Wall clock time and date at job start Wed Apr 15 2020 11:43:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46503 * 119.99923 * 2 1 4 4 C 1.50702 * 109.47110 * 270.00034 * 3 2 1 5 5 C 1.32825 * 124.72272 * 90.00286 * 4 3 2 6 6 C 1.44400 * 113.07203 * 180.28822 * 5 4 3 7 7 C 1.43201 * 123.45140 * 179.72571 * 6 5 4 8 8 N 6.67120 * 84.64036 * 308.62861 * 2 1 3 9 9 C 1.35955 * 113.09789 * 359.50679 * 6 5 4 10 10 S 1.70449 * 110.83078 * 0.47753 * 9 6 5 11 11 C 1.34776 * 120.00006 * 180.02562 * 2 1 3 12 12 O 1.21591 * 120.00157 * 180.02562 * 11 2 1 13 13 N 1.34775 * 120.00079 * 359.97438 * 11 2 1 14 14 C 1.46497 * 120.00251 * 180.02562 * 13 11 2 15 15 C 1.50697 * 109.47316 * 180.02562 * 14 13 11 16 16 H 1.08009 * 120.00073 * 359.97438 * 15 14 13 17 17 C 1.37875 * 120.00124 * 180.02562 * 15 14 13 18 18 N 1.31514 * 119.99932 * 179.97438 * 17 15 14 19 19 Si 1.86795 * 119.99911 * 359.97438 * 17 15 14 20 20 H 1.48505 * 109.47029 * 90.00488 * 19 17 15 21 21 H 1.48504 * 109.47283 * 210.00025 * 19 17 15 22 22 H 1.48494 * 109.47293 * 330.00029 * 19 17 15 23 23 H 1.08997 * 109.46915 * 89.99905 * 1 2 3 24 24 H 1.08996 * 109.46919 * 209.99904 * 1 2 3 25 25 H 1.09000 * 109.46740 * 330.00452 * 1 2 3 26 26 H 1.09003 * 109.46725 * 150.00389 * 3 2 1 27 27 H 1.08998 * 109.47086 * 29.99778 * 3 2 1 28 28 H 1.08002 * 123.46002 * 0.02562 * 5 4 3 29 29 H 1.08000 * 124.58289 * 180.19639 * 9 6 5 30 30 H 0.97003 * 120.00152 * 0.02562 * 13 11 2 31 31 H 1.09002 * 109.46523 * 299.99899 * 14 13 11 32 32 H 1.08998 * 109.47318 * 60.00079 * 14 13 11 33 33 H 0.97004 * 120.00038 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4487 1.7038 -1.4208 5 6 1.6293 2.4681 -2.1341 6 6 2.1144 2.7251 -3.4697 7 6 1.4048 3.5176 -4.4284 8 7 0.8419 4.1464 -5.1888 9 6 3.3161 2.1415 -3.7222 10 16 3.8644 1.2705 -2.3635 11 6 2.1389 -1.1672 -0.0005 12 8 3.3548 -1.1672 -0.0001 13 7 1.4651 -2.3344 -0.0005 14 6 2.1975 -3.6031 -0.0005 15 6 1.2182 -4.7485 -0.0012 16 1 0.1563 -4.5512 -0.0011 17 6 1.6778 -6.0484 -0.0007 18 7 0.8232 -7.0480 -0.0008 19 14 3.5143 -6.3898 -0.0001 20 1 4.0005 -6.4800 1.4002 21 1 3.7797 -7.6725 -0.6998 22 1 4.2228 -5.2884 -0.7001 23 1 -0.3633 0.0000 -1.0276 24 1 -0.3633 -0.8900 0.5138 25 1 -0.3633 0.8900 0.5138 26 1 3.1500 1.1383 0.5138 27 1 1.6084 2.0284 0.5138 28 1 0.6943 2.8539 -1.7555 29 1 3.8489 2.2157 -4.6587 30 1 0.4950 -2.3344 -0.0005 31 1 2.8241 -3.6608 -0.8906 32 1 2.8242 -3.6609 0.8894 33 1 1.1465 -7.9626 -0.0001 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000894484212.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:16 Heat of formation + Delta-G solvation = 39.627446 kcal Electronic energy + Delta-G solvation = -18448.896015 eV Core-core repulsion = 15409.064003 eV Total energy + Delta-G solvation = -3039.832012 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 279.078 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -39.77723 -38.36008 -36.33456 -35.22662 -34.38960 -32.45889 -31.12508 -28.00537 -27.31417 -25.57983 -24.74466 -22.05521 -20.57381 -19.55530 -18.20822 -17.98392 -17.05116 -16.43186 -16.08590 -15.49126 -14.59370 -14.36329 -14.19757 -13.83477 -13.69945 -13.55466 -13.34154 -12.98749 -12.90412 -12.62808 -12.35848 -12.30921 -12.23253 -12.07894 -11.66802 -11.00268 -10.87955 -10.77652 -9.98147 -9.69125 -9.48044 -9.13308 -8.79864 -8.68241 -8.56390 -8.05159 -6.22011 -4.24170 0.52592 1.34118 1.66132 1.76991 2.52912 3.08857 3.26651 3.31010 3.34390 3.41732 3.65355 3.88228 4.32848 4.51608 4.55369 4.84112 5.05876 5.12493 5.13468 5.13846 5.40760 5.50980 5.66450 5.72339 5.77006 6.01037 6.49959 6.72828 7.09357 7.18691 7.30956 7.32412 7.44676 8.22564 8.61251 8.77166 9.10937 9.38766 10.89962 Molecular weight = 279.08amu Principal moments of inertia in cm(-1) A = 0.024278 B = 0.003932 C = 0.003840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1153.049373 B = 7119.879885 C = 7289.694054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.637 5.637 3 C 0.204 3.796 4 C -0.212 4.212 5 C -0.093 4.093 6 C -0.063 4.063 7 C 0.280 3.720 8 N -0.429 5.429 9 C -0.211 4.211 10 S 0.268 5.732 11 C 0.696 3.304 12 O -0.597 6.597 13 N -0.720 5.720 14 C 0.238 3.762 15 C -0.543 4.543 16 H 0.078 0.922 17 C 0.078 3.922 18 N -0.893 5.893 19 Si 0.877 3.123 20 H -0.273 1.273 21 H -0.284 1.284 22 H -0.260 1.260 23 H 0.053 0.947 24 H 0.073 0.927 25 H 0.070 0.930 26 H 0.098 0.902 27 H 0.096 0.904 28 H 0.150 0.850 29 H 0.172 0.828 30 H 0.393 0.607 31 H 0.024 0.976 32 H 0.019 0.981 33 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.759 18.981 -1.444 19.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.375 5.375 3 C 0.078 3.922 4 C -0.331 4.331 5 C -0.124 4.124 6 C -0.082 4.082 7 C -0.037 4.037 8 N -0.106 5.106 9 C -0.353 4.353 10 S 0.537 5.463 11 C 0.397 3.603 12 O -0.476 6.476 13 N -0.373 5.373 14 C 0.115 3.885 15 C -0.581 4.581 16 H 0.096 0.904 17 C -0.126 4.126 18 N -0.530 5.530 19 Si 0.703 3.297 20 H -0.199 1.199 21 H -0.210 1.210 22 H -0.184 1.184 23 H 0.072 0.928 24 H 0.091 0.909 25 H 0.089 0.911 26 H 0.116 0.884 27 H 0.114 0.886 28 H 0.168 0.832 29 H 0.190 0.810 30 H 0.228 0.772 31 H 0.042 0.958 32 H 0.037 0.963 33 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 4.060 18.785 -2.286 19.354 hybrid contribution -0.847 0.259 -0.263 0.924 sum 3.212 19.044 -2.549 19.481 Atomic orbital electron populations 1.21724 0.79826 1.03027 1.01760 1.47091 1.06241 1.04505 1.79708 1.19642 0.98933 0.84814 0.88761 1.25052 1.00126 1.04949 1.02987 1.20898 1.00609 0.99987 0.90887 1.16180 0.95343 1.04231 0.92471 1.25112 0.93062 0.92744 0.92750 1.81253 1.08935 1.10601 1.09763 1.25778 0.99909 1.03048 1.06578 1.83895 1.19003 1.43885 0.99534 1.16075 0.85510 0.80503 0.78219 1.90853 1.11531 1.86292 1.58926 1.45564 1.10001 1.04968 1.76758 1.19371 0.92884 0.79558 0.96670 1.21082 0.94354 0.89376 1.53285 0.90383 1.24781 0.98172 0.95777 0.93877 1.69881 1.34452 0.99215 1.49475 0.86812 0.85480 0.78326 0.79047 1.19861 1.20964 1.18379 0.92841 0.90891 0.91125 0.88414 0.88628 0.83207 0.81022 0.77189 0.95843 0.96316 0.92263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.78 10.25 59.85 0.61 1.39 16 2 N -0.64 -8.25 2.86 -188.74 -0.54 -8.79 16 3 C 0.20 2.09 5.91 -5.19 -0.03 2.06 16 4 C -0.21 -2.14 6.03 -36.17 -0.22 -2.36 16 5 C -0.09 -0.84 10.20 -39.02 -0.40 -1.24 16 6 C -0.06 -0.62 5.84 -106.37 -0.62 -1.24 16 7 C 0.28 3.20 15.62 -22.47 -0.35 2.85 16 8 N -0.43 -5.78 18.54 41.84 0.78 -5.01 16 9 C -0.21 -1.93 10.78 29.91 0.32 -1.61 16 10 S 0.27 2.83 23.00 -107.50 -2.47 0.35 16 11 C 0.70 12.61 8.28 -86.92 -0.72 11.89 16 12 O -0.60 -12.53 15.92 5.29 0.08 -12.45 16 13 N -0.72 -14.18 5.41 -66.42 -0.36 -14.54 16 14 C 0.24 5.70 4.50 -5.20 -0.02 5.68 16 15 C -0.54 -14.60 9.83 -34.44 -0.34 -14.94 16 16 H 0.08 2.19 7.84 -52.48 -0.41 1.78 16 17 C 0.08 2.16 5.47 -17.82 -0.10 2.06 16 18 N -0.89 -26.17 13.96 55.43 0.77 -25.39 16 19 Si 0.88 21.04 27.47 -169.99 -4.67 16.37 16 20 H -0.27 -6.46 7.11 56.52 0.40 -6.05 16 21 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 22 H -0.26 -6.16 6.54 56.52 0.37 -5.79 16 23 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 24 H 0.07 0.75 6.36 -51.93 -0.33 0.42 16 25 H 0.07 0.48 7.89 -51.93 -0.41 0.07 16 26 H 0.10 1.11 7.42 -51.93 -0.39 0.73 16 27 H 0.10 0.65 7.89 -51.93 -0.41 0.24 16 28 H 0.15 1.05 8.06 -52.49 -0.42 0.63 16 29 H 0.17 1.21 8.06 -52.49 -0.42 0.78 16 30 H 0.39 6.89 6.05 -40.82 -0.25 6.64 16 31 H 0.02 0.60 7.20 -51.93 -0.37 0.22 16 32 H 0.02 0.47 7.57 -51.93 -0.39 0.08 16 33 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 LS Contribution 311.41 15.07 4.69 4.69 Total: -1.00 -32.73 311.41 -6.97 -39.70 By element: Atomic # 1 Polarization: 3.92 SS G_CDS: -3.40 Total: 0.52 kcal Atomic # 6 Polarization: 6.40 SS G_CDS: -1.86 Total: 4.54 kcal Atomic # 7 Polarization: -54.38 SS G_CDS: 0.65 Total: -53.73 kcal Atomic # 8 Polarization: -12.53 SS G_CDS: 0.08 Total: -12.45 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -4.67 Total: 16.37 kcal Atomic # 16 Polarization: 2.83 SS G_CDS: -2.47 Total: 0.35 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -32.73 -6.97 -39.70 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894484212.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.325 kcal (2) G-P(sol) polarization free energy of solvation -32.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.697 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds