Wall clock time and date at job start Wed Apr 15 2020 11:43:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46912 * 1 3 3 C 1.46898 * 110.99351 * 2 1 4 4 C 1.50698 * 109.47406 * 66.04678 * 3 2 1 5 5 H 1.08003 * 120.00060 * 359.97438 * 4 3 2 6 6 C 1.37878 * 120.00506 * 179.97438 * 4 3 2 7 7 N 1.31516 * 119.99613 * 0.02562 * 6 4 3 8 8 Si 1.86794 * 120.00295 * 180.02562 * 6 4 3 9 9 H 1.48499 * 109.47206 * 0.02562 * 8 6 4 10 10 H 1.48501 * 109.47030 * 120.00593 * 8 6 4 11 11 H 1.48504 * 109.47042 * 240.00317 * 8 6 4 12 12 C 1.46898 * 111.00116 * 236.04684 * 2 1 3 13 13 C 1.50698 * 109.47139 * 293.95153 * 12 2 1 14 14 C 1.34171 * 126.91714 * 270.04473 * 13 12 2 15 15 Cl 1.73603 * 124.93346 * 359.95837 * 14 13 12 16 16 O 1.34438 * 110.12599 * 179.97438 * 14 13 12 17 17 C 1.34838 * 110.89851 * 359.97438 * 16 14 13 18 18 C 1.38916 * 133.47668 * 180.02562 * 17 16 14 19 19 C 1.37868 * 119.82216 * 179.97438 * 18 17 16 20 20 C 1.38735 * 120.68900 * 0.02562 * 19 18 17 21 21 C 1.36743 * 120.41209 * 359.97438 * 20 19 18 22 22 C 1.39414 * 119.71302 * 359.97438 * 21 20 19 23 23 H 1.08997 * 109.46563 * 183.95618 * 1 2 3 24 24 H 1.08994 * 109.47172 * 303.95144 * 1 2 3 25 25 H 1.08997 * 109.46832 * 63.95784 * 1 2 3 26 26 H 1.09003 * 109.46730 * 186.04767 * 3 2 1 27 27 H 1.09004 * 109.47490 * 306.04431 * 3 2 1 28 28 H 0.97004 * 120.00203 * 179.97438 * 7 6 4 29 29 H 1.08997 * 109.47320 * 173.94883 * 12 2 1 30 30 H 1.09004 * 109.47134 * 53.95224 * 12 2 1 31 31 H 1.08003 * 120.08639 * 0.02562 * 18 17 16 32 32 H 1.08003 * 119.65389 * 180.27581 * 19 18 17 33 33 H 1.08004 * 119.79110 * 179.97438 * 20 19 18 34 34 H 1.07996 * 120.14518 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6369 2.0472 1.2984 5 1 1.0739 1.5115 2.0485 6 6 2.0274 3.3492 1.5289 7 7 2.7125 4.0017 0.6154 8 14 1.5836 4.1865 3.1386 9 1 0.8165 3.2438 3.9919 10 1 2.8256 4.5932 3.8439 11 1 0.7564 5.3879 2.8601 12 6 1.9956 -0.7659 -1.1376 13 6 1.6371 -2.2204 -0.9728 14 6 2.3603 -3.1630 -0.3494 15 17 3.8962 -2.8948 0.4140 16 8 1.7227 -4.3454 -0.4020 17 6 0.5523 -4.2318 -1.0619 18 6 -0.4553 -5.1326 -1.3831 19 6 -1.5610 -4.7027 -2.0856 20 6 -1.6797 -3.3771 -2.4772 21 6 -0.6992 -2.4744 -2.1711 22 6 0.4257 -2.8904 -1.4604 23 1 -0.3632 -1.0252 0.0709 24 1 -0.3633 0.5739 0.8524 25 1 -0.3633 0.4512 -0.9233 26 1 3.0797 1.3445 -0.1083 27 1 1.5610 1.9274 -0.8309 28 1 2.9870 4.9179 0.7773 29 1 3.0798 -0.6610 -1.1757 30 1 1.5612 -0.3872 -2.0628 31 1 -0.3730 -6.1667 -1.0827 32 1 -2.3448 -5.4044 -2.3300 33 1 -2.5519 -3.0561 -3.0274 34 1 -0.7963 -1.4434 -2.4777 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000611249369.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:12 Heat of formation + Delta-G solvation = 16.454722 kcal Electronic energy + Delta-G solvation = -19061.756744 eV Core-core repulsion = 15986.583430 eV Total energy + Delta-G solvation = -3075.173314 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 279.077 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -43.59472 -38.93942 -38.52813 -37.92701 -35.00666 -33.77297 -31.51936 -30.57277 -29.28815 -28.06248 -25.76085 -24.31138 -23.31454 -22.65852 -20.88169 -18.72707 -18.60466 -17.98068 -17.57980 -16.91182 -16.74454 -16.02463 -15.74864 -15.29619 -15.17476 -14.80830 -14.41250 -14.00233 -13.65124 -13.49451 -13.29529 -13.07100 -13.00182 -12.79864 -12.62160 -12.52269 -12.38142 -12.28447 -11.95337 -11.75759 -11.32344 -10.92550 -10.60802 -9.65530 -9.18621 -9.01912 -8.19648 -6.29075 -0.19798 0.04843 0.33633 1.08499 1.40982 1.42165 1.55486 2.21527 2.41243 2.72362 3.13136 3.35513 3.49725 3.67158 3.79005 4.11560 4.27452 4.36504 4.43003 4.49846 4.56727 4.59982 4.71463 4.84358 5.04485 5.07033 5.17918 5.25990 5.28220 5.38960 5.50190 5.57536 5.65317 6.02432 6.04507 6.30006 6.57262 6.86311 7.40284 8.91523 Molecular weight = 279.08amu Principal moments of inertia in cm(-1) A = 0.020779 B = 0.004876 C = 0.004256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1347.164075 B = 5741.213314 C = 6577.794539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.047 3.953 2 N -0.540 5.540 3 C 0.209 3.791 4 C -0.521 4.521 5 H 0.060 0.940 6 C 0.005 3.995 7 N -0.933 5.933 8 Si 0.967 3.033 9 H -0.265 1.265 10 H -0.279 1.279 11 H -0.277 1.277 12 C 0.125 3.875 13 C -0.131 4.131 14 C 0.064 3.936 15 Cl 0.038 6.962 16 O -0.198 6.198 17 C 0.038 3.962 18 C -0.109 4.109 19 C -0.078 4.078 20 C -0.126 4.126 21 C -0.080 4.080 22 C -0.137 4.137 23 H 0.064 0.936 24 H 0.056 0.944 25 H 0.017 0.983 26 H 0.007 0.993 27 H -0.032 1.032 28 H 0.264 0.736 29 H 0.077 0.923 30 H 0.043 0.957 31 H 0.157 0.843 32 H 0.178 0.822 33 H 0.162 0.838 34 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.681 -18.464 -6.516 21.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 N -0.264 5.264 3 C 0.083 3.917 4 C -0.559 4.559 5 H 0.079 0.921 6 C -0.193 4.193 7 N -0.574 5.574 8 Si 0.792 3.208 9 H -0.190 1.190 10 H -0.205 1.205 11 H -0.203 1.203 12 C -0.003 4.003 13 C -0.134 4.134 14 C -0.011 4.011 15 Cl 0.067 6.933 16 O -0.102 6.102 17 C -0.008 4.008 18 C -0.128 4.128 19 C -0.095 4.095 20 C -0.143 4.143 21 C -0.098 4.098 22 C -0.138 4.138 23 H 0.083 0.917 24 H 0.075 0.925 25 H 0.036 0.964 26 H 0.025 0.975 27 H -0.015 1.015 28 H 0.073 0.927 29 H 0.095 0.905 30 H 0.062 0.938 31 H 0.175 0.825 32 H 0.195 0.805 33 H 0.179 0.821 34 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -7.201 -18.738 -5.939 20.934 hybrid contribution 0.404 1.411 0.137 1.474 sum -6.796 -17.327 -5.802 19.496 Atomic orbital electron populations 1.22177 0.87535 1.00516 0.99887 1.62048 1.08307 1.15357 1.40706 1.19398 0.93866 0.83142 0.95252 1.21452 1.34753 0.97430 1.02268 0.92133 1.25849 0.95009 0.97972 1.00518 1.70084 1.39363 1.11877 1.36042 0.85370 0.78063 0.78231 0.79171 1.18958 1.20465 1.20269 1.20333 1.00110 0.87224 0.92640 1.20755 0.94450 0.95468 1.02737 1.22035 0.91695 0.84621 1.02716 1.98442 1.21343 1.94036 1.79470 1.83812 1.29888 1.31797 1.64654 1.20031 0.86786 0.96033 0.97980 1.20398 0.91141 0.99413 1.01805 1.21461 0.96511 0.96542 0.95024 1.21219 0.99298 0.93182 1.00641 1.20540 0.91808 1.00939 0.96536 1.19810 0.96538 0.93235 1.04228 0.91697 0.92468 0.96443 0.97490 1.01451 0.92677 0.90479 0.93849 0.82518 0.80498 0.82081 0.85555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.89 9.05 127.69 1.16 3.05 16 2 N -0.54 -24.18 4.74 -931.64 -4.42 -28.60 16 3 C 0.21 11.26 4.72 85.56 0.40 11.66 16 4 C -0.52 -29.80 8.46 25.60 0.22 -29.58 16 5 H 0.06 3.44 7.12 -2.91 -0.02 3.42 16 6 C 0.00 0.26 5.46 84.65 0.46 0.72 16 7 N -0.93 -56.15 13.29 21.45 0.28 -55.86 16 8 Si 0.97 44.63 29.54 68.60 2.03 46.65 16 9 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 10 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 11 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 12 C 0.12 4.77 5.30 85.56 0.45 5.22 16 13 C -0.13 -4.50 5.13 -18.56 -0.10 -4.59 16 14 C 0.06 2.13 7.83 66.89 0.52 2.65 16 15 Cl 0.04 1.20 28.80 -2.72 -0.08 1.12 16 16 O -0.20 -6.20 10.58 -9.13 -0.10 -6.30 16 17 C 0.04 1.06 7.42 22.98 0.17 1.23 16 18 C -0.11 -2.08 10.07 22.34 0.23 -1.86 16 19 C -0.08 -1.11 10.01 22.30 0.22 -0.89 16 20 C -0.13 -2.11 9.98 22.04 0.22 -1.89 16 21 C -0.08 -1.94 9.42 22.20 0.21 -1.73 16 22 C -0.14 -4.07 5.36 -20.21 -0.11 -4.18 16 23 H 0.06 2.36 5.92 -2.39 -0.01 2.34 16 24 H 0.06 2.47 6.76 -2.39 -0.02 2.45 16 25 H 0.02 0.66 8.14 -2.39 -0.02 0.64 16 26 H 0.01 0.40 7.93 -2.39 -0.02 0.38 16 27 H -0.03 -1.85 8.12 -2.39 -0.02 -1.87 16 28 H 0.26 14.91 8.31 -92.71 -0.77 14.14 16 29 H 0.08 2.99 7.66 -2.39 -0.02 2.97 16 30 H 0.04 1.60 8.12 -2.38 -0.02 1.58 16 31 H 0.16 2.13 8.06 -2.91 -0.02 2.10 16 32 H 0.18 1.06 8.06 -2.91 -0.02 1.03 16 33 H 0.16 1.67 8.06 -2.91 -0.02 1.65 16 34 H 0.13 3.02 8.06 -2.91 -0.02 3.00 16 Total: -1.00 -66.91 306.80 2.89 -64.03 By element: Atomic # 1 Polarization: -1.97 SS G_CDS: 1.11 Total: -0.86 kcal Atomic # 6 Polarization: -24.24 SS G_CDS: 4.06 Total: -20.18 kcal Atomic # 7 Polarization: -80.32 SS G_CDS: -4.14 Total: -84.46 kcal Atomic # 8 Polarization: -6.20 SS G_CDS: -0.10 Total: -6.30 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 2.03 Total: 46.65 kcal Atomic # 17 Polarization: 1.20 SS G_CDS: -0.08 Total: 1.12 kcal Total: -66.91 2.89 -64.03 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611249369.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.481 kcal (2) G-P(sol) polarization free energy of solvation -66.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.026 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds