Wall clock time and date at job start Wed Apr 15 2020 11:43:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46900 * 111.00370 * 2 1 4 4 C 1.50703 * 109.46985 * 66.04099 * 3 2 1 5 5 H 1.07994 * 120.00380 * 0.02562 * 4 3 2 6 6 C 1.37883 * 119.99694 * 180.02562 * 4 3 2 7 7 N 1.31516 * 119.99684 * 0.02562 * 6 4 3 8 8 Si 1.86792 * 120.00082 * 180.02562 * 6 4 3 9 9 H 1.48501 * 109.47197 * 89.99892 * 8 6 4 10 10 H 1.48498 * 109.47269 * 210.00168 * 8 6 4 11 11 H 1.48508 * 109.47169 * 330.00126 * 8 6 4 12 12 C 1.46896 * 111.00444 * 236.03788 * 2 1 3 13 13 C 1.50706 * 109.47403 * 293.96232 * 12 2 1 14 14 N 1.30038 * 126.16758 * 269.99684 * 13 12 2 15 15 O 1.21281 * 110.53023 * 179.74381 * 14 13 12 16 16 C 1.34269 * 109.68803 * 0.40208 * 15 14 13 17 17 C 1.47421 * 126.69756 * 179.86573 * 16 15 14 18 18 C 1.44335 * 123.32894 * 359.68972 * 17 16 15 19 19 C 1.32924 * 112.98974 * 179.97438 * 18 17 16 20 20 S 1.75552 * 110.34223 * 359.97438 * 19 18 17 21 21 C 1.34824 * 123.32524 * 179.66345 * 17 16 15 22 22 N 1.32327 * 106.60140 * 359.60415 * 16 15 14 23 23 H 1.08997 * 109.47213 * 183.95741 * 1 2 3 24 24 H 1.09000 * 109.47122 * 303.96316 * 1 2 3 25 25 H 1.08999 * 109.46955 * 63.95352 * 1 2 3 26 26 H 1.09003 * 109.47249 * 186.04334 * 3 2 1 27 27 H 1.08995 * 109.46638 * 306.04500 * 3 2 1 28 28 H 0.97004 * 119.99679 * 179.97438 * 7 6 4 29 29 H 1.08994 * 109.47430 * 173.95458 * 12 2 1 30 30 H 1.09002 * 109.46435 * 53.95697 * 12 2 1 31 31 H 1.08007 * 123.50856 * 359.94169 * 18 17 16 32 32 H 1.08000 * 124.83191 * 179.73519 * 19 18 17 33 33 H 1.08000 * 124.52387 * 0.02562 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6369 2.0471 1.2984 5 1 1.0745 1.5114 2.0487 6 6 2.0268 3.3495 1.5284 7 7 2.7112 4.0021 0.6144 8 14 1.5830 4.1870 3.1380 9 1 2.6604 3.9508 4.1324 10 1 1.4301 5.6465 2.9110 11 1 0.3056 3.6292 3.6505 12 6 1.9955 -0.7661 -1.1374 13 6 1.6369 -2.2206 -0.9726 14 7 2.3498 -3.1227 -0.3654 15 8 1.7907 -4.1985 -0.3963 16 6 0.6278 -4.0850 -1.0579 17 6 -0.3464 -5.1605 -1.3180 18 6 -0.1587 -6.5232 -0.8810 19 6 -1.1639 -7.3219 -1.2253 20 16 -2.3863 -6.4199 -2.1051 21 6 -1.5009 -4.9682 -1.9871 22 7 0.5243 -2.8182 -1.4259 23 1 -0.3633 -1.0252 0.0709 24 1 -0.3633 0.5741 0.8523 25 1 -0.3633 0.4512 -0.9233 26 1 3.0798 1.3443 -0.1082 27 1 1.5612 1.9272 -0.8309 28 1 2.9852 4.9185 0.7761 29 1 3.0797 -0.6612 -1.1754 30 1 1.5612 -0.3874 -2.0626 31 1 0.7085 -6.8592 -0.3317 32 1 -1.2189 -8.3767 -0.9996 33 1 -1.8222 -4.0207 -2.3938 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000175583126.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:34 Heat of formation + Delta-G solvation = 111.707720 kcal Electronic energy + Delta-G solvation = -18478.958959 eV Core-core repulsion = 15442.252582 eV Total energy + Delta-G solvation = -3036.706377 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 279.078 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -45.30835 -38.12564 -37.09805 -35.17681 -32.77309 -32.17325 -29.89132 -28.14697 -26.98685 -25.51050 -24.42257 -22.86501 -22.11545 -20.57686 -19.47349 -18.26345 -17.92233 -16.95802 -16.35069 -16.16763 -14.96892 -14.43907 -14.16163 -14.02551 -13.77502 -13.62303 -13.19528 -13.03736 -12.45400 -12.18183 -11.94551 -11.62486 -11.57512 -11.34895 -11.15489 -10.94159 -10.81965 -10.72124 -10.48398 -10.25433 -9.89896 -9.34609 -9.27888 -8.54844 -8.45398 -7.38430 -6.04838 -4.06149 0.33688 1.14413 1.23624 1.49871 2.15328 2.74264 2.94787 3.32362 3.37955 3.41879 3.67578 4.23927 4.43029 4.51355 4.89751 5.03272 5.10556 5.18429 5.31673 5.52795 5.67025 5.71047 5.80977 5.91157 6.05815 6.14467 6.18875 6.33958 6.74276 7.18445 7.26015 7.73688 7.98846 8.10763 8.37469 8.45995 9.00531 9.57839 11.06182 Molecular weight = 279.08amu Principal moments of inertia in cm(-1) A = 0.035783 B = 0.003176 C = 0.003089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 782.307499 B = 8815.333021 C = 9063.125995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 N -0.535 5.535 3 C 0.194 3.806 4 C -0.508 4.508 5 H 0.064 0.936 6 C 0.056 3.944 7 N -0.898 5.898 8 Si 0.900 3.100 9 H -0.280 1.280 10 H -0.287 1.287 11 H -0.274 1.274 12 C 0.139 3.861 13 C 0.199 3.801 14 N -0.370 5.370 15 O 0.083 5.917 16 C 0.227 3.773 17 C -0.049 4.049 18 C -0.104 4.104 19 C -0.230 4.230 20 S 0.194 5.806 21 C -0.186 4.186 22 N -0.468 5.468 23 H 0.044 0.956 24 H 0.076 0.924 25 H 0.017 0.983 26 H 0.033 0.967 27 H -0.004 1.004 28 H 0.262 0.738 29 H 0.097 0.903 30 H 0.058 0.942 31 H 0.157 0.843 32 H 0.173 0.827 33 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.245 -22.964 -6.977 25.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 N -0.261 5.261 3 C 0.070 3.930 4 C -0.546 4.546 5 H 0.082 0.918 6 C -0.146 4.146 7 N -0.538 5.538 8 Si 0.728 3.272 9 H -0.206 1.206 10 H -0.213 1.213 11 H -0.198 1.198 12 C 0.009 3.991 13 C -0.075 4.075 14 N -0.076 5.076 15 O 0.022 5.978 16 C 0.007 3.993 17 C -0.065 4.065 18 C -0.134 4.134 19 C -0.365 4.365 20 S 0.459 5.541 21 C -0.326 4.326 22 N -0.202 5.202 23 H 0.063 0.937 24 H 0.095 0.905 25 H 0.035 0.965 26 H 0.051 0.949 27 H 0.014 0.986 28 H 0.072 0.928 29 H 0.115 0.885 30 H 0.076 0.924 31 H 0.174 0.826 32 H 0.191 0.809 33 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -9.757 -22.818 -7.040 25.796 hybrid contribution 0.934 1.298 0.790 1.784 sum -8.823 -21.520 -6.251 24.084 Atomic orbital electron populations 1.22234 0.88130 0.99781 1.00817 1.62120 1.07715 1.18189 1.38115 1.19780 0.95572 0.80507 0.97154 1.21116 1.35059 0.96920 1.01544 0.91816 1.24982 0.95235 0.97259 0.97087 1.69957 1.38305 1.11503 1.34010 0.86461 0.78893 0.78371 0.83478 1.20571 1.21264 1.19846 1.20362 1.01373 0.82395 0.94941 1.25850 0.87084 0.99770 0.94771 1.74632 1.20401 0.91974 1.20584 1.85412 1.27783 1.28587 1.56009 1.25652 0.88156 0.92224 0.93251 1.17207 0.93149 0.90288 1.05891 1.21238 1.00534 0.90298 1.01298 1.25535 0.98933 1.04479 1.07543 1.83192 1.21528 0.96697 1.52689 1.25272 0.98206 1.05430 1.03724 1.72178 1.21943 1.02690 1.23412 0.93709 0.90515 0.96474 0.94875 0.98573 0.92847 0.88476 0.92386 0.82556 0.80929 0.80300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.82 9.18 60.06 0.55 1.37 16 2 N -0.54 -12.30 4.74 -245.83 -1.17 -13.46 16 3 C 0.19 5.15 4.72 -4.97 -0.02 5.12 16 4 C -0.51 -14.51 8.46 -34.44 -0.29 -14.80 16 5 H 0.06 1.82 7.12 -52.49 -0.37 1.44 16 6 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 7 N -0.90 -26.81 13.29 55.43 0.74 -26.07 16 8 Si 0.90 21.91 29.54 -169.99 -5.02 16.89 16 9 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 10 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 11 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 12 C 0.14 2.74 5.59 -4.98 -0.03 2.71 16 13 C 0.20 3.71 6.80 -156.57 -1.07 2.64 16 14 N -0.37 -6.84 12.14 31.23 0.38 -6.46 16 15 O 0.08 1.31 11.33 16.47 0.19 1.49 16 16 C 0.23 3.31 8.14 -13.92 -0.11 3.20 16 17 C -0.05 -0.54 5.94 -104.97 -0.62 -1.16 16 18 C -0.10 -0.86 10.37 -39.02 -0.40 -1.26 16 19 C -0.23 -1.44 11.14 28.90 0.32 -1.12 16 20 S 0.19 1.24 23.03 -107.50 -2.48 -1.24 16 21 C -0.19 -1.74 10.67 29.52 0.31 -1.43 16 22 N -0.47 -7.91 10.79 -10.18 -0.11 -8.02 16 23 H 0.04 0.89 6.74 -51.93 -0.35 0.54 16 24 H 0.08 1.70 6.76 -51.93 -0.35 1.35 16 25 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 26 H 0.03 0.92 7.93 -51.93 -0.41 0.51 16 27 H 0.00 -0.10 8.12 -51.93 -0.42 -0.52 16 28 H 0.26 7.37 8.31 -40.82 -0.34 7.04 16 29 H 0.10 1.85 7.93 -51.93 -0.41 1.44 16 30 H 0.06 1.08 8.12 -51.93 -0.42 0.66 16 31 H 0.16 1.07 8.06 -52.48 -0.42 0.65 16 32 H 0.17 0.61 8.06 -52.49 -0.42 0.18 16 33 H 0.18 1.66 8.06 -52.49 -0.42 1.23 16 LS Contribution 306.01 15.07 4.61 4.61 Total: -1.00 -32.11 306.01 -7.89 -39.99 By element: Atomic # 1 Polarization: -0.95 SS G_CDS: -3.57 Total: -4.51 kcal Atomic # 6 Polarization: -1.76 SS G_CDS: -1.46 Total: -3.22 kcal Atomic # 7 Polarization: -53.85 SS G_CDS: -0.16 Total: -54.01 kcal Atomic # 8 Polarization: 1.31 SS G_CDS: 0.19 Total: 1.49 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Atomic # 16 Polarization: 1.24 SS G_CDS: -2.48 Total: -1.24 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -32.11 -7.89 -39.99 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000175583126.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.701 kcal (2) G-P(sol) polarization free energy of solvation -32.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 119.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.994 kcal (6) G-S(sol) free energy of system = (1) + (5) 111.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds