Wall clock time and date at job start Wed Apr 15 2020 11:43:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46500 * 109.47115 * 2 1 4 4 C 1.37098 * 119.99961 * 96.29399 * 3 2 1 5 5 H 1.08002 * 120.00247 * 159.67855 * 4 3 2 6 6 C 1.38957 * 119.99950 * 339.67213 * 4 3 2 7 7 N 1.31407 * 119.99886 * 356.78557 * 6 4 3 8 8 Si 1.86798 * 120.00068 * 176.78051 * 6 4 3 9 9 H 1.48502 * 109.47095 * 60.00017 * 8 6 4 10 10 H 1.48498 * 109.47385 * 180.02562 * 8 6 4 11 11 H 1.48505 * 109.47013 * 300.00474 * 8 6 4 12 12 C 1.34775 * 120.00193 * 276.29597 * 3 2 1 13 13 O 1.21293 * 119.99967 * 185.98347 * 12 3 2 14 14 C 1.50703 * 120.00011 * 5.98763 * 12 3 2 15 15 H 1.08996 * 112.88285 * 37.23641 * 14 12 3 16 16 C 1.52260 * 113.58679 * 168.40971 * 14 12 3 17 17 C 1.50557 * 87.23274 * 114.58990 * 16 14 12 18 18 C 1.37741 * 92.76908 * 359.97438 * 17 16 14 19 19 C 1.38771 * 119.93728 * 180.02562 * 18 17 16 20 20 C 1.38117 * 120.11906 * 0.28018 * 19 18 17 21 21 C 1.38175 * 119.99450 * 359.44616 * 20 19 18 22 22 C 1.38227 * 119.96368 * 0.55148 * 21 20 19 23 23 Cl 1.73598 * 119.96729 * 179.74866 * 22 21 20 24 24 H 1.08999 * 109.46683 * 188.89897 * 1 2 3 25 25 H 1.08996 * 109.47106 * 308.89992 * 1 2 3 26 26 H 1.09000 * 109.47188 * 68.90134 * 1 2 3 27 27 H 1.09003 * 109.47137 * 240.00560 * 2 1 3 28 28 H 1.08998 * 109.47204 * 120.00086 * 2 1 3 29 29 H 0.96998 * 120.00284 * 180.02562 * 7 6 4 30 30 H 1.08997 * 113.59236 * 0.02562 * 16 14 12 31 31 H 1.09007 * 113.65727 * 229.18225 * 16 14 12 32 32 H 1.07999 * 119.94145 * 179.97438 * 19 18 17 33 33 H 1.08003 * 120.00564 * 179.72256 * 20 19 18 34 34 H 1.07998 * 120.01437 * 180.25801 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3696 1.9841 1.1802 5 1 3.0202 2.8461 1.1735 6 6 1.8883 1.4861 2.3849 7 7 1.0467 0.4770 2.3894 8 14 2.4379 2.2512 3.9980 9 1 2.0520 3.6850 4.0227 10 1 1.7864 1.5431 5.1290 11 1 3.9129 2.1333 4.1245 12 6 2.1223 2.0593 -1.1601 13 8 2.6273 3.1620 -1.1749 14 6 1.6111 1.4474 -2.4389 15 1 0.6947 0.8743 -2.2978 16 6 1.5425 2.4302 -3.5998 17 6 2.6056 1.6008 -4.2695 18 6 2.6681 0.7120 -3.2191 19 6 3.5474 -0.3604 -3.2706 20 6 4.3641 -0.5347 -4.3707 21 6 4.2983 0.3530 -5.4275 22 6 3.4230 1.4217 -5.3779 23 17 3.3450 2.5408 -6.7027 24 1 -0.3633 -1.0153 0.1590 25 1 -0.3633 0.6453 0.7997 26 1 -0.3633 0.3699 -0.9588 27 1 1.8934 -0.5138 -0.8901 28 1 1.8934 -0.5138 0.8900 29 1 0.7105 0.1296 3.2303 30 1 1.8734 3.4358 -3.3401 31 1 0.5872 2.4213 -4.1247 32 1 3.5967 -1.0571 -2.4469 33 1 5.0510 -1.3674 -4.4070 34 1 4.9338 0.2146 -6.2897 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000528175156.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:10 Heat of formation + Delta-G solvation = 34.413053 kcal Electronic energy + Delta-G solvation = -19518.787876 eV Core-core repulsion = 16444.393293 eV Total energy + Delta-G solvation = -3074.394583 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 279.077 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.77038 -38.22668 -36.43026 -35.46616 -34.63606 -31.77220 -30.35973 -29.46690 -27.56217 -25.73271 -24.06822 -22.30917 -21.73833 -20.60847 -18.54236 -17.05266 -16.85533 -16.31920 -15.51360 -14.86067 -14.79219 -14.07343 -13.94407 -13.49043 -13.20066 -12.90253 -12.77607 -12.64978 -12.07545 -11.71224 -11.48313 -11.41028 -11.26570 -11.09693 -11.06033 -10.78953 -10.60429 -10.43201 -10.33802 -10.11973 -9.96910 -8.96315 -8.88114 -8.48458 -8.19052 -7.70439 -6.27991 -3.91065 1.28672 1.36714 2.27341 3.15844 3.22701 3.26746 3.62219 3.77329 4.10298 4.40789 4.59371 4.79873 4.98646 5.04734 5.16287 5.39844 5.56484 5.63864 5.74601 5.82144 5.90303 6.11896 6.19845 6.22999 6.42067 6.46302 6.58455 6.65910 6.76683 6.80514 6.97182 7.32112 7.48300 7.70556 8.09445 8.48994 9.14029 9.39389 9.93194 10.66865 Molecular weight = 279.08amu Principal moments of inertia in cm(-1) A = 0.029947 B = 0.004727 C = 0.004567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 934.759412 B = 5921.675298 C = 6129.542472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.124 3.876 3 N -0.438 5.438 4 C -0.298 4.298 5 H 0.099 0.901 6 C 0.027 3.973 7 N -0.880 5.880 8 Si 0.930 3.070 9 H -0.274 1.274 10 H -0.284 1.284 11 H -0.275 1.275 12 C 0.463 3.537 13 O -0.584 6.584 14 C -0.064 4.064 15 H 0.115 0.885 16 C -0.055 4.055 17 C -0.111 4.111 18 C -0.088 4.088 19 C -0.088 4.088 20 C -0.110 4.110 21 C -0.116 4.116 22 C -0.010 4.010 23 Cl -0.085 7.085 24 H 0.039 0.961 25 H 0.088 0.912 26 H 0.018 0.982 27 H 0.027 0.973 28 H 0.109 0.891 29 H 0.266 0.734 30 H 0.112 0.888 31 H 0.092 0.908 32 H 0.126 0.874 33 H 0.133 0.867 34 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.205 -4.593 -11.509 12.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.001 3.999 3 N -0.155 5.155 4 C -0.426 4.426 5 H 0.117 0.883 6 C -0.175 4.175 7 N -0.521 5.521 8 Si 0.757 3.243 9 H -0.199 1.199 10 H -0.209 1.209 11 H -0.200 1.200 12 C 0.250 3.750 13 O -0.469 6.469 14 C -0.085 4.085 15 H 0.133 0.867 16 C -0.092 4.092 17 C -0.112 4.112 18 C -0.089 4.089 19 C -0.106 4.106 20 C -0.128 4.128 21 C -0.135 4.135 22 C -0.037 4.037 23 Cl -0.056 7.056 24 H 0.058 0.942 25 H 0.106 0.894 26 H 0.037 0.963 27 H 0.045 0.955 28 H 0.127 0.873 29 H 0.077 0.923 30 H 0.130 0.870 31 H 0.111 0.889 32 H 0.144 0.856 33 H 0.151 0.849 34 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 1.362 -4.085 -11.438 12.221 hybrid contribution 0.201 0.114 0.669 0.708 sum 1.563 -3.972 -10.769 11.584 Atomic orbital electron populations 1.22121 0.96748 1.01083 0.99927 1.21471 0.94466 0.83449 1.00563 1.43710 1.55448 1.11165 1.05206 1.19705 1.27281 1.13256 0.82361 0.88322 1.25317 0.95730 0.96780 0.99624 1.70054 1.30387 1.24753 1.26930 0.85935 0.78757 0.79177 0.80452 1.19892 1.20930 1.20016 1.19385 0.85403 0.86051 0.84178 1.90510 1.48964 1.21464 1.85953 1.21305 0.97169 0.95476 0.94578 0.86737 1.21435 0.95845 0.99857 0.92075 1.21764 0.97812 0.98842 0.92776 1.21627 0.97218 0.94314 0.95745 1.20623 0.94645 0.97029 0.98279 1.20875 0.99403 0.99494 0.93053 1.20818 0.98725 0.94007 0.99940 1.20398 0.99946 0.93991 0.89352 1.98340 1.97844 1.62114 1.47304 0.94169 0.89354 0.96321 0.95503 0.87344 0.92302 0.87017 0.88940 0.85558 0.84877 0.84940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.84 9.25 37.16 0.34 -2.50 16 2 C 0.12 2.69 4.96 -4.04 -0.02 2.67 16 3 N -0.44 -10.90 2.64 -114.81 -0.30 -11.20 16 4 C -0.30 -8.07 9.39 -14.93 -0.14 -8.21 16 5 H 0.10 2.83 7.31 -52.49 -0.38 2.44 16 6 C 0.03 0.68 5.27 -17.47 -0.09 0.59 16 7 N -0.88 -21.80 7.94 55.50 0.44 -21.36 16 8 Si 0.93 20.28 29.55 -169.99 -5.02 15.25 16 9 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 10 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 11 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 12 C 0.46 11.16 7.06 -10.98 -0.08 11.09 16 13 O -0.58 -16.08 15.42 5.55 0.09 -15.99 16 14 C -0.06 -1.21 3.00 -93.66 -0.28 -1.49 16 15 H 0.11 1.99 5.50 -51.93 -0.29 1.71 16 16 C -0.06 -0.94 7.68 -28.62 -0.22 -1.16 16 17 C -0.11 -1.87 7.21 -104.93 -0.76 -2.63 16 18 C -0.09 -1.54 6.51 -104.96 -0.68 -2.23 16 19 C -0.09 -1.34 10.06 -39.43 -0.40 -1.74 16 20 C -0.11 -1.42 10.04 -39.65 -0.40 -1.82 16 21 C -0.12 -1.53 9.82 -39.61 -0.39 -1.91 16 22 C -0.01 -0.16 6.33 -39.35 -0.25 -0.41 16 23 Cl -0.08 -1.16 28.96 -51.86 -1.50 -2.66 16 24 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 25 H 0.09 2.06 6.43 -51.93 -0.33 1.72 16 26 H 0.02 0.33 6.08 -51.93 -0.32 0.02 16 27 H 0.03 0.52 6.84 -51.93 -0.36 0.16 16 28 H 0.11 2.56 6.00 -51.93 -0.31 2.25 16 29 H 0.27 6.33 8.31 -40.82 -0.34 5.99 16 30 H 0.11 2.10 7.08 -51.93 -0.37 1.73 16 31 H 0.09 1.29 8.14 -51.93 -0.42 0.86 16 32 H 0.13 1.78 7.95 -52.49 -0.42 1.37 16 33 H 0.13 1.28 8.06 -52.48 -0.42 0.86 16 34 H 0.13 1.38 8.06 -52.49 -0.42 0.96 16 LS Contribution 296.32 15.07 4.47 4.47 Total: -1.00 -28.94 296.32 -8.79 -37.73 By element: Atomic # 1 Polarization: 7.10 SS G_CDS: -3.60 Total: 3.50 kcal Atomic # 6 Polarization: -6.39 SS G_CDS: -3.36 Total: -9.75 kcal Atomic # 7 Polarization: -32.69 SS G_CDS: 0.14 Total: -32.56 kcal Atomic # 8 Polarization: -16.08 SS G_CDS: 0.09 Total: -15.99 kcal Atomic # 14 Polarization: 20.28 SS G_CDS: -5.02 Total: 15.25 kcal Atomic # 17 Polarization: -1.16 SS G_CDS: -1.50 Total: -2.66 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -28.94 -8.79 -37.73 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000528175156.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.148 kcal (2) G-P(sol) polarization free energy of solvation -28.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.735 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds