Wall clock time and date at job start Wed Apr 15 2020 11:43:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46908 * 1 3 3 C 1.46905 * 110.99729 * 2 1 4 4 C 1.53002 * 109.46877 * 66.04676 * 3 2 1 5 5 C 1.52998 * 109.46881 * 179.97438 * 4 3 2 6 6 S 1.80995 * 109.47306 * 179.97438 * 5 4 3 7 7 C 1.76195 * 100.00304 * 179.97438 * 6 5 4 8 8 H 1.07994 * 120.00061 * 0.02562 * 7 6 5 9 9 C 1.38805 * 120.00006 * 179.97438 * 7 6 5 10 10 N 1.31631 * 120.00021 * 0.02562 * 9 7 6 11 11 Si 1.86805 * 119.99768 * 180.02562 * 9 7 6 12 12 H 1.48496 * 109.46890 * 90.00527 * 11 9 7 13 13 H 1.48501 * 109.46920 * 209.99997 * 11 9 7 14 14 H 1.48498 * 109.47316 * 330.00302 * 11 9 7 15 15 C 1.46897 * 110.99930 * 236.05085 * 2 1 3 16 16 C 1.55889 * 110.81889 * 186.92352 * 15 2 1 17 17 S 1.83088 * 82.43655 * 142.73678 * 16 15 2 18 18 O 1.42105 * 111.36429 * 90.42226 * 17 16 15 19 19 O 1.42107 * 111.36052 * 229.36660 * 17 16 15 20 20 C 1.56631 * 110.84823 * 300.54510 * 15 2 1 21 21 H 1.09000 * 109.46835 * 178.29028 * 1 2 3 22 22 H 1.08998 * 109.46808 * 298.28670 * 1 2 3 23 23 H 1.08992 * 109.47012 * 58.29094 * 1 2 3 24 24 H 1.08998 * 109.46932 * 186.04860 * 3 2 1 25 25 H 1.08999 * 109.47191 * 306.04869 * 3 2 1 26 26 H 1.09002 * 109.47008 * 299.99863 * 4 3 2 27 27 H 1.08999 * 109.47052 * 60.00108 * 4 3 2 28 28 H 1.09002 * 109.47253 * 299.99793 * 5 4 3 29 29 H 1.08999 * 109.47123 * 60.00232 * 5 4 3 30 30 H 0.97003 * 119.99963 * 179.97438 * 10 9 7 31 31 H 1.08994 * 110.40089 * 63.74684 * 15 2 1 32 32 H 1.08993 * 114.38243 * 29.34368 * 16 15 2 33 33 H 1.09000 * 114.37806 * 256.12863 * 16 15 2 34 34 H 1.09002 * 114.54226 * 103.95909 * 20 15 2 35 35 H 1.09000 * 114.37742 * 330.57611 * 20 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.6314 2.0574 1.3183 5 6 2.1802 3.4856 1.3186 6 16 1.7490 4.2974 2.8777 7 6 2.4830 5.8772 2.6135 8 1 3.0026 6.0835 1.6895 9 6 2.3926 6.8571 3.5925 10 7 1.7588 6.6058 4.7185 11 14 3.1702 8.5322 3.3119 12 1 2.1824 9.4349 2.6682 13 1 3.5905 9.1072 4.6150 14 1 4.3558 8.3861 2.4298 15 6 1.9955 -0.7659 -1.1376 16 6 3.5445 -0.9110 -1.0386 17 16 3.1894 -2.5746 -1.7157 18 8 3.2215 -2.5729 -3.1364 19 8 3.8373 -3.5896 -0.9613 20 6 1.5008 -2.2511 -1.0865 21 1 -0.3633 -1.0272 -0.0307 22 1 -0.3633 0.4870 0.9049 23 1 -0.3633 0.5401 -0.8742 24 1 3.0797 1.3445 -0.1083 25 1 1.5611 1.9274 -0.8309 26 1 0.5471 2.0844 1.4265 27 1 2.0658 1.5015 2.1492 28 1 3.2645 3.4583 1.2106 29 1 1.7462 4.0418 0.4877 30 1 1.6959 7.2905 5.4028 31 1 1.7098 -0.2944 -2.0779 32 1 3.9320 -0.9131 -0.0199 33 1 4.1013 -0.2602 -1.7128 34 1 0.7046 -2.4877 -1.7923 35 1 1.3152 -2.6291 -0.0811 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000931241640.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:18 Heat of formation + Delta-G solvation = -49.847798 kcal Electronic energy + Delta-G solvation = -17273.525263 eV Core-core repulsion = 14332.964513 eV Total energy + Delta-G solvation = -2940.560750 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 279.075 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -38.85526 -37.48340 -36.32932 -34.57737 -32.46609 -31.81912 -28.45108 -26.44299 -25.66163 -24.51742 -21.14711 -20.55195 -19.12137 -17.57629 -17.13371 -16.83863 -16.78779 -15.67480 -15.19734 -14.82972 -14.71544 -14.52521 -13.95387 -13.70777 -13.43751 -12.94559 -12.51719 -12.47459 -12.42266 -12.39986 -12.15662 -11.87765 -11.64366 -11.38135 -11.09207 -10.86085 -10.77969 -10.72265 -10.56663 -10.36727 -9.57749 -9.08700 -8.67167 -8.34117 -6.56306 -6.25683 -3.96262 -0.34509 1.91771 3.07948 3.18812 3.19868 3.26878 3.37790 3.55800 3.63709 3.71762 3.94129 4.19759 4.53755 4.73459 4.94944 5.05826 5.10352 5.13310 5.26267 5.32307 5.33628 5.43479 5.52256 5.63400 5.74139 5.84017 5.98330 6.25936 6.49202 6.62436 6.74612 6.81709 7.57603 8.33598 9.20663 10.82479 Molecular weight = 279.07amu Principal moments of inertia in cm(-1) A = 0.042025 B = 0.002899 C = 0.002816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 666.116393 B = 9657.514575 C = 9940.322197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 N -0.515 5.515 3 C 0.053 3.947 4 C -0.094 4.094 5 C -0.114 4.114 6 S -0.131 6.131 7 C -0.517 4.517 8 H 0.072 0.928 9 C 0.071 3.929 10 N -0.869 5.869 11 Si 0.918 3.082 12 H -0.277 1.277 13 H -0.282 1.282 14 H -0.272 1.272 15 C 0.034 3.966 16 C -0.557 4.557 17 S 2.378 3.622 18 O -0.928 6.928 19 O -0.934 6.934 20 C -0.559 4.559 21 H 0.071 0.929 22 H 0.082 0.918 23 H 0.028 0.972 24 H 0.080 0.920 25 H 0.036 0.964 26 H 0.066 0.934 27 H 0.075 0.925 28 H 0.060 0.940 29 H 0.058 0.942 30 H 0.267 0.733 31 H 0.083 0.917 32 H 0.159 0.841 33 H 0.143 0.857 34 H 0.141 0.859 35 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.688 -16.788 -12.607 21.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 N -0.239 5.239 3 C -0.076 4.076 4 C -0.133 4.133 5 C -0.263 4.263 6 S 0.097 5.903 7 C -0.666 4.666 8 H 0.090 0.910 9 C -0.138 4.138 10 N -0.505 5.505 11 Si 0.745 3.255 12 H -0.203 1.203 13 H -0.207 1.207 14 H -0.197 1.197 15 C -0.079 4.079 16 C -0.687 4.687 17 S 2.561 3.439 18 O -0.925 6.925 19 O -0.931 6.931 20 C -0.688 4.688 21 H 0.090 0.910 22 H 0.100 0.900 23 H 0.047 0.953 24 H 0.098 0.902 25 H 0.055 0.945 26 H 0.085 0.915 27 H 0.094 0.906 28 H 0.079 0.921 29 H 0.076 0.924 30 H 0.077 0.923 31 H 0.101 0.899 32 H 0.177 0.823 33 H 0.161 0.839 34 H 0.160 0.840 35 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -0.602 -18.170 -11.652 21.594 hybrid contribution 0.228 2.956 -1.474 3.311 sum -0.374 -15.215 -13.126 20.098 Atomic orbital electron populations 1.22537 0.86611 1.02229 1.01933 1.62269 1.08528 1.14750 1.38391 1.22330 1.00574 0.86340 0.98333 1.21282 1.01430 0.94174 0.96371 1.23232 1.02316 0.97409 1.03328 1.84634 1.74266 1.13379 1.18000 1.22687 1.40580 0.97512 1.05780 0.90989 1.25018 0.95209 0.99043 0.94509 1.70020 1.39996 1.34344 1.06139 0.86164 0.79379 0.82169 0.77810 1.20285 1.20724 1.19678 1.23824 0.92513 0.94678 0.96895 1.30996 0.99373 1.23708 1.14582 1.10107 0.79984 0.77980 0.75838 1.93670 1.85506 1.86780 1.26526 1.93603 1.72215 1.54991 1.72242 1.31112 1.21982 1.01719 1.14024 0.91022 0.89956 0.95323 0.90177 0.94548 0.91519 0.90595 0.92092 0.92372 0.92275 0.89921 0.82282 0.83872 0.84023 0.82488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 47. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.14 9.12 60.07 0.55 0.69 16 2 N -0.52 -5.19 4.67 -273.09 -1.28 -6.46 16 3 C 0.05 0.63 4.84 -3.82 -0.02 0.61 16 4 C -0.09 -1.43 5.14 -26.73 -0.14 -1.57 16 5 C -0.11 -2.21 5.67 37.16 0.21 -1.99 16 6 S -0.13 -3.37 21.44 -107.50 -2.30 -5.68 16 7 C -0.52 -14.69 9.50 30.94 0.29 -14.40 16 8 H 0.07 1.98 7.80 -52.49 -0.41 1.57 16 9 C 0.07 2.01 5.49 -17.43 -0.10 1.91 16 10 N -0.87 -25.79 13.22 55.49 0.73 -25.06 16 11 Si 0.92 21.34 29.55 -169.99 -5.02 16.31 16 12 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 13 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 14 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 15 C 0.03 0.25 2.52 -64.21 -0.16 0.09 16 16 C -0.56 -3.63 7.38 38.70 0.29 -3.35 16 17 S 2.38 16.63 6.80 -107.50 -0.73 15.90 16 18 O -0.93 -9.46 18.18 -57.47 -1.04 -10.51 16 19 O -0.93 -10.08 18.18 -57.47 -1.04 -11.13 16 20 C -0.56 -3.07 7.32 39.12 0.29 -2.79 16 21 H 0.07 0.53 6.93 -51.93 -0.36 0.17 16 22 H 0.08 0.84 6.55 -51.93 -0.34 0.50 16 23 H 0.03 0.26 8.13 -51.93 -0.42 -0.17 16 24 H 0.08 0.90 6.95 -51.93 -0.36 0.54 16 25 H 0.04 0.43 8.11 -51.93 -0.42 0.01 16 26 H 0.07 1.02 6.59 -51.93 -0.34 0.68 16 27 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 28 H 0.06 1.17 8.14 -51.92 -0.42 0.75 16 29 H 0.06 1.12 8.14 -51.92 -0.42 0.70 16 30 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 31 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.16 1.05 8.14 -51.93 -0.42 0.62 16 33 H 0.14 0.73 8.14 -51.93 -0.42 0.30 16 34 H 0.14 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.16 0.80 8.12 -51.93 -0.42 0.38 16 LS Contribution 314.84 15.07 4.74 4.74 Total: -1.00 -36.34 314.84 -9.91 -46.24 By element: Atomic # 1 Polarization: 1.59 SS G_CDS: -5.17 Total: -3.58 kcal Atomic # 6 Polarization: -22.00 SS G_CDS: 1.21 Total: -20.79 kcal Atomic # 7 Polarization: -30.98 SS G_CDS: -0.54 Total: -31.52 kcal Atomic # 8 Polarization: -19.54 SS G_CDS: -2.09 Total: -21.63 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.31 kcal Atomic # 16 Polarization: 13.26 SS G_CDS: -3.04 Total: 10.23 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -36.34 -9.91 -46.24 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931241640.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.605 kcal (2) G-P(sol) polarization free energy of solvation -36.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.242 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds