Wall clock time and date at job start Wed Apr 15 2020 11:43:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46500 * 109.47115 * 2 1 4 4 C 1.37098 * 119.99961 * 96.29399 * 3 2 1 5 5 H 1.08002 * 120.00247 * 159.67855 * 4 3 2 6 6 C 1.38957 * 119.99950 * 339.67213 * 4 3 2 7 7 N 1.31407 * 119.99886 * 356.78557 * 6 4 3 8 8 Si 1.86798 * 120.00068 * 176.78051 * 6 4 3 9 9 H 1.48502 * 109.47095 * 60.00017 * 8 6 4 10 10 H 1.48498 * 109.47385 * 180.02562 * 8 6 4 11 11 H 1.48505 * 109.47013 * 300.00474 * 8 6 4 12 12 C 1.34775 * 120.00193 * 276.29597 * 3 2 1 13 13 O 1.21293 * 119.99967 * 185.98347 * 12 3 2 14 14 C 1.50703 * 120.00011 * 5.98763 * 12 3 2 15 15 H 1.08996 * 112.88285 * 37.23641 * 14 12 3 16 16 C 1.52260 * 113.58679 * 168.40971 * 14 12 3 17 17 C 1.50557 * 87.23274 * 114.58990 * 16 14 12 18 18 C 1.37741 * 92.76908 * 359.97438 * 17 16 14 19 19 C 1.38771 * 119.93728 * 180.02562 * 18 17 16 20 20 C 1.38117 * 120.11906 * 0.28018 * 19 18 17 21 21 C 1.38175 * 119.99450 * 359.44616 * 20 19 18 22 22 C 1.38227 * 119.96368 * 0.55148 * 21 20 19 23 23 Cl 1.73598 * 119.96729 * 179.74866 * 22 21 20 24 24 H 1.08999 * 109.46683 * 188.89897 * 1 2 3 25 25 H 1.08996 * 109.47106 * 308.89992 * 1 2 3 26 26 H 1.09000 * 109.47188 * 68.90134 * 1 2 3 27 27 H 1.09003 * 109.47137 * 240.00560 * 2 1 3 28 28 H 1.08998 * 109.47204 * 120.00086 * 2 1 3 29 29 H 0.96998 * 120.00284 * 180.02562 * 7 6 4 30 30 H 1.08997 * 113.59236 * 0.02562 * 16 14 12 31 31 H 1.09007 * 113.65727 * 229.18225 * 16 14 12 32 32 H 1.07999 * 119.94145 * 179.97438 * 19 18 17 33 33 H 1.08003 * 120.00564 * 179.72256 * 20 19 18 34 34 H 1.07998 * 120.01437 * 180.25801 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3696 1.9841 1.1802 5 1 3.0202 2.8461 1.1735 6 6 1.8883 1.4861 2.3849 7 7 1.0467 0.4770 2.3894 8 14 2.4379 2.2512 3.9980 9 1 2.0520 3.6850 4.0227 10 1 1.7864 1.5431 5.1290 11 1 3.9129 2.1333 4.1245 12 6 2.1223 2.0593 -1.1601 13 8 2.6273 3.1620 -1.1749 14 6 1.6111 1.4474 -2.4389 15 1 0.6947 0.8743 -2.2978 16 6 1.5425 2.4302 -3.5998 17 6 2.6056 1.6008 -4.2695 18 6 2.6681 0.7120 -3.2191 19 6 3.5474 -0.3604 -3.2706 20 6 4.3641 -0.5347 -4.3707 21 6 4.2983 0.3530 -5.4275 22 6 3.4230 1.4217 -5.3779 23 17 3.3450 2.5408 -6.7027 24 1 -0.3633 -1.0153 0.1590 25 1 -0.3633 0.6453 0.7997 26 1 -0.3633 0.3699 -0.9588 27 1 1.8934 -0.5138 -0.8901 28 1 1.8934 -0.5138 0.8900 29 1 0.7105 0.1296 3.2303 30 1 1.8734 3.4358 -3.3401 31 1 0.5872 2.4213 -4.1247 32 1 3.5967 -1.0571 -2.4469 33 1 5.0510 -1.3674 -4.4070 34 1 4.9338 0.2146 -6.2897 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000528175156.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:10 Heat of formation + Delta-G solvation = 19.767172 kcal Electronic energy + Delta-G solvation = -19519.422969 eV Core-core repulsion = 16444.393293 eV Total energy + Delta-G solvation = -3075.029676 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 279.077 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.12216 -39.89924 -37.60191 -37.12463 -36.10146 -33.70609 -31.53320 -31.21917 -28.88504 -27.37693 -25.65951 -23.95463 -23.08686 -21.91766 -20.14394 -18.92743 -18.32144 -17.82625 -16.78048 -16.62243 -15.97945 -15.82288 -15.60226 -15.09505 -14.59062 -14.24704 -14.21867 -13.98942 -13.69506 -13.23085 -13.13371 -12.89725 -12.81438 -12.64866 -12.42461 -12.34116 -12.13946 -11.97959 -11.79874 -11.72911 -11.57653 -10.81904 -10.56989 -9.64354 -9.61839 -9.60924 -8.22057 -5.93674 0.13450 0.22256 1.16022 1.39066 1.42745 1.51733 1.91693 2.27674 2.58632 2.99141 3.09600 3.21998 3.39990 3.63296 4.01353 4.03864 4.23429 4.33045 4.49541 4.55190 4.62090 4.79285 4.85511 4.92494 4.94965 5.04400 5.16203 5.21512 5.35637 5.42020 5.55992 5.59648 5.81894 5.93983 6.13442 6.55945 7.17976 7.49104 8.03093 8.69621 Molecular weight = 279.08amu Principal moments of inertia in cm(-1) A = 0.029947 B = 0.004727 C = 0.004567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 934.759412 B = 5921.675298 C = 6129.542472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.127 3.873 3 N -0.448 5.448 4 C -0.342 4.342 5 H 0.067 0.933 6 C 0.003 3.997 7 N -0.878 5.878 8 Si 0.987 3.013 9 H -0.281 1.281 10 H -0.267 1.267 11 H -0.274 1.274 12 C 0.452 3.548 13 O -0.632 6.632 14 C -0.060 4.060 15 H 0.128 0.872 16 C -0.053 4.053 17 C -0.126 4.126 18 C -0.116 4.116 19 C -0.098 4.098 20 C -0.099 4.099 21 C -0.108 4.108 22 C -0.023 4.023 23 Cl -0.075 7.075 24 H 0.062 0.938 25 H 0.055 0.945 26 H 0.036 0.964 27 H 0.053 0.947 28 H 0.088 0.912 29 H 0.272 0.728 30 H 0.085 0.915 31 H 0.122 0.878 32 H 0.134 0.866 33 H 0.173 0.827 34 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.518 -6.514 -12.648 14.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.004 3.996 3 N -0.165 5.165 4 C -0.470 4.470 5 H 0.085 0.915 6 C -0.199 4.199 7 N -0.517 5.517 8 Si 0.811 3.189 9 H -0.206 1.206 10 H -0.192 1.192 11 H -0.199 1.199 12 C 0.241 3.759 13 O -0.520 6.520 14 C -0.081 4.081 15 H 0.146 0.854 16 C -0.089 4.089 17 C -0.127 4.127 18 C -0.117 4.117 19 C -0.116 4.116 20 C -0.116 4.116 21 C -0.126 4.126 22 C -0.049 4.049 23 Cl -0.046 7.046 24 H 0.081 0.919 25 H 0.074 0.926 26 H 0.055 0.945 27 H 0.071 0.929 28 H 0.106 0.894 29 H 0.082 0.918 30 H 0.103 0.897 31 H 0.140 0.860 32 H 0.152 0.848 33 H 0.191 0.809 34 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 1.651 -6.050 -12.581 14.057 hybrid contribution 0.142 0.678 0.978 1.198 sum 1.793 -5.372 -11.603 12.911 Atomic orbital electron populations 1.21965 0.95485 1.01746 0.99685 1.21496 0.95433 0.81861 1.00761 1.43933 1.55369 1.12272 1.04951 1.19582 1.29163 1.13905 0.84318 0.91455 1.25928 0.95396 0.96994 1.01615 1.70147 1.29443 1.24300 1.27820 0.85101 0.78427 0.78052 0.77328 1.20636 1.19151 1.19901 1.20252 0.84420 0.85643 0.85600 1.90461 1.50943 1.23641 1.86999 1.21143 0.98197 0.96545 0.92221 0.85406 1.21378 0.97688 0.98078 0.91799 1.21724 0.98519 0.98718 0.93699 1.21561 0.98406 0.96043 0.95718 1.20917 0.94534 0.96584 0.99560 1.21329 0.98628 1.00072 0.91595 1.21274 0.97754 0.92669 1.00890 1.20624 1.00089 0.94898 0.89311 1.98342 1.97831 1.61953 1.46518 0.91917 0.92605 0.94500 0.92880 0.89396 0.91773 0.89668 0.86037 0.84763 0.80940 0.81731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.16 9.25 71.98 0.67 -4.50 16 2 C 0.13 5.49 4.96 86.38 0.43 5.92 16 3 N -0.45 -22.98 2.64 -635.52 -1.68 -24.65 16 4 C -0.34 -19.26 9.39 84.04 0.79 -18.47 16 5 H 0.07 4.12 7.31 -2.91 -0.02 4.10 16 6 C 0.00 0.13 5.27 84.93 0.45 0.58 16 7 N -0.88 -43.42 7.94 21.66 0.17 -43.24 16 8 Si 0.99 41.93 29.55 68.60 2.03 43.96 16 9 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 10 H -0.27 -10.57 7.11 99.48 0.71 -9.86 16 11 H -0.27 -11.54 7.11 99.48 0.71 -10.84 16 12 C 0.45 22.59 7.06 87.66 0.62 23.21 16 13 O -0.63 -36.79 15.42 -3.07 -0.05 -36.84 16 14 C -0.06 -2.28 3.00 -12.76 -0.04 -2.32 16 15 H 0.13 4.35 5.50 -2.39 -0.01 4.33 16 16 C -0.05 -1.80 7.68 29.37 0.23 -1.57 16 17 C -0.13 -4.14 7.21 -20.06 -0.14 -4.28 16 18 C -0.12 -3.98 6.51 -20.08 -0.13 -4.11 16 19 C -0.10 -2.79 10.06 22.37 0.22 -2.56 16 20 C -0.10 -2.17 10.04 22.23 0.22 -1.95 16 21 C -0.11 -2.44 9.82 22.25 0.22 -2.22 16 22 C -0.02 -0.64 6.33 22.42 0.14 -0.50 16 23 Cl -0.08 -1.92 28.96 -2.72 -0.08 -2.00 16 24 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 25 H 0.06 2.59 6.43 -2.39 -0.02 2.57 16 26 H 0.04 1.29 6.08 -2.39 -0.01 1.28 16 27 H 0.05 1.99 6.84 -2.39 -0.02 1.97 16 28 H 0.09 4.16 6.00 -2.39 -0.01 4.14 16 29 H 0.27 12.68 8.31 -92.71 -0.77 11.91 16 30 H 0.08 3.36 7.08 -2.39 -0.02 3.34 16 31 H 0.12 3.29 8.14 -2.38 -0.02 3.27 16 32 H 0.13 3.51 7.95 -2.91 -0.02 3.49 16 33 H 0.17 2.42 8.06 -2.91 -0.02 2.40 16 34 H 0.17 2.66 8.06 -2.91 -0.02 2.64 16 Total: -1.00 -65.38 296.32 5.20 -60.19 By element: Atomic # 1 Polarization: 14.24 SS G_CDS: 1.13 Total: 15.37 kcal Atomic # 6 Polarization: -16.46 SS G_CDS: 3.67 Total: -12.78 kcal Atomic # 7 Polarization: -66.39 SS G_CDS: -1.51 Total: -67.90 kcal Atomic # 8 Polarization: -36.79 SS G_CDS: -0.05 Total: -36.84 kcal Atomic # 14 Polarization: 41.93 SS G_CDS: 2.03 Total: 43.96 kcal Atomic # 17 Polarization: -1.92 SS G_CDS: -0.08 Total: -2.00 kcal Total: -65.38 5.20 -60.19 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000528175156.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.954 kcal (2) G-P(sol) polarization free energy of solvation -65.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.187 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds