Wall clock time and date at job start Wed Apr 15 2020 11:43:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46503 * 119.99923 * 2 1 4 4 C 1.50702 * 109.47110 * 270.00034 * 3 2 1 5 5 C 1.32825 * 124.72272 * 90.00286 * 4 3 2 6 6 C 1.44400 * 113.07203 * 180.28822 * 5 4 3 7 7 C 1.43201 * 123.45140 * 179.72571 * 6 5 4 8 8 N 6.67120 * 84.64036 * 308.62861 * 2 1 3 9 9 C 1.35955 * 113.09789 * 359.50679 * 6 5 4 10 10 S 1.70449 * 110.83078 * 0.47753 * 9 6 5 11 11 C 1.34776 * 120.00006 * 180.02562 * 2 1 3 12 12 O 1.21591 * 120.00157 * 180.02562 * 11 2 1 13 13 N 1.34775 * 120.00079 * 359.97438 * 11 2 1 14 14 C 1.46497 * 120.00251 * 180.02562 * 13 11 2 15 15 C 1.50697 * 109.47316 * 180.02562 * 14 13 11 16 16 H 1.08009 * 120.00073 * 359.97438 * 15 14 13 17 17 C 1.37875 * 120.00124 * 180.02562 * 15 14 13 18 18 N 1.31514 * 119.99932 * 179.97438 * 17 15 14 19 19 Si 1.86795 * 119.99911 * 359.97438 * 17 15 14 20 20 H 1.48505 * 109.47029 * 90.00488 * 19 17 15 21 21 H 1.48504 * 109.47283 * 210.00025 * 19 17 15 22 22 H 1.48494 * 109.47293 * 330.00029 * 19 17 15 23 23 H 1.08997 * 109.46915 * 89.99905 * 1 2 3 24 24 H 1.08996 * 109.46919 * 209.99904 * 1 2 3 25 25 H 1.09000 * 109.46740 * 330.00452 * 1 2 3 26 26 H 1.09003 * 109.46725 * 150.00389 * 3 2 1 27 27 H 1.08998 * 109.47086 * 29.99778 * 3 2 1 28 28 H 1.08002 * 123.46002 * 0.02562 * 5 4 3 29 29 H 1.08000 * 124.58289 * 180.19639 * 9 6 5 30 30 H 0.97003 * 120.00152 * 0.02562 * 13 11 2 31 31 H 1.09002 * 109.46523 * 299.99899 * 14 13 11 32 32 H 1.08998 * 109.47318 * 60.00079 * 14 13 11 33 33 H 0.97004 * 120.00038 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4487 1.7038 -1.4208 5 6 1.6293 2.4681 -2.1341 6 6 2.1144 2.7251 -3.4697 7 6 1.4048 3.5176 -4.4284 8 7 0.8419 4.1464 -5.1888 9 6 3.3161 2.1415 -3.7222 10 16 3.8644 1.2705 -2.3635 11 6 2.1389 -1.1672 -0.0005 12 8 3.3548 -1.1672 -0.0001 13 7 1.4651 -2.3344 -0.0005 14 6 2.1975 -3.6031 -0.0005 15 6 1.2182 -4.7485 -0.0012 16 1 0.1563 -4.5512 -0.0011 17 6 1.6778 -6.0484 -0.0007 18 7 0.8232 -7.0480 -0.0008 19 14 3.5143 -6.3898 -0.0001 20 1 4.0005 -6.4800 1.4002 21 1 3.7797 -7.6725 -0.6998 22 1 4.2228 -5.2884 -0.7001 23 1 -0.3633 0.0000 -1.0276 24 1 -0.3633 -0.8900 0.5138 25 1 -0.3633 0.8900 0.5138 26 1 3.1500 1.1383 0.5138 27 1 1.6084 2.0284 0.5138 28 1 0.6943 2.8539 -1.7555 29 1 3.8489 2.2157 -4.6587 30 1 0.4950 -2.3344 -0.0005 31 1 2.8241 -3.6608 -0.8906 32 1 2.8242 -3.6609 0.8894 33 1 1.1465 -7.9626 -0.0001 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000894484212.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:15 Heat of formation + Delta-G solvation = 18.079293 kcal Electronic energy + Delta-G solvation = -18449.830413 eV Core-core repulsion = 15409.064003 eV Total energy + Delta-G solvation = -3040.766410 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 279.078 amu Computer time = 1.53 seconds Orbital eigenvalues (eV) -41.06346 -39.21596 -37.33476 -36.34592 -36.05471 -34.38645 -32.10717 -29.75577 -28.16592 -26.57605 -25.70716 -23.85314 -21.55202 -20.89815 -19.37538 -18.99555 -18.25963 -17.87892 -17.35706 -16.68945 -16.34290 -15.41228 -15.32514 -15.01653 -14.80853 -14.67469 -14.52200 -14.38272 -13.93965 -13.85347 -13.64454 -13.39841 -13.17453 -12.99876 -12.95765 -12.65892 -12.46200 -11.88560 -11.64940 -11.59679 -11.12904 -10.87804 -10.05167 -9.89342 -9.46853 -9.37423 -8.36179 -6.42754 -0.24615 0.56650 0.87489 1.00259 1.37030 1.39159 1.52115 1.65325 1.96769 2.27202 2.32382 2.45122 2.99894 3.02805 3.28030 3.79178 4.12610 4.23342 4.40174 4.43848 4.68514 4.74920 4.81403 4.93360 4.99955 5.03086 5.12377 5.26290 5.30892 5.61560 5.62802 5.96529 6.24015 6.43683 6.59216 7.15316 7.24437 7.71590 8.78603 Molecular weight = 279.08amu Principal moments of inertia in cm(-1) A = 0.024278 B = 0.003932 C = 0.003840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1153.049373 B = 7119.879885 C = 7289.694054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.627 5.627 3 C 0.201 3.799 4 C -0.222 4.222 5 C -0.075 4.075 6 C -0.076 4.076 7 C 0.302 3.698 8 N -0.469 5.469 9 C -0.193 4.193 10 S 0.231 5.769 11 C 0.692 3.308 12 O -0.630 6.630 13 N -0.725 5.725 14 C 0.253 3.747 15 C -0.544 4.544 16 H 0.056 0.944 17 C 0.026 3.974 18 N -0.933 5.933 19 Si 0.938 3.062 20 H -0.265 1.265 21 H -0.276 1.276 22 H -0.257 1.257 23 H 0.059 0.941 24 H 0.064 0.936 25 H 0.111 0.889 26 H 0.082 0.918 27 H 0.140 0.860 28 H 0.177 0.823 29 H 0.191 0.809 30 H 0.402 0.598 31 H 0.010 0.990 32 H 0.010 0.990 33 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.827 20.626 -1.210 20.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.364 5.364 3 C 0.077 3.923 4 C -0.341 4.341 5 C -0.106 4.106 6 C -0.095 4.095 7 C -0.014 4.014 8 N -0.146 5.146 9 C -0.335 4.335 10 S 0.499 5.501 11 C 0.394 3.606 12 O -0.511 6.511 13 N -0.380 5.380 14 C 0.128 3.872 15 C -0.582 4.582 16 H 0.075 0.925 17 C -0.174 4.174 18 N -0.572 5.572 19 Si 0.761 3.239 20 H -0.190 1.190 21 H -0.201 1.201 22 H -0.181 1.181 23 H 0.078 0.922 24 H 0.083 0.917 25 H 0.129 0.871 26 H 0.101 0.899 27 H 0.158 0.842 28 H 0.194 0.806 29 H 0.208 0.792 30 H 0.239 0.761 31 H 0.028 0.972 32 H 0.028 0.972 33 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 4.087 20.492 -2.048 20.996 hybrid contribution -0.930 -0.167 -0.343 1.005 sum 3.157 20.325 -2.391 20.707 Atomic orbital electron populations 1.21983 0.77546 1.04656 1.02692 1.47133 1.07657 1.03616 1.77959 1.19919 0.98948 0.84292 0.89175 1.24978 1.00079 1.06007 1.03006 1.21121 1.00943 0.98539 0.89990 1.16280 0.95667 1.04762 0.92766 1.25203 0.92180 0.91914 0.92118 1.81282 1.10280 1.12063 1.10955 1.25955 0.99456 1.01411 1.06636 1.84137 1.20398 1.44734 1.00866 1.16221 0.85199 0.81311 0.77916 1.90826 1.13093 1.86995 1.60221 1.45307 1.10355 1.04476 1.77817 1.18911 0.92085 0.80677 0.95490 1.21292 0.94001 0.90534 1.52402 0.92537 1.25592 1.02499 0.95713 0.93626 1.69988 1.36522 0.99792 1.50923 0.85849 0.80208 0.78339 0.79459 1.18983 1.20112 1.18116 0.92216 0.91746 0.87084 0.89922 0.84206 0.80558 0.79164 0.76097 0.97170 0.97211 0.91932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.19 10.25 127.77 1.31 2.50 16 2 N -0.63 -14.74 2.86 -869.30 -2.48 -17.22 16 3 C 0.20 3.53 5.91 85.63 0.51 4.04 16 4 C -0.22 -3.93 6.03 24.51 0.15 -3.78 16 5 C -0.08 -1.11 10.20 22.66 0.23 -0.88 16 6 C -0.08 -1.31 5.84 -21.00 -0.12 -1.43 16 7 C 0.30 6.30 15.62 88.33 1.38 7.68 16 8 N -0.47 -12.01 18.54 19.00 0.35 -11.66 16 9 C -0.19 -3.15 10.78 67.29 0.73 -2.42 16 10 S 0.23 4.59 23.00 -56.49 -1.30 3.29 16 11 C 0.69 24.43 8.28 179.06 1.48 25.91 16 12 O -0.63 -26.23 15.92 -4.00 -0.06 -26.29 16 13 N -0.72 -28.29 5.41 -482.30 -2.61 -30.90 16 14 C 0.25 12.14 4.50 85.63 0.38 12.53 16 15 C -0.54 -29.61 9.83 25.60 0.25 -29.36 16 16 H 0.06 3.24 7.84 -2.91 -0.02 3.22 16 17 C 0.03 1.44 5.47 84.65 0.46 1.90 16 18 N -0.93 -55.28 13.96 21.45 0.30 -54.98 16 19 Si 0.94 43.38 27.47 68.60 1.88 45.27 16 20 H -0.26 -11.84 7.11 99.48 0.71 -11.13 16 21 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 22 H -0.26 -11.71 6.54 99.48 0.65 -11.06 16 23 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 24 H 0.06 1.18 6.36 -2.39 -0.02 1.16 16 25 H 0.11 0.94 7.89 -2.39 -0.02 0.92 16 26 H 0.08 1.75 7.42 -2.39 -0.02 1.73 16 27 H 0.14 1.23 7.89 -2.39 -0.02 1.21 16 28 H 0.18 1.64 8.06 -2.91 -0.02 1.62 16 29 H 0.19 2.27 8.06 -2.91 -0.02 2.24 16 30 H 0.40 13.94 6.05 -92.71 -0.56 13.38 16 31 H 0.01 0.53 7.20 -2.39 -0.02 0.51 16 32 H 0.01 0.50 7.57 -2.39 -0.02 0.48 16 33 H 0.27 15.00 8.31 -92.70 -0.77 14.23 16 Total: -1.00 -71.37 311.41 3.37 -67.99 By element: Atomic # 1 Polarization: 7.28 SS G_CDS: 0.54 Total: 7.81 kcal Atomic # 6 Polarization: 9.93 SS G_CDS: 6.76 Total: 16.69 kcal Atomic # 7 Polarization: -110.32 SS G_CDS: -4.44 Total: -114.76 kcal Atomic # 8 Polarization: -26.23 SS G_CDS: -0.06 Total: -26.29 kcal Atomic # 14 Polarization: 43.38 SS G_CDS: 1.88 Total: 45.27 kcal Atomic # 16 Polarization: 4.59 SS G_CDS: -1.30 Total: 3.29 kcal Total: -71.37 3.37 -67.99 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894484212.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.074 kcal (2) G-P(sol) polarization free energy of solvation -71.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.995 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.53 seconds