3050 -3.1750 3.4511 32 1 5.9586 -7.7869 1.7173 33 1 5.7274 -7.3577 4.2045 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000170778492.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:31 Heat of formation + Delta-G solvation = 29.467165 kcal Electronic energy + Delta-G solvation = -18379.661931 eV Core-core repulsion = 15339.389336 eV Total energy + Delta-G solvation = -3040.272595 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 279.078 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.53062 -39.22051 -37.60755 -37.05370 -35.74907 -33.90389 -31.68934 -29.83982 -27.93024 -26.59647 -25.26536 -23.04073 -22.20614 -21.45498 -19.89867 -18.98292 -18.60611 -17.16694 -17.00346 -16.65067 -16.34673 -15.62430 -15.56215 -15.21942 -15.09936 -14.80357 -14.32201 -14.20424 -14.04984 -13.71822 -13.46675 -13.09069 -12.93372 -12.75115 -12.67737 -12.44993 -12.12451 -12.05571 -11.97454 -11.91211 -11.63608 -10.88245 -10.63800 -9.38716 -9.16258 -8.84022 -7.83833 -5.32579 -0.32585 0.28462 1.06691 1.08917 1.37138 1.48298 1.49964 1.56386 1.64374 1.73327 2.45136 2.51397 3.06315 3.31133 3.49059 3.95590 3.98916 4.21847 4.28058 4.34644 4.73781 4.79448 4.87917 4.93928 5.03043 5.21944 5.25593 5.31679 5.36905 5.63794 5.73227 5.86995 6.31905 6.44961 6.68155 7.14771 7.85477 8.28667 9.19158 Molecular weight = 279.08amu Principal moments of inertia in cm(-1) A = 0.025832 B = 0.003720 C = 0.003505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1083.687166 B = 7524.884456 C = 7987.716980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.174 3.826 2 N -0.617 5.617 3 C -0.268 4.268 4 H 0.071 0.929 5 C -0.047 4.047 6 N -0.936 5.936 7 Si 0.966 3.034 8 H -0.280 1.280 9 H -0.295 1.295 10 H -0.275 1.275 11 C 0.168 3.832 12 C -0.144 4.144 13 C 0.523 3.477 14 O -0.517 6.517 15 N -0.633 5.633 16 C 0.050 3.950 17 S 0.306 5.694 18 C -0.265 4.265 19 C -0.076 4.076 20 C -0.138 4.138 21 C 0.295 3.705 22 N -0.469 5.469 23 H 0.009 0.991 24 H 0.018 0.982 25 H 0.030 0.970 26 H 0.248 0.752 27 H 0.049 0.951 28 H 0.059 0.941 29 H 0.098 0.902 30 H 0.094 0.906 31 H 0.425 0.575 32 H 0.204 0.796 33 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.225 -19.244 1.303 21.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.339 5.339 3 C -0.398 4.398 4 H 0.089 0.911 5 C -0.243 4.243 6 N -0.582 5.582 7 Si 0.794 3.206 8 H -0.206 1.206 9 H -0.221 1.221 10 H -0.201 1.201 11 C 0.041 3.959 12 C -0.186 4.186 13 C 0.312 3.688 14 O -0.393 6.393 15 N -0.277 5.277 16 C -0.171 4.171 17 S 0.567 5.433 18 C -0.401 4.401 19 C -0.105 4.105 20 C -0.160 4.160 21 C -0.019 4.019 22 N -0.147 5.147 23 H 0.027 0.973 24 H 0.037 0.963 25 H 0.049 0.951 26 H 0.058 0.942 27 H 0.068 0.932 28 H 0.077 0.923 29 H 0.116 0.884 30 H 0.112 0.888 31 H 0.263 0.737 32 H 0.221 0.779 33 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges 8.801 -18.575 0.653 20.565 hybrid contribution 0.110 1.184 1.959 2.292 sum 8.911 -17.391 2.613 19.715 Atomic orbital electron populations 1.20616 0.82470 0.96172 0.97873 1.44223 1.02321 1.01582 1.85819 1.19515 0.98273 0.86577 1.35392 0.91075 1.25734 0.98309 1.01639 0.98568 1.70202 1.19051 1.27593 1.41363 0.85370 0.77725 0.79665 0.77842 1.20563 1.22141 1.20109 1.20652 0.96319 0.86695 0.92199 1.22339 1.00662 0.91625 1.04023 1.21499 0.78210 0.86883 0.82213 1.90592 1.53539 1.64114 1.31072 1.43193 1.53574 1.19632 1.11298 1.22436 1.00409 0.92599 1.01694 1.84550 1.48439 1.10216 1.00063 1.26252 1.09595 1.06700 0.97518 1.20846 0.98544 0.93735 0.97394 1.16259 1.15081 1.00910 0.83751 1.25065 0.92150 0.92556 0.92162 1.81191 1.11481 1.09642 1.12343 0.97312 0.96288 0.95143 0.94233 0.93240 0.92272 0.88362 0.88812 0.73687 0.77942 0.81009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.17 8.29 9.01 127.77 1.15 9.44 16 2 N -0.62 -29.75 2.93 -726.93 -2.13 -31.87 16 3 C -0.27 -14.20 9.67 84.04 0.81 -13.39 16 4 H 0.07 3.67 7.85 -2.91 -0.02 3.65 16 5 C -0.05 -2.56 5.13 84.86 0.44 -2.12 16 6 N -0.94 -53.60 10.58 21.65 0.23 -53.37 16 7 Si 0.97 43.99 29.57 68.60 2.03 46.02 16 8 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 9 H -0.30 -13.59 7.11 99.48 0.71 -12.88 16 10 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 11 C 0.17 6.49 5.00 86.38 0.43 6.92 16 12 C -0.14 -4.61 6.02 29.85 0.18 -4.43 16 13 C 0.52 14.53 7.79 87.66 0.68 15.21 16 14 O -0.52 -15.81 13.41 -3.05 -0.04 -15.85 16 15 N -0.63 -14.81 5.37 -309.04 -1.66 -16.47 16 16 C 0.05 1.08 6.98 83.30 0.58 1.66 16 17 S 0.31 5.62 19.96 -56.49 -1.13 4.49 16 18 C -0.27 -3.13 11.10 66.66 0.74 -2.39 16 19 C -0.08 -1.04 10.35 22.73 0.24 -0.81 16 20 C -0.14 -2.71 5.88 -20.71 -0.12 -2.83 16 21 C 0.30 6.99 14.97 88.36 1.32 8.31 16 22 N -0.47 -13.22 18.52 18.97 0.35 -12.87 16 23 H 0.01 0.44 7.42 -2.39 -0.02 0.42 16 24 H 0.02 0.97 7.19 -2.39 -0.02 0.96 16 25 H 0.03 1.23 7.84 -2.39 -0.02 1.21 16 26 H 0.25 13.95 8.31 -92.71 -0.77 13.18 16 27 H 0.05 1.95 7.99 -2.39 -0.02 1.93 16 28 H 0.06 2.14 7.82 -2.39 -0.02 2.12 16 29 H 0.10 3.08 8.14 -2.39 -0.02 3.06 16 30 H 0.09 3.19 8.14 -2.38 -0.02 3.17 16 31 H 0.42 9.00 8.15 -92.70 -0.76 8.24 16 32 H 0.20 1.04 8.06 -2.91 -0.02 1.02 16 33 H 0.17 1.50 8.06 -2.91 -0.02 1.48 16 Total: -1.00 -64.44 308.52 4.50 -59.94 By element: Atomic # 1 Polarization: 4.01 SS G_CDS: 0.39 Total: 4.41 kcal Atomic # 6 Polarization: 9.12 SS G_CDS: 6.45 Total: 15.57 kcal Atomic # 7 Polarization: -111.37 SS G_CDS: -3.20 Total: -114.58 kcal Atomic # 8 Polarization: -15.81 SS G_CDS: -0.04 Total: -15.85 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 2.03 Total: 46.02 kcal Atomic # 16 Polarization: 5.62 SS G_CDS: -1.13 Total: 4.49 kcal Total: -64.44 4.50 -59.94 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000170778492.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.409 kcal (2) G-P(sol) polarization free energy of solvation -64.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.942 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds