Wall clock time and date at job start Wed Apr 15 2020 11:43:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46892 * 1 3 3 C 1.46897 * 111.00159 * 2 1 4 4 C 1.50703 * 109.46670 * 66.05048 * 3 2 1 5 5 O 1.21288 * 120.00651 * 359.97438 * 4 3 2 6 6 N 1.34786 * 119.99750 * 180.02562 * 4 3 2 7 7 C 1.37093 * 119.99974 * 179.97438 * 6 4 3 8 8 H 1.08000 * 120.00043 * 359.97438 * 7 6 4 9 9 C 1.38947 * 120.00133 * 179.97438 * 7 6 4 10 10 N 1.31415 * 120.00342 * 179.97438 * 9 7 6 11 11 Si 1.86803 * 120.00031 * 359.97438 * 9 7 6 12 12 H 1.48502 * 109.47382 * 89.99762 * 11 9 7 13 13 H 1.48494 * 109.47257 * 210.00242 * 11 9 7 14 14 H 1.48506 * 109.46872 * 330.00131 * 11 9 7 15 15 C 1.46905 * 110.99944 * 236.04816 * 2 1 3 16 16 C 1.50702 * 109.47123 * 293.95515 * 15 2 1 17 17 C 1.32825 * 124.72272 * 90.00109 * 16 15 2 18 18 C 1.44400 * 113.07203 * 180.28822 * 17 16 15 19 19 C 1.43201 * 123.45140 * 179.72571 * 18 17 16 20 20 N 6.67316 * 63.09777 * 197.83697 * 2 1 3 21 21 C 1.35955 * 113.09789 * 359.50679 * 18 17 16 22 22 S 1.70449 * 110.83078 * 0.47753 * 21 18 17 23 23 H 1.09005 * 109.47287 * 183.95392 * 1 2 3 24 24 H 1.08998 * 109.47310 * 303.95354 * 1 2 3 25 25 H 1.09001 * 109.47479 * 63.95209 * 1 2 3 26 26 H 1.08998 * 109.47125 * 186.04179 * 3 2 1 27 27 H 1.08991 * 109.47193 * 306.05037 * 3 2 1 28 28 H 0.96997 * 119.99572 * 359.97438 * 6 4 3 29 29 H 0.97001 * 120.00386 * 179.97438 * 10 9 7 30 30 H 1.09003 * 109.46863 * 173.95777 * 15 2 1 31 31 H 1.08998 * 109.46935 * 53.95174 * 15 2 1 32 32 H 1.08002 * 123.46002 * 0.02562 * 17 16 15 33 33 H 1.08000 * 124.58289 * 180.19639 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6369 2.0470 1.2985 5 8 1.0047 1.4455 2.1409 6 7 2.0180 3.3201 1.5235 7 6 1.6915 3.9349 2.7045 8 1 1.1286 3.3992 3.4545 9 6 2.0849 5.2472 2.9366 10 7 1.7714 5.8367 4.0685 11 14 3.0592 6.1735 1.6397 12 1 2.1235 6.8775 0.7265 13 1 3.9456 7.1647 2.3006 14 1 3.8832 5.2144 0.8608 15 6 1.9954 -0.7660 -1.1377 16 6 1.6368 -2.2204 -0.9730 17 6 0.5254 -2.7826 -1.4345 18 6 0.4346 -4.1910 -1.1288 19 6 -0.6724 -5.0129 -1.5158 20 7 -1.5505 -5.6649 -1.8228 21 6 1.5099 -4.6577 -0.4402 22 16 2.6295 -3.4071 -0.1442 23 1 -0.3634 -1.0253 0.0709 24 1 -0.3634 0.5740 0.8524 25 1 -0.3634 0.4513 -0.9233 26 1 3.0797 1.3443 -0.1082 27 1 1.5610 1.9273 -0.8308 28 1 2.5233 3.8013 0.8497 29 1 2.0464 6.7527 4.2307 30 1 3.0797 -0.6611 -1.1756 31 1 1.5610 -0.3872 -2.0628 32 1 -0.2343 -2.2410 -1.9784 33 1 1.6354 -5.6814 -0.1198 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000933776805.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:20 Heat of formation + Delta-G solvation = 17.903855 kcal Electronic energy + Delta-G solvation = -18234.294047 eV Core-core repulsion = 15193.520029 eV Total energy + Delta-G solvation = -3040.774018 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 279.078 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.49035 -39.36559 -37.91292 -36.70977 -35.82930 -33.70163 -32.04037 -29.32943 -28.05690 -26.44222 -25.75243 -23.35591 -21.18605 -21.01386 -20.12166 -18.86496 -17.86606 -17.62306 -16.79598 -16.64282 -16.13920 -15.66542 -15.36628 -15.04486 -14.96412 -14.72449 -14.50683 -14.27182 -13.90810 -13.68592 -13.60552 -13.24543 -13.06644 -12.98629 -12.58036 -12.49565 -12.33866 -12.30432 -11.94254 -11.70892 -11.41321 -10.32077 -10.17770 -9.86932 -9.29289 -9.13685 -8.36606 -5.97009 -0.19796 0.60498 0.91293 1.00284 1.33813 1.39615 1.48474 1.65713 2.03928 2.27426 2.43230 2.77083 3.07102 3.20388 3.36681 3.79047 4.09494 4.18738 4.33079 4.45720 4.46167 4.53606 4.62689 4.74047 4.78878 4.96813 5.06775 5.26601 5.29254 5.58118 5.94189 6.05775 6.19637 6.44912 6.65585 6.94997 7.46803 8.05401 8.81254 Molecular weight = 279.08amu Principal moments of inertia in cm(-1) A = 0.037803 B = 0.003259 C = 0.003200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 740.496753 B = 8589.111459 C = 8747.098102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.537 5.537 3 C 0.055 3.945 4 C 0.451 3.549 5 O -0.606 6.606 6 N -0.594 5.594 7 C -0.324 4.324 8 H 0.054 0.946 9 C -0.018 4.018 10 N -0.939 5.939 11 Si 0.965 3.035 12 H -0.259 1.259 13 H -0.279 1.279 14 H -0.226 1.226 15 C 0.122 3.878 16 C -0.193 4.193 17 C -0.098 4.098 18 C -0.078 4.078 19 C 0.300 3.700 20 N -0.473 5.473 21 C -0.192 4.192 22 S 0.271 5.729 23 H 0.072 0.928 24 H 0.049 0.951 25 H 0.037 0.963 26 H 0.127 0.873 27 H 0.083 0.917 28 H 0.390 0.610 29 H 0.278 0.722 30 H 0.109 0.891 31 H 0.077 0.923 32 H 0.157 0.843 33 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.353 -14.660 -17.187 23.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.262 5.262 3 C -0.076 4.076 4 C 0.239 3.761 5 O -0.490 6.490 6 N -0.236 5.236 7 C -0.453 4.453 8 H 0.072 0.928 9 C -0.216 4.216 10 N -0.580 5.580 11 Si 0.785 3.215 12 H -0.184 1.184 13 H -0.204 1.204 14 H -0.149 1.149 15 C -0.007 4.007 16 C -0.311 4.311 17 C -0.128 4.128 18 C -0.097 4.097 19 C -0.016 4.016 20 N -0.150 5.150 21 C -0.334 4.334 22 S 0.539 5.461 23 H 0.091 0.909 24 H 0.068 0.932 25 H 0.056 0.944 26 H 0.145 0.855 27 H 0.101 0.899 28 H 0.225 0.775 29 H 0.087 0.913 30 H 0.127 0.873 31 H 0.095 0.905 32 H 0.174 0.826 33 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges 7.147 -16.050 -15.795 23.626 hybrid contribution -1.409 1.294 -1.088 2.201 sum 5.737 -14.756 -16.884 23.146 Atomic orbital electron populations 1.22435 0.87092 1.02373 1.00429 1.61466 1.08817 1.12469 1.43447 1.21849 1.03165 0.89167 0.93419 1.20978 0.82794 0.81671 0.90644 1.90532 1.44064 1.65134 1.49224 1.42040 1.51943 1.12728 1.16924 1.18977 1.34452 0.96892 0.95011 0.92821 1.26131 0.98807 0.97057 0.99641 1.69815 1.47561 1.14297 1.26300 0.85361 0.78851 0.79061 0.78207 1.18375 1.20401 1.14911 1.20699 1.01952 0.85954 0.92049 1.24306 1.00200 1.00535 1.06084 1.21055 0.98313 0.91266 1.02213 1.16206 0.92473 0.92264 1.08773 1.25320 0.92126 0.92172 0.91963 1.81274 1.11725 1.10696 1.11312 1.25911 0.98321 1.07122 1.02003 1.83292 1.18691 0.94152 1.49973 0.90901 0.93170 0.94446 0.85507 0.89886 0.77475 0.91299 0.87274 0.90540 0.82595 0.78782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.69 8.89 127.69 1.13 1.82 16 2 N -0.54 -13.78 4.49 -931.67 -4.18 -17.97 16 3 C 0.05 1.46 5.45 85.56 0.47 1.92 16 4 C 0.45 19.14 7.48 87.66 0.66 19.80 16 5 O -0.61 -32.15 13.91 -3.05 -0.04 -32.19 16 6 N -0.59 -26.72 5.09 -306.98 -1.56 -28.28 16 7 C -0.32 -18.56 10.16 84.04 0.85 -17.70 16 8 H 0.05 3.69 7.39 -2.91 -0.02 3.67 16 9 C -0.02 -1.00 5.50 84.93 0.47 -0.53 16 10 N -0.94 -56.22 13.96 21.66 0.30 -55.92 16 11 Si 0.97 37.63 27.74 68.60 1.90 39.53 16 12 H -0.26 -9.60 7.11 99.48 0.71 -8.90 16 13 H -0.28 -10.93 7.11 99.48 0.71 -10.22 16 14 H -0.23 -7.19 6.52 99.48 0.65 -6.54 16 15 C 0.12 1.92 5.43 85.56 0.46 2.39 16 16 C -0.19 -3.07 5.39 24.51 0.13 -2.94 16 17 C -0.10 -1.58 8.71 22.66 0.20 -1.38 16 18 C -0.08 -1.32 5.84 -21.00 -0.12 -1.44 16 19 C 0.30 6.43 15.62 88.33 1.38 7.81 16 20 N -0.47 -12.51 18.54 19.00 0.35 -12.15 16 21 C -0.19 -2.51 10.78 67.29 0.73 -1.79 16 22 S 0.27 3.62 23.00 -56.49 -1.30 2.32 16 23 H 0.07 1.87 6.29 -2.38 -0.01 1.85 16 24 H 0.05 1.89 5.82 -2.39 -0.01 1.88 16 25 H 0.04 0.86 8.14 -2.39 -0.02 0.84 16 26 H 0.13 2.53 7.93 -2.39 -0.02 2.51 16 27 H 0.08 1.75 8.12 -2.39 -0.02 1.73 16 28 H 0.39 14.23 5.76 -92.71 -0.53 13.70 16 29 H 0.28 15.22 8.31 -92.71 -0.77 14.45 16 30 H 0.11 1.29 7.93 -2.39 -0.02 1.27 16 31 H 0.08 0.93 8.12 -2.39 -0.02 0.91 16 32 H 0.16 2.22 8.06 -2.91 -0.02 2.20 16 33 H 0.20 1.61 8.06 -2.91 -0.02 1.58 16 Total: -1.00 -78.15 306.62 2.39 -75.77 By element: Atomic # 1 Polarization: 20.37 SS G_CDS: 0.56 Total: 20.94 kcal Atomic # 6 Polarization: 1.60 SS G_CDS: 6.35 Total: 7.95 kcal Atomic # 7 Polarization: -109.23 SS G_CDS: -5.09 Total: -114.32 kcal Atomic # 8 Polarization: -32.15 SS G_CDS: -0.04 Total: -32.19 kcal Atomic # 14 Polarization: 37.63 SS G_CDS: 1.90 Total: 39.53 kcal Atomic # 16 Polarization: 3.62 SS G_CDS: -1.30 Total: 2.32 kcal Total: -78.15 2.39 -75.77 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000933776805.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.671 kcal (2) G-P(sol) polarization free energy of solvation -78.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.767 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds