Wall clock time and date at job start Wed Apr 15 2020 11:43:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46908 * 1 3 3 C 1.46905 * 110.99729 * 2 1 4 4 C 1.53002 * 109.46877 * 66.04676 * 3 2 1 5 5 C 1.52998 * 109.46881 * 179.97438 * 4 3 2 6 6 S 1.80995 * 109.47306 * 179.97438 * 5 4 3 7 7 C 1.76195 * 100.00304 * 179.97438 * 6 5 4 8 8 H 1.07994 * 120.00061 * 0.02562 * 7 6 5 9 9 C 1.38805 * 120.00006 * 179.97438 * 7 6 5 10 10 N 1.31631 * 120.00021 * 0.02562 * 9 7 6 11 11 Si 1.86805 * 119.99768 * 180.02562 * 9 7 6 12 12 H 1.48496 * 109.46890 * 90.00527 * 11 9 7 13 13 H 1.48501 * 109.46920 * 209.99997 * 11 9 7 14 14 H 1.48498 * 109.47316 * 330.00302 * 11 9 7 15 15 C 1.46897 * 110.99930 * 236.05085 * 2 1 3 16 16 C 1.55889 * 110.81889 * 186.92352 * 15 2 1 17 17 S 1.83088 * 82.43655 * 142.73678 * 16 15 2 18 18 O 1.42105 * 111.36429 * 90.42226 * 17 16 15 19 19 O 1.42107 * 111.36052 * 229.36660 * 17 16 15 20 20 C 1.56631 * 110.84823 * 300.54510 * 15 2 1 21 21 H 1.09000 * 109.46835 * 178.29028 * 1 2 3 22 22 H 1.08998 * 109.46808 * 298.28670 * 1 2 3 23 23 H 1.08992 * 109.47012 * 58.29094 * 1 2 3 24 24 H 1.08998 * 109.46932 * 186.04860 * 3 2 1 25 25 H 1.08999 * 109.47191 * 306.04869 * 3 2 1 26 26 H 1.09002 * 109.47008 * 299.99863 * 4 3 2 27 27 H 1.08999 * 109.47052 * 60.00108 * 4 3 2 28 28 H 1.09002 * 109.47253 * 299.99793 * 5 4 3 29 29 H 1.08999 * 109.47123 * 60.00232 * 5 4 3 30 30 H 0.97003 * 119.99963 * 179.97438 * 10 9 7 31 31 H 1.08994 * 110.40089 * 63.74684 * 15 2 1 32 32 H 1.08993 * 114.38243 * 29.34368 * 16 15 2 33 33 H 1.09000 * 114.37806 * 256.12863 * 16 15 2 34 34 H 1.09002 * 114.54226 * 103.95909 * 20 15 2 35 35 H 1.09000 * 114.37742 * 330.57611 * 20 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.6314 2.0574 1.3183 5 6 2.1802 3.4856 1.3186 6 16 1.7490 4.2974 2.8777 7 6 2.4830 5.8772 2.6135 8 1 3.0026 6.0835 1.6895 9 6 2.3926 6.8571 3.5925 10 7 1.7588 6.6058 4.7185 11 14 3.1702 8.5322 3.3119 12 1 2.1824 9.4349 2.6682 13 1 3.5905 9.1072 4.6150 14 1 4.3558 8.3861 2.4298 15 6 1.9955 -0.7659 -1.1376 16 6 3.5445 -0.9110 -1.0386 17 16 3.1894 -2.5746 -1.7157 18 8 3.2215 -2.5729 -3.1364 19 8 3.8373 -3.5896 -0.9613 20 6 1.5008 -2.2511 -1.0865 21 1 -0.3633 -1.0272 -0.0307 22 1 -0.3633 0.4870 0.9049 23 1 -0.3633 0.5401 -0.8742 24 1 3.0797 1.3445 -0.1083 25 1 1.5611 1.9274 -0.8309 26 1 0.5471 2.0844 1.4265 27 1 2.0658 1.5015 2.1492 28 1 3.2645 3.4583 1.2106 29 1 1.7462 4.0418 0.4877 30 1 1.6959 7.2905 5.4028 31 1 1.7098 -0.2944 -2.0779 32 1 3.9320 -0.9131 -0.0199 33 1 4.1013 -0.2602 -1.7128 34 1 0.7046 -2.4877 -1.7923 35 1 1.3152 -2.6291 -0.0811 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000931241640.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:18 Heat of formation + Delta-G solvation = -78.417412 kcal Electronic energy + Delta-G solvation = -17274.764134 eV Core-core repulsion = 14332.964513 eV Total energy + Delta-G solvation = -2941.799621 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 279.075 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.59118 -38.17370 -37.02458 -35.51796 -34.60345 -32.81255 -29.12598 -27.86685 -27.12047 -25.59276 -22.25613 -21.29236 -19.69954 -19.56063 -17.89501 -17.44764 -17.38889 -16.89804 -16.54971 -16.38759 -15.76034 -15.46046 -15.31084 -14.59537 -14.32284 -14.17027 -13.60592 -13.35191 -13.22396 -13.15290 -13.10889 -12.99967 -12.92147 -12.76065 -12.65854 -12.37212 -12.27877 -11.60354 -11.52650 -11.30677 -11.16485 -11.13832 -10.31239 -9.42677 -8.66509 -8.37732 -6.13769 -0.90596 1.31396 1.39089 1.39431 1.48603 1.74521 2.28117 2.51773 2.78951 2.96635 3.08250 3.12768 3.27383 3.34204 3.98747 4.00298 4.18768 4.28928 4.32768 4.45140 4.56328 4.61499 4.65719 4.75659 4.84202 4.84560 4.90900 5.10020 5.19535 5.33490 5.39421 5.93639 5.97830 6.17684 7.04698 8.71598 Molecular weight = 279.07amu Principal moments of inertia in cm(-1) A = 0.042025 B = 0.002899 C = 0.002816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 666.116393 B = 9657.514575 C = 9940.322197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.010 3.990 2 N -0.523 5.523 3 C 0.061 3.939 4 C -0.083 4.083 5 C -0.088 4.088 6 S -0.199 6.199 7 C -0.539 4.539 8 H 0.073 0.927 9 C 0.015 3.985 10 N -0.907 5.907 11 Si 0.993 3.007 12 H -0.268 1.268 13 H -0.275 1.275 14 H -0.263 1.263 15 C 0.023 3.977 16 C -0.549 4.549 17 S 2.394 3.606 18 O -0.962 6.962 19 O -0.977 6.977 20 C -0.534 4.534 21 H 0.093 0.907 22 H 0.067 0.933 23 H 0.032 0.968 24 H 0.089 0.911 25 H 0.041 0.959 26 H 0.064 0.936 27 H 0.067 0.933 28 H 0.064 0.936 29 H 0.060 0.940 30 H 0.271 0.729 31 H 0.096 0.904 32 H 0.160 0.840 33 H 0.159 0.841 34 H 0.167 0.833 35 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.647 -16.719 -13.935 21.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 N -0.247 5.247 3 C -0.068 4.068 4 C -0.122 4.122 5 C -0.238 4.238 6 S 0.030 5.970 7 C -0.687 4.687 8 H 0.091 0.909 9 C -0.190 4.190 10 N -0.544 5.544 11 Si 0.815 3.185 12 H -0.193 1.193 13 H -0.200 1.200 14 H -0.187 1.187 15 C -0.090 4.090 16 C -0.680 4.680 17 S 2.582 3.418 18 O -0.959 6.959 19 O -0.974 6.974 20 C -0.666 4.666 21 H 0.112 0.888 22 H 0.086 0.914 23 H 0.051 0.949 24 H 0.108 0.892 25 H 0.059 0.941 26 H 0.082 0.918 27 H 0.086 0.914 28 H 0.082 0.918 29 H 0.079 0.921 30 H 0.080 0.920 31 H 0.114 0.886 32 H 0.178 0.822 33 H 0.177 0.823 34 H 0.185 0.815 35 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -0.546 -18.136 -13.000 22.321 hybrid contribution 0.157 2.873 -1.076 3.072 sum -0.388 -15.263 -14.076 20.767 Atomic orbital electron populations 1.22605 0.86155 1.03573 1.01398 1.62195 1.09043 1.13532 1.39955 1.22142 1.01300 0.87420 0.95974 1.21166 1.00959 0.91713 0.98388 1.23166 1.02596 0.98981 0.99054 1.84646 1.74941 1.13940 1.23466 1.23046 1.40873 0.98671 1.06060 0.90923 1.26067 0.95527 1.03355 0.94039 1.70155 1.41242 1.35866 1.07131 0.85023 0.78659 0.76699 0.78079 1.19311 1.19978 1.18671 1.24085 0.92955 0.95386 0.96541 1.31043 0.99216 1.22834 1.14935 1.09542 0.80365 0.77409 0.74522 1.93619 1.86331 1.87269 1.28672 1.93543 1.73940 1.57106 1.72784 1.31124 1.20889 0.99520 1.15018 0.88848 0.91441 0.94907 0.89236 0.94084 0.91780 0.91381 0.91767 0.92126 0.91971 0.88637 0.82160 0.82297 0.81465 0.81566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.17 9.12 127.69 1.17 1.33 16 2 N -0.52 -9.14 4.67 ******* -4.75 -13.89 16 3 C 0.06 1.32 4.84 86.30 0.42 1.73 16 4 C -0.08 -2.46 5.14 30.59 0.16 -2.30 16 5 C -0.09 -3.38 5.67 71.98 0.41 -2.98 16 6 S -0.20 -10.40 21.44 -56.49 -1.21 -11.61 16 7 C -0.54 -30.82 9.50 67.96 0.65 -30.17 16 8 H 0.07 3.99 7.80 -2.91 -0.02 3.97 16 9 C 0.02 0.85 5.49 84.86 0.47 1.32 16 10 N -0.91 -54.50 13.22 21.65 0.29 -54.21 16 11 Si 0.99 43.48 29.55 68.60 2.03 45.51 16 12 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 13 H -0.27 -11.61 7.11 99.48 0.71 -10.91 16 14 H -0.26 -10.97 7.11 99.48 0.71 -10.26 16 15 C 0.02 0.28 2.52 47.18 0.12 0.39 16 16 C -0.55 -5.91 7.38 72.98 0.54 -5.37 16 17 S 2.39 30.11 6.80 -56.49 -0.38 29.73 16 18 O -0.96 -18.56 18.18 -127.71 -2.32 -20.88 16 19 O -0.98 -20.62 18.18 -127.71 -2.32 -22.95 16 20 C -0.53 -4.21 7.32 73.25 0.54 -3.68 16 21 H 0.09 1.06 6.93 -2.39 -0.02 1.05 16 22 H 0.07 1.28 6.55 -2.39 -0.02 1.27 16 23 H 0.03 0.50 8.13 -2.39 -0.02 0.48 16 24 H 0.09 1.77 6.95 -2.39 -0.02 1.75 16 25 H 0.04 0.86 8.11 -2.39 -0.02 0.84 16 26 H 0.06 1.93 6.59 -2.39 -0.02 1.91 16 27 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 28 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 29 H 0.06 2.28 8.14 -2.40 -0.02 2.26 16 30 H 0.27 15.11 8.31 -92.71 -0.77 14.34 16 31 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 32 H 0.16 1.78 8.14 -2.39 -0.02 1.76 16 33 H 0.16 1.20 8.14 -2.39 -0.02 1.18 16 34 H 0.17 0.52 8.14 -2.39 -0.02 0.50 16 35 H 0.17 1.14 8.12 -2.39 -0.02 1.12 16 Total: -1.00 -78.73 314.84 -3.16 -81.89 By element: Atomic # 1 Polarization: 5.08 SS G_CDS: 1.07 Total: 6.15 kcal Atomic # 6 Polarization: -44.18 SS G_CDS: 4.45 Total: -39.73 kcal Atomic # 7 Polarization: -63.64 SS G_CDS: -4.47 Total: -68.11 kcal Atomic # 8 Polarization: -39.18 SS G_CDS: -4.64 Total: -43.83 kcal Atomic # 14 Polarization: 43.48 SS G_CDS: 2.03 Total: 45.51 kcal Atomic # 16 Polarization: 19.71 SS G_CDS: -1.59 Total: 18.12 kcal Total: -78.73 -3.16 -81.89 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931241640.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.469 kcal (2) G-P(sol) polarization free energy of solvation -78.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.887 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds