Wall clock time and date at job start Wed Apr 15 2020 11:43:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46900 * 111.00370 * 2 1 4 4 C 1.50703 * 109.46985 * 66.04099 * 3 2 1 5 5 H 1.07994 * 120.00380 * 0.02562 * 4 3 2 6 6 C 1.37883 * 119.99694 * 180.02562 * 4 3 2 7 7 N 1.31516 * 119.99684 * 0.02562 * 6 4 3 8 8 Si 1.86792 * 120.00082 * 180.02562 * 6 4 3 9 9 H 1.48501 * 109.47197 * 89.99892 * 8 6 4 10 10 H 1.48498 * 109.47269 * 210.00168 * 8 6 4 11 11 H 1.48508 * 109.47169 * 330.00126 * 8 6 4 12 12 C 1.46896 * 111.00444 * 236.03788 * 2 1 3 13 13 C 1.50706 * 109.47403 * 293.96232 * 12 2 1 14 14 N 1.30038 * 126.16758 * 269.99684 * 13 12 2 15 15 O 1.21281 * 110.53023 * 179.74381 * 14 13 12 16 16 C 1.34269 * 109.68803 * 0.40208 * 15 14 13 17 17 C 1.47421 * 126.69756 * 179.86573 * 16 15 14 18 18 C 1.44335 * 123.32894 * 359.68972 * 17 16 15 19 19 C 1.32924 * 112.98974 * 179.97438 * 18 17 16 20 20 S 1.75552 * 110.34223 * 359.97438 * 19 18 17 21 21 C 1.34824 * 123.32524 * 179.66345 * 17 16 15 22 22 N 1.32327 * 106.60140 * 359.60415 * 16 15 14 23 23 H 1.08997 * 109.47213 * 183.95741 * 1 2 3 24 24 H 1.09000 * 109.47122 * 303.96316 * 1 2 3 25 25 H 1.08999 * 109.46955 * 63.95352 * 1 2 3 26 26 H 1.09003 * 109.47249 * 186.04334 * 3 2 1 27 27 H 1.08995 * 109.46638 * 306.04500 * 3 2 1 28 28 H 0.97004 * 119.99679 * 179.97438 * 7 6 4 29 29 H 1.08994 * 109.47430 * 173.95458 * 12 2 1 30 30 H 1.09002 * 109.46435 * 53.95697 * 12 2 1 31 31 H 1.08007 * 123.50856 * 359.94169 * 18 17 16 32 32 H 1.08000 * 124.83191 * 179.73519 * 19 18 17 33 33 H 1.08000 * 124.52387 * 0.02562 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6369 2.0471 1.2984 5 1 1.0745 1.5114 2.0487 6 6 2.0268 3.3495 1.5284 7 7 2.7112 4.0021 0.6144 8 14 1.5830 4.1870 3.1380 9 1 2.6604 3.9508 4.1324 10 1 1.4301 5.6465 2.9110 11 1 0.3056 3.6292 3.6505 12 6 1.9955 -0.7661 -1.1374 13 6 1.6369 -2.2206 -0.9726 14 7 2.3498 -3.1227 -0.3654 15 8 1.7907 -4.1985 -0.3963 16 6 0.6278 -4.0850 -1.0579 17 6 -0.3464 -5.1605 -1.3180 18 6 -0.1587 -6.5232 -0.8810 19 6 -1.1639 -7.3219 -1.2253 20 16 -2.3863 -6.4199 -2.1051 21 6 -1.5009 -4.9682 -1.9871 22 7 0.5243 -2.8182 -1.4259 23 1 -0.3633 -1.0252 0.0709 24 1 -0.3633 0.5741 0.8523 25 1 -0.3633 0.4512 -0.9233 26 1 3.0798 1.3443 -0.1082 27 1 1.5612 1.9272 -0.8309 28 1 2.9852 4.9185 0.7761 29 1 3.0797 -0.6612 -1.1754 30 1 1.5612 -0.3874 -2.0626 31 1 0.7085 -6.8592 -0.3317 32 1 -1.2189 -8.3767 -0.9996 33 1 -1.8222 -4.0207 -2.3938 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000175583126.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:33 Heat of formation + Delta-G solvation = 88.840082 kcal Electronic energy + Delta-G solvation = -18479.950574 eV Core-core repulsion = 15442.252582 eV Total energy + Delta-G solvation = -3037.697992 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 279.078 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -46.61584 -38.82579 -38.80711 -36.61026 -34.73073 -33.58014 -30.62638 -29.97948 -28.81901 -26.51746 -26.28727 -24.09948 -23.34583 -22.25871 -20.41965 -19.25372 -19.12528 -18.52245 -17.94319 -17.10471 -16.86601 -16.16724 -15.84728 -15.74706 -14.62098 -14.34908 -14.30990 -13.94682 -13.90107 -13.69820 -13.51832 -13.27665 -13.09697 -12.78724 -12.75154 -12.56158 -12.40476 -12.19313 -12.00614 -11.84733 -11.52131 -11.32293 -10.64745 -9.97349 -9.26769 -9.24501 -8.24204 -6.34346 -0.54285 0.37367 0.53483 0.90320 0.94945 1.40023 1.41751 1.52763 1.79501 1.88147 2.37154 2.47141 2.92061 3.08562 3.29769 3.82912 3.90840 4.17467 4.31956 4.38487 4.44004 4.50917 4.57634 4.65161 4.78453 4.95125 4.97210 5.08626 5.16002 5.17456 5.24712 5.57884 5.93748 6.13327 6.41130 6.78887 7.10484 7.34788 8.87133 Molecular weight = 279.08amu Principal moments of inertia in cm(-1) A = 0.035783 B = 0.003176 C = 0.003089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 782.307499 B = 8815.333021 C = 9063.125995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.049 3.951 2 N -0.547 5.547 3 C 0.210 3.790 4 C -0.528 4.528 5 H 0.060 0.940 6 C 0.005 3.995 7 N -0.931 5.931 8 Si 0.971 3.029 9 H -0.274 1.274 10 H -0.279 1.279 11 H -0.265 1.265 12 C 0.143 3.857 13 C 0.186 3.814 14 N -0.392 5.392 15 O 0.088 5.912 16 C 0.245 3.755 17 C -0.082 4.082 18 C -0.119 4.119 19 C -0.219 4.219 20 S 0.261 5.739 21 C -0.198 4.198 22 N -0.489 5.489 23 H 0.058 0.942 24 H 0.063 0.937 25 H 0.021 0.979 26 H 0.012 0.988 27 H -0.024 1.024 28 H 0.266 0.734 29 H 0.096 0.904 30 H 0.067 0.933 31 H 0.166 0.834 32 H 0.206 0.794 33 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.033 -25.086 -6.549 28.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 N -0.273 5.273 3 C 0.084 3.916 4 C -0.566 4.566 5 H 0.078 0.922 6 C -0.194 4.194 7 N -0.571 5.571 8 Si 0.795 3.205 9 H -0.199 1.199 10 H -0.204 1.204 11 H -0.190 1.190 12 C 0.014 3.986 13 C -0.087 4.087 14 N -0.099 5.099 15 O 0.027 5.973 16 C 0.027 3.973 17 C -0.100 4.100 18 C -0.148 4.148 19 C -0.354 4.354 20 S 0.526 5.474 21 C -0.338 4.338 22 N -0.223 5.223 23 H 0.076 0.924 24 H 0.081 0.919 25 H 0.040 0.960 26 H 0.030 0.970 27 H -0.007 1.007 28 H 0.075 0.925 29 H 0.114 0.886 30 H 0.085 0.915 31 H 0.184 0.816 32 H 0.223 0.777 33 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -11.565 -24.969 -6.627 28.304 hybrid contribution 1.352 1.752 0.550 2.281 sum -10.213 -23.217 -6.077 26.082 Atomic orbital electron populations 1.22125 0.87030 1.00355 1.00385 1.61987 1.08768 1.16312 1.40192 1.19432 0.94113 0.82212 0.95817 1.21392 1.35388 0.97607 1.02200 0.92166 1.25888 0.94858 0.97848 1.00776 1.70072 1.39045 1.11990 1.36036 0.85357 0.78907 0.77357 0.78843 1.19917 1.20402 1.18969 1.20256 1.01268 0.83021 0.94102 1.25562 0.88067 0.99257 0.95833 1.74591 1.21352 0.92652 1.21341 1.85366 1.28283 1.27497 1.56194 1.26324 0.87658 0.92389 0.90975 1.17473 0.93312 0.90645 1.08524 1.21317 1.01895 0.89201 1.02357 1.25975 0.97816 1.05804 1.05783 1.83059 1.19721 0.94018 1.50599 1.25509 0.98269 1.07141 1.02883 1.72143 1.21643 1.03783 1.24752 0.92353 0.91858 0.96014 0.97032 1.00657 0.92481 0.88622 0.91494 0.81646 0.77672 0.80813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 2.11 9.18 127.69 1.17 3.29 16 2 N -0.55 -25.77 4.74 -931.67 -4.42 -30.18 16 3 C 0.21 11.51 4.72 85.56 0.40 11.92 16 4 C -0.53 -30.71 8.46 25.60 0.22 -30.50 16 5 H 0.06 3.48 7.12 -2.91 -0.02 3.46 16 6 C 0.00 0.28 5.46 84.66 0.46 0.74 16 7 N -0.93 -56.36 13.29 21.45 0.28 -56.08 16 8 Si 0.97 44.97 29.54 68.60 2.03 46.99 16 9 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 10 H -0.28 -12.46 7.11 99.48 0.71 -11.76 16 11 H -0.27 -11.84 7.11 99.48 0.71 -11.14 16 12 C 0.14 5.79 5.59 85.56 0.48 6.27 16 13 C 0.19 7.06 6.80 138.54 0.94 8.00 16 14 N -0.39 -14.74 12.14 -58.39 -0.71 -15.44 16 15 O 0.09 2.78 11.33 69.00 0.78 3.56 16 16 C 0.24 7.10 8.14 87.15 0.71 7.81 16 17 C -0.08 -1.70 5.94 -20.09 -0.12 -1.82 16 18 C -0.12 -1.70 10.37 22.65 0.23 -1.46 16 19 C -0.22 -1.92 11.14 66.65 0.74 -1.18 16 20 S 0.26 2.44 23.03 -56.49 -1.30 1.14 16 21 C -0.20 -3.36 10.67 67.04 0.72 -2.64 16 22 N -0.49 -16.65 10.79 -302.58 -3.27 -19.91 16 23 H 0.06 2.32 6.74 -2.39 -0.02 2.30 16 24 H 0.06 2.85 6.76 -2.39 -0.02 2.83 16 25 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 26 H 0.01 0.67 7.93 -2.39 -0.02 0.66 16 27 H -0.02 -1.41 8.12 -2.39 -0.02 -1.43 16 28 H 0.27 15.09 8.31 -92.71 -0.77 14.32 16 29 H 0.10 3.82 7.93 -2.39 -0.02 3.80 16 30 H 0.07 2.56 8.12 -2.39 -0.02 2.54 16 31 H 0.17 1.95 8.06 -2.91 -0.02 1.92 16 32 H 0.21 0.42 8.06 -2.91 -0.02 0.40 16 33 H 0.17 3.06 8.06 -2.91 -0.02 3.04 16 Total: -1.00 -69.81 306.01 0.49 -69.32 By element: Atomic # 1 Polarization: -0.96 SS G_CDS: 1.13 Total: 0.17 kcal Atomic # 6 Polarization: -5.54 SS G_CDS: 5.96 Total: 0.42 kcal Atomic # 7 Polarization: -113.51 SS G_CDS: -8.11 Total: -121.62 kcal Atomic # 8 Polarization: 2.78 SS G_CDS: 0.78 Total: 3.56 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 2.03 Total: 46.99 kcal Atomic # 16 Polarization: 2.44 SS G_CDS: -1.30 Total: 1.14 kcal Total: -69.81 0.49 -69.32 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000175583126.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 158.164 kcal (2) G-P(sol) polarization free energy of solvation -69.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.324 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds