Wall clock time and date at job start Wed Apr 15 2020 11:43:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46505 * 109.46754 * 2 1 4 4 C 1.37099 * 119.99946 * 263.88035 * 3 2 1 5 5 H 1.07996 * 119.99818 * 188.42309 * 4 3 2 6 6 C 1.38946 * 119.99837 * 8.42453 * 4 3 2 7 7 N 1.31415 * 120.00352 * 24.55335 * 6 4 3 8 8 Si 1.86808 * 119.99939 * 204.55572 * 6 4 3 9 9 H 1.48499 * 109.47064 * 84.98837 * 8 6 4 10 10 H 1.48502 * 109.46748 * 204.98800 * 8 6 4 11 11 H 1.48501 * 109.46766 * 324.98636 * 8 6 4 12 12 C 1.34773 * 119.99813 * 83.88690 * 3 2 1 13 13 O 1.21300 * 119.99802 * 179.97438 * 12 3 2 14 14 C 1.50700 * 120.00478 * 359.97438 * 12 3 2 15 15 H 1.09002 * 112.82361 * 311.11542 * 14 12 3 16 16 C 1.53520 * 113.58987 * 179.97438 * 14 12 3 17 17 C 1.51599 * 87.34054 * 245.36727 * 16 14 12 18 18 C 1.39216 * 92.65912 * 0.04313 * 17 16 14 19 19 C 1.38339 * 119.72144 * 180.02562 * 18 17 16 20 20 C 1.38141 * 120.36081 * 359.92669 * 19 18 17 21 21 C 1.38187 * 119.96388 * 0.02562 * 20 19 18 22 22 C 1.38250 * 119.94285 * 359.97438 * 21 20 19 23 23 Cl 1.73599 * 119.85299 * 180.02562 * 22 21 20 24 24 H 1.08999 * 109.47159 * 60.00033 * 1 2 3 25 25 H 1.09005 * 109.47107 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.46955 * 299.99645 * 1 2 3 27 27 H 1.08999 * 109.46955 * 240.00355 * 2 1 3 28 28 H 1.08999 * 109.47159 * 119.99967 * 2 1 3 29 29 H 0.96994 * 120.00096 * 179.97438 * 7 6 4 30 30 H 1.08995 * 113.58351 * 0.02562 * 16 14 12 31 31 H 1.09004 * 113.58521 * 130.73187 * 16 14 12 32 32 H 1.08003 * 119.82229 * 179.97438 * 19 18 17 33 33 H 1.07990 * 120.02145 * 180.02562 * 20 19 18 34 34 H 1.08005 * 120.02530 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3661 1.9854 -1.1806 5 1 2.8520 2.9498 -1.1709 6 6 2.0933 1.3569 -2.3893 7 7 1.1217 0.4754 -2.4671 8 14 3.1077 1.7647 -3.9040 9 1 4.3392 0.9350 -3.9132 10 1 2.3107 1.4813 -5.1245 11 1 3.4795 3.2022 -3.8783 12 6 2.1257 2.0580 1.1606 13 8 2.5304 3.2015 1.1606 14 6 1.7430 1.3942 2.4582 15 1 0.7685 0.9079 2.4131 16 6 1.9233 2.2970 3.6867 17 6 2.9979 1.3330 4.1495 18 6 2.8351 0.5148 3.0350 19 6 3.6135 -0.6205 2.8979 20 6 4.5509 -0.9446 3.8595 21 6 4.7140 -0.1327 4.9657 22 6 3.9390 1.0033 5.1082 23 17 4.1463 2.0220 6.4985 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 0.9311 0.0369 -3.3110 30 1 2.3021 3.2903 3.4461 31 1 1.0510 2.3241 4.3398 32 1 3.4883 -1.2566 2.0341 33 1 5.1559 -1.8320 3.7468 34 1 5.4469 -0.3849 5.7179 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000528175153.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:07 Heat of formation + Delta-G solvation = 16.637487 kcal Electronic energy + Delta-G solvation = -19552.581081 eV Core-core repulsion = 16477.415692 eV Total energy + Delta-G solvation = -3075.165389 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 279.077 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.92710 -39.86147 -37.56418 -37.12540 -35.99306 -33.78645 -31.57457 -31.20558 -28.87796 -27.41303 -25.61268 -23.99248 -23.08603 -21.91382 -20.15416 -18.86479 -18.32967 -17.74463 -16.78759 -16.64151 -15.99162 -15.88487 -15.66330 -15.02119 -14.53446 -14.23801 -14.19173 -14.01891 -13.72201 -13.30514 -13.07296 -13.02484 -12.74418 -12.63743 -12.42420 -12.32331 -12.13346 -12.04346 -11.78530 -11.62575 -11.61011 -10.84208 -10.53954 -9.72418 -9.64414 -9.58161 -8.34666 -5.84907 0.15718 0.20668 1.16382 1.35275 1.43184 1.52956 1.92454 2.27126 2.58819 2.96645 3.03094 3.19982 3.37349 3.58389 3.99324 4.04579 4.25264 4.32116 4.48046 4.53887 4.63403 4.79129 4.84981 4.88834 4.89737 5.04636 5.15518 5.18303 5.36435 5.42311 5.49187 5.58577 5.82262 5.91601 6.07251 6.53040 7.17685 7.49003 8.04959 8.62976 Molecular weight = 279.08amu Principal moments of inertia in cm(-1) A = 0.026932 B = 0.004886 C = 0.004821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1039.392210 B = 5729.394107 C = 5806.695865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.120 3.880 3 N -0.441 5.441 4 C -0.352 4.352 5 H 0.070 0.930 6 C 0.010 3.990 7 N -0.864 5.864 8 Si 0.978 3.022 9 H -0.270 1.270 10 H -0.271 1.271 11 H -0.281 1.281 12 C 0.442 3.558 13 O -0.637 6.637 14 C -0.055 4.055 15 H 0.128 0.872 16 C -0.049 4.049 17 C -0.130 4.130 18 C -0.115 4.115 19 C -0.098 4.098 20 C -0.097 4.097 21 C -0.109 4.109 22 C -0.021 4.021 23 Cl -0.077 7.077 24 H 0.060 0.940 25 H 0.067 0.933 26 H 0.035 0.965 27 H 0.084 0.916 28 H 0.062 0.938 29 H 0.275 0.725 30 H 0.085 0.915 31 H 0.121 0.879 32 H 0.134 0.866 33 H 0.173 0.827 34 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.757 -7.957 12.149 14.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.002 4.002 3 N -0.158 5.158 4 C -0.479 4.479 5 H 0.088 0.912 6 C -0.194 4.194 7 N -0.501 5.501 8 Si 0.802 3.198 9 H -0.195 1.195 10 H -0.196 1.196 11 H -0.207 1.207 12 C 0.232 3.768 13 O -0.525 6.525 14 C -0.076 4.076 15 H 0.145 0.855 16 C -0.086 4.086 17 C -0.131 4.131 18 C -0.116 4.116 19 C -0.116 4.116 20 C -0.115 4.115 21 C -0.127 4.127 22 C -0.048 4.048 23 Cl -0.048 7.048 24 H 0.079 0.921 25 H 0.086 0.914 26 H 0.054 0.946 27 H 0.102 0.898 28 H 0.080 0.920 29 H 0.085 0.915 30 H 0.104 0.896 31 H 0.139 0.861 32 H 0.152 0.848 33 H 0.190 0.810 34 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 2.867 -7.487 12.083 14.501 hybrid contribution 0.258 0.603 -0.920 1.130 sum 3.125 -6.883 11.163 13.482 Atomic orbital electron populations 1.22006 0.95507 1.01395 1.00967 1.21575 0.95426 0.82018 1.01223 1.43969 1.54572 1.12306 1.04931 1.19569 1.38671 1.05650 0.84024 0.91247 1.25797 0.96171 0.96779 1.00649 1.70175 1.24426 1.27821 1.27728 0.85198 0.78769 0.78379 0.77458 1.19491 1.19555 1.20659 1.20142 0.84781 0.86304 0.85609 1.90460 1.54114 1.20594 1.87382 1.21441 0.98607 0.94981 0.92550 0.85460 1.21740 0.96374 0.97242 0.93264 1.22169 0.97511 0.98807 0.94578 1.22015 0.98301 0.95519 0.95802 1.20813 0.95057 0.95567 1.00208 1.21335 0.97328 1.00608 0.92251 1.21276 0.99187 0.92401 0.99843 1.20477 0.99113 0.95260 0.89902 1.98343 1.96733 1.68370 1.41391 0.92074 0.91425 0.94626 0.89810 0.91973 0.91492 0.89646 0.86060 0.84827 0.80980 0.81764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.52 9.58 71.98 0.69 -4.83 16 2 C 0.12 5.12 5.02 86.38 0.43 5.56 16 3 N -0.44 -22.51 2.64 -635.53 -1.68 -24.19 16 4 C -0.35 -19.85 9.43 84.04 0.79 -19.05 16 5 H 0.07 4.31 7.30 -2.91 -0.02 4.29 16 6 C 0.01 0.50 4.91 84.92 0.42 0.91 16 7 N -0.86 -42.61 8.59 21.66 0.19 -42.42 16 8 Si 0.98 41.44 29.62 68.60 2.03 43.47 16 9 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 10 H -0.27 -10.81 7.11 99.48 0.71 -10.10 16 11 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 12 C 0.44 22.08 7.12 87.66 0.62 22.71 16 13 O -0.64 -37.12 15.30 -3.09 -0.05 -37.17 16 14 C -0.05 -2.06 3.04 -11.83 -0.04 -2.10 16 15 H 0.13 4.25 6.23 -2.39 -0.01 4.24 16 16 C -0.05 -1.67 7.76 30.30 0.24 -1.44 16 17 C -0.13 -4.23 7.27 -19.33 -0.14 -4.37 16 18 C -0.12 -3.90 6.24 -19.33 -0.12 -4.02 16 19 C -0.10 -2.78 9.65 22.27 0.21 -2.57 16 20 C -0.10 -2.14 10.04 22.23 0.22 -1.92 16 21 C -0.11 -2.46 9.82 22.26 0.22 -2.24 16 22 C -0.02 -0.59 6.31 22.29 0.14 -0.45 16 23 Cl -0.08 -1.96 28.94 -2.72 -0.08 -2.04 16 24 H 0.06 2.82 6.36 -2.39 -0.02 2.80 16 25 H 0.07 2.22 8.14 -2.38 -0.02 2.21 16 26 H 0.03 1.28 6.53 -2.39 -0.02 1.27 16 27 H 0.08 3.87 5.83 -2.39 -0.01 3.86 16 28 H 0.06 2.27 5.18 -2.39 -0.01 2.26 16 29 H 0.27 12.66 8.31 -92.71 -0.77 11.89 16 30 H 0.09 3.36 7.04 -2.39 -0.02 3.34 16 31 H 0.12 3.25 8.14 -2.39 -0.02 3.23 16 32 H 0.13 3.50 7.21 -2.91 -0.02 3.48 16 33 H 0.17 2.42 8.06 -2.92 -0.02 2.40 16 34 H 0.16 2.66 8.06 -2.91 -0.02 2.63 16 Total: -1.00 -65.68 294.99 5.24 -60.44 By element: Atomic # 1 Polarization: 14.60 SS G_CDS: 1.13 Total: 15.74 kcal Atomic # 6 Polarization: -17.51 SS G_CDS: 3.69 Total: -13.82 kcal Atomic # 7 Polarization: -65.12 SS G_CDS: -1.49 Total: -66.61 kcal Atomic # 8 Polarization: -37.12 SS G_CDS: -0.05 Total: -37.17 kcal Atomic # 14 Polarization: 41.44 SS G_CDS: 2.03 Total: 43.47 kcal Atomic # 17 Polarization: -1.96 SS G_CDS: -0.08 Total: -2.04 kcal Total: -65.68 5.24 -60.44 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000528175153.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.077 kcal (2) G-P(sol) polarization free energy of solvation -65.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.439 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds