Wall clock time and date at job start Wed Apr 15 2020 11:43:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46892 * 1 3 3 C 1.46897 * 111.00159 * 2 1 4 4 C 1.50703 * 109.46670 * 66.05048 * 3 2 1 5 5 O 1.21288 * 120.00651 * 359.97438 * 4 3 2 6 6 N 1.34786 * 119.99750 * 180.02562 * 4 3 2 7 7 C 1.37093 * 119.99974 * 179.97438 * 6 4 3 8 8 H 1.08000 * 120.00043 * 359.97438 * 7 6 4 9 9 C 1.38947 * 120.00133 * 179.97438 * 7 6 4 10 10 N 1.31415 * 120.00342 * 179.97438 * 9 7 6 11 11 Si 1.86803 * 120.00031 * 359.97438 * 9 7 6 12 12 H 1.48502 * 109.47382 * 89.99762 * 11 9 7 13 13 H 1.48494 * 109.47257 * 210.00242 * 11 9 7 14 14 H 1.48506 * 109.46872 * 330.00131 * 11 9 7 15 15 C 1.46905 * 110.99944 * 236.04816 * 2 1 3 16 16 C 1.50702 * 109.47123 * 293.95515 * 15 2 1 17 17 C 1.32825 * 124.72272 * 90.00109 * 16 15 2 18 18 C 1.44400 * 113.07203 * 180.28822 * 17 16 15 19 19 C 1.43201 * 123.45140 * 179.72571 * 18 17 16 20 20 N 6.67316 * 63.09777 * 197.83697 * 2 1 3 21 21 C 1.35955 * 113.09789 * 359.50679 * 18 17 16 22 22 S 1.70449 * 110.83078 * 0.47753 * 21 18 17 23 23 H 1.09005 * 109.47287 * 183.95392 * 1 2 3 24 24 H 1.08998 * 109.47310 * 303.95354 * 1 2 3 25 25 H 1.09001 * 109.47479 * 63.95209 * 1 2 3 26 26 H 1.08998 * 109.47125 * 186.04179 * 3 2 1 27 27 H 1.08991 * 109.47193 * 306.05037 * 3 2 1 28 28 H 0.96997 * 119.99572 * 359.97438 * 6 4 3 29 29 H 0.97001 * 120.00386 * 179.97438 * 10 9 7 30 30 H 1.09003 * 109.46863 * 173.95777 * 15 2 1 31 31 H 1.08998 * 109.46935 * 53.95174 * 15 2 1 32 32 H 1.08002 * 123.46002 * 0.02562 * 17 16 15 33 33 H 1.08000 * 124.58289 * 180.19639 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6369 2.0470 1.2985 5 8 1.0047 1.4455 2.1409 6 7 2.0180 3.3201 1.5235 7 6 1.6915 3.9349 2.7045 8 1 1.1286 3.3992 3.4545 9 6 2.0849 5.2472 2.9366 10 7 1.7714 5.8367 4.0685 11 14 3.0592 6.1735 1.6397 12 1 2.1235 6.8775 0.7265 13 1 3.9456 7.1647 2.3006 14 1 3.8832 5.2144 0.8608 15 6 1.9954 -0.7660 -1.1377 16 6 1.6368 -2.2204 -0.9730 17 6 0.5254 -2.7826 -1.4345 18 6 0.4346 -4.1910 -1.1288 19 6 -0.6724 -5.0129 -1.5158 20 7 -1.5505 -5.6649 -1.8228 21 6 1.5099 -4.6577 -0.4402 22 16 2.6295 -3.4071 -0.1442 23 1 -0.3634 -1.0253 0.0709 24 1 -0.3634 0.5740 0.8524 25 1 -0.3634 0.4513 -0.9233 26 1 3.0797 1.3443 -0.1082 27 1 1.5610 1.9273 -0.8308 28 1 2.5233 3.8013 0.8497 29 1 2.0464 6.7527 4.2307 30 1 3.0797 -0.6611 -1.1756 31 1 1.5610 -0.3872 -2.0628 32 1 -0.2343 -2.2410 -1.9784 33 1 1.6354 -5.6814 -0.1198 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000933776805.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:21 Heat of formation + Delta-G solvation = 42.151706 kcal Electronic energy + Delta-G solvation = -18233.242581 eV Core-core repulsion = 15193.520029 eV Total energy + Delta-G solvation = -3039.722552 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 279.078 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.10109 -38.36812 -36.80783 -35.73760 -33.93634 -31.71001 -31.18276 -27.99392 -27.16473 -25.20402 -24.48593 -22.19478 -20.29893 -19.38254 -18.35611 -18.04759 -17.10177 -16.16641 -15.60610 -15.10262 -14.89411 -14.55228 -14.24257 -13.82950 -13.78623 -13.62440 -13.19466 -12.98527 -12.81089 -12.47495 -12.43063 -12.22930 -12.00848 -11.69968 -11.45132 -11.31269 -11.08877 -11.02106 -10.61425 -9.99336 -9.55700 -9.17701 -8.66050 -8.60352 -8.20337 -8.02976 -6.32543 -3.84121 0.48154 1.25227 1.62850 1.70851 2.50201 3.00581 3.04875 3.13706 3.25678 3.71210 3.80574 3.98919 4.08771 4.46874 4.71259 4.78345 5.05378 5.10612 5.18666 5.32784 5.49715 5.56980 5.63897 5.73001 5.80157 5.83552 5.92100 5.98496 6.47617 7.05893 7.17009 7.28747 7.56506 8.12922 8.58401 8.93831 9.40697 9.81403 10.80551 Molecular weight = 279.08amu Principal moments of inertia in cm(-1) A = 0.037803 B = 0.003259 C = 0.003200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 740.496753 B = 8589.111459 C = 8747.098102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.514 5.514 3 C 0.043 3.957 4 C 0.452 3.548 5 O -0.557 6.557 6 N -0.591 5.591 7 C -0.304 4.304 8 H 0.120 0.880 9 C 0.041 3.959 10 N -0.881 5.881 11 Si 0.880 3.120 12 H -0.271 1.271 13 H -0.277 1.277 14 H -0.269 1.269 15 C 0.119 3.881 16 C -0.175 4.175 17 C -0.101 4.101 18 C -0.056 4.056 19 C 0.279 3.721 20 N -0.426 5.426 21 C -0.206 4.206 22 S 0.247 5.753 23 H 0.065 0.935 24 H 0.098 0.902 25 H 0.016 0.984 26 H 0.091 0.909 27 H 0.051 0.949 28 H 0.370 0.630 29 H 0.273 0.727 30 H 0.088 0.912 31 H 0.056 0.944 32 H 0.150 0.850 33 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.882 -14.514 -13.931 20.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 N -0.238 5.238 3 C -0.088 4.088 4 C 0.238 3.762 5 O -0.439 6.439 6 N -0.231 5.231 7 C -0.433 4.433 8 H 0.137 0.863 9 C -0.162 4.162 10 N -0.521 5.521 11 Si 0.706 3.294 12 H -0.197 1.197 13 H -0.202 1.202 14 H -0.195 1.195 15 C -0.010 4.010 16 C -0.293 4.293 17 C -0.131 4.131 18 C -0.075 4.075 19 C -0.038 4.038 20 N -0.103 5.103 21 C -0.348 4.348 22 S 0.515 5.485 23 H 0.084 0.916 24 H 0.116 0.884 25 H 0.035 0.965 26 H 0.109 0.891 27 H 0.069 0.931 28 H 0.203 0.797 29 H 0.084 0.916 30 H 0.106 0.894 31 H 0.074 0.926 32 H 0.168 0.832 33 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges 4.668 -15.873 -12.506 20.740 hybrid contribution -0.605 1.392 -2.214 2.684 sum 4.063 -14.481 -14.719 21.044 Atomic orbital electron populations 1.22633 0.86216 1.02599 1.01600 1.61575 1.09298 1.12575 1.40399 1.21912 1.00855 0.88858 0.97225 1.19590 0.85232 0.82432 0.88944 1.90538 1.42553 1.64052 1.46753 1.42208 1.50928 1.11953 1.17961 1.19420 1.33682 0.96204 0.93984 0.86259 1.25041 0.97885 0.96520 0.96730 1.69621 1.45738 1.13563 1.23216 0.86675 0.80483 0.80547 0.81689 1.19694 1.20201 1.19451 1.20608 1.00785 0.86615 0.93026 1.24250 0.99626 1.00244 1.05149 1.20954 0.98227 0.91387 1.02552 1.16156 0.92261 0.92122 1.06958 1.25088 0.92529 0.92983 0.93201 1.81258 1.10288 1.09237 1.09479 1.25595 0.99289 1.05984 1.03923 1.83310 1.19423 0.94780 1.51011 0.91642 0.88374 0.96526 0.89088 0.93081 0.79732 0.91607 0.89351 0.92648 0.83243 0.80916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 8.89 60.06 0.53 0.78 16 2 N -0.51 -7.32 4.49 -245.83 -1.10 -8.43 16 3 C 0.04 0.65 5.45 -4.98 -0.03 0.62 16 4 C 0.45 9.72 7.48 -10.98 -0.08 9.64 16 5 O -0.56 -14.25 13.91 5.55 0.08 -14.17 16 6 N -0.59 -13.50 5.09 -10.96 -0.06 -13.55 16 7 C -0.30 -8.38 10.16 -14.94 -0.15 -8.53 16 8 H 0.12 3.77 7.39 -52.49 -0.39 3.39 16 9 C 0.04 1.11 5.50 -17.47 -0.10 1.01 16 10 N -0.88 -25.37 13.96 55.50 0.77 -24.59 16 11 Si 0.88 18.83 27.74 -169.99 -4.71 14.12 16 12 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 13 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 14 H -0.27 -5.19 6.52 56.52 0.37 -4.82 16 15 C 0.12 1.19 5.43 -4.97 -0.03 1.16 16 16 C -0.17 -1.66 5.39 -36.17 -0.19 -1.85 16 17 C -0.10 -0.93 8.71 -39.02 -0.34 -1.27 16 18 C -0.06 -0.53 5.84 -106.37 -0.62 -1.15 16 19 C 0.28 3.12 15.62 -22.47 -0.35 2.77 16 20 N -0.43 -5.68 18.54 41.84 0.78 -4.91 16 21 C -0.21 -1.62 10.78 29.91 0.32 -1.29 16 22 S 0.25 2.01 23.00 -107.50 -2.47 -0.46 16 23 H 0.06 0.87 6.29 -51.93 -0.33 0.55 16 24 H 0.10 1.81 5.82 -51.93 -0.30 1.51 16 25 H 0.02 0.21 8.14 -51.93 -0.42 -0.21 16 26 H 0.09 1.16 7.93 -51.93 -0.41 0.75 16 27 H 0.05 0.67 8.12 -51.93 -0.42 0.25 16 28 H 0.37 7.36 5.76 -40.82 -0.24 7.12 16 29 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 30 H 0.09 0.75 7.93 -51.93 -0.41 0.34 16 31 H 0.06 0.48 8.12 -51.93 -0.42 0.06 16 32 H 0.15 1.24 8.06 -52.49 -0.42 0.82 16 33 H 0.17 0.97 8.06 -52.49 -0.42 0.55 16 LS Contribution 306.62 15.07 4.62 4.62 Total: -1.00 -32.66 306.62 -6.49 -39.15 By element: Atomic # 1 Polarization: 9.69 SS G_CDS: -3.36 Total: 6.34 kcal Atomic # 6 Polarization: 2.92 SS G_CDS: -1.03 Total: 1.89 kcal Atomic # 7 Polarization: -51.87 SS G_CDS: 0.39 Total: -51.48 kcal Atomic # 8 Polarization: -14.25 SS G_CDS: 0.08 Total: -14.17 kcal Atomic # 14 Polarization: 18.83 SS G_CDS: -4.71 Total: 14.12 kcal Atomic # 16 Polarization: 2.01 SS G_CDS: -2.47 Total: -0.46 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -32.66 -6.49 -39.15 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000933776805.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.297 kcal (2) G-P(sol) polarization free energy of solvation -32.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.145 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds