Wall clock time and date at job start Wed Apr 15 2020 11:43:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.35602 * 124.93712 * 2 1 4 4 C 1.35333 * 107.17180 * 179.73025 * 3 2 1 5 5 N 1.48012 * 127.23264 * 180.22673 * 4 3 2 6 6 O 1.31697 * 119.99863 * 0.15928 * 5 4 3 7 7 O 1.31706 * 120.00201 * 180.16728 * 5 4 3 8 8 C 1.41556 * 105.54012 * 0.36277 * 4 3 2 9 9 C 1.47545 * 126.47410 * 179.90436 * 8 4 3 10 10 O 1.21500 * 119.99699 * 6.93433 * 9 8 4 11 11 N 1.34780 * 120.00538 * 186.66469 * 9 8 4 12 12 C 1.33319 * 120.00255 * 176.15713 * 11 9 8 13 13 H 1.07997 * 120.00207 * 338.02252 * 12 11 9 14 14 C 1.46782 * 119.99728 * 158.02548 * 12 11 9 15 15 N 1.29314 * 120.00193 * 357.53751 * 14 12 11 16 16 Si 1.86803 * 119.99775 * 177.53210 * 14 12 11 17 17 H 1.48498 * 109.47097 * 0.02562 * 16 14 12 18 18 H 1.48505 * 109.47034 * 120.00363 * 16 14 12 19 19 H 1.48500 * 109.47203 * 240.00197 * 16 14 12 20 20 C 1.46504 * 119.99490 * 356.15343 * 11 9 8 21 21 C 1.47204 * 109.47041 * 277.57752 * 20 11 9 22 22 N 4.41306 * 98.44724 * 149.66628 * 2 1 3 23 23 N 1.28483 * 124.92895 * 179.97438 * 2 1 3 24 24 H 1.09003 * 109.47196 * 270.01271 * 1 2 3 25 25 H 1.09005 * 109.46978 * 30.00875 * 1 2 3 26 26 H 1.08999 * 109.47791 * 150.01308 * 1 2 3 27 27 H 1.08006 * 126.41313 * 359.97419 * 3 2 1 28 28 H 0.97000 * 119.99961 * 179.97438 * 15 14 12 29 29 H 1.09000 * 109.47186 * 37.57230 * 20 11 9 30 30 H 1.09001 * 109.46704 * 157.57835 * 20 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2415 1.1116 0.0000 4 6 3.5303 0.6987 0.0061 5 7 4.7427 1.5477 0.0131 6 8 4.6278 2.8597 0.0171 7 8 5.9364 0.9912 0.0153 8 6 3.4754 -0.7158 0.0011 9 6 4.6269 -1.6383 0.0027 10 8 5.7535 -1.2033 0.1358 11 7 4.4287 -2.9639 -0.1381 12 6 5.4726 -3.7898 -0.2136 13 1 6.4385 -3.4130 -0.5160 14 6 5.3091 -5.2111 0.1143 15 7 4.1643 -5.6531 0.5221 16 14 6.7548 -6.3816 -0.0578 17 1 7.9436 -5.6326 -0.5383 18 1 7.0558 -6.9937 1.2614 19 1 6.4143 -7.4489 -1.0325 20 6 3.0660 -3.4974 -0.2081 21 6 2.5283 -3.6499 1.1537 22 7 2.1133 -3.7676 2.2046 23 7 2.2006 -1.0534 0.0005 24 1 -0.3634 0.0002 1.0277 25 1 -0.3633 0.8899 -0.5140 26 1 -0.3634 -0.8901 -0.5136 27 1 1.8962 2.1350 -0.0004 28 1 4.0562 -6.5925 0.7384 29 1 2.4355 -2.8107 -0.7729 30 1 3.0809 -4.4681 -0.7037 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001143315647.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:23 Heat of formation + Delta-G solvation = 142.109888 kcal Electronic energy + Delta-G solvation = -21808.225310 eV Core-core repulsion = 18226.544055 eV Total energy + Delta-G solvation = -3581.681254 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.080 amu Computer time = 2.17 seconds Orbital eigenvalues (eV) -42.99114 -38.75476 -38.03048 -35.76039 -34.44145 -33.69893 -33.54610 -32.33951 -31.26177 -28.21544 -27.40516 -26.32140 -24.66672 -22.21039 -21.35810 -19.76359 -18.17969 -17.97781 -17.24363 -16.91752 -16.75485 -16.10975 -15.94371 -15.05281 -15.01045 -14.25367 -13.82799 -13.49799 -13.31770 -13.18364 -12.96187 -12.75914 -12.08287 -11.73378 -11.44093 -11.40239 -11.23451 -10.69211 -10.61424 -10.53290 -10.43438 -10.21127 -9.97580 -9.63350 -9.42545 -9.29192 -8.59855 -8.35973 -6.83151 -3.97853 0.04068 1.45521 1.53465 2.08922 2.37318 2.99954 3.10981 3.16474 3.58718 3.86061 3.96055 4.12159 4.13222 4.25109 4.47061 4.72280 4.75004 4.86048 4.96258 5.06227 5.29030 5.33815 5.72674 6.10047 6.40528 6.45389 6.58992 7.00013 7.40588 7.59206 7.74515 8.15703 8.71249 8.84024 8.98878 9.74565 10.15868 Molecular weight = 279.08amu Principal moments of inertia in cm(-1) A = 0.019588 B = 0.006944 C = 0.005361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1429.134099 B = 4031.563945 C = 5222.084252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.278 5.278 3 C 0.077 3.923 4 C -0.085 4.085 5 N 0.010 4.990 6 O -0.248 6.248 7 O -0.076 6.076 8 C 0.092 3.908 9 C 0.469 3.531 10 O -0.527 6.527 11 N -0.387 5.387 12 C -0.326 4.326 13 H 0.121 0.879 14 C 0.041 3.959 15 N -0.837 5.837 16 Si 0.940 3.060 17 H -0.258 1.258 18 H -0.277 1.277 19 H -0.276 1.276 20 C 0.200 3.800 21 C 0.263 3.737 22 N -0.486 5.486 23 N -0.268 5.268 24 H 0.092 0.908 25 H 0.101 0.899 26 H 0.106 0.894 27 H 0.204 0.796 28 H 0.285 0.715 29 H 0.101 0.899 30 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.789 5.518 -5.048 13.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.062 5.062 3 C -0.075 4.075 4 C -0.186 4.186 5 N 0.486 4.514 6 O -0.418 6.418 7 O -0.287 6.287 8 C -0.070 4.070 9 C 0.258 3.742 10 O -0.406 6.406 11 N -0.104 5.104 12 C -0.456 4.456 13 H 0.138 0.862 14 C -0.172 4.172 15 N -0.472 5.472 16 Si 0.765 3.235 17 H -0.181 1.181 18 H -0.203 1.203 19 H -0.201 1.201 20 C 0.073 3.927 21 C -0.055 4.055 22 N -0.166 5.166 23 N -0.102 5.102 24 H 0.110 0.890 25 H 0.120 0.880 26 H 0.125 0.875 27 H 0.221 0.779 28 H 0.098 0.902 29 H 0.118 0.882 30 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -12.434 4.292 -3.376 13.580 hybrid contribution 1.212 0.306 -0.248 1.274 sum -11.222 4.598 -3.624 12.657 Atomic orbital electron populations 1.22363 0.71615 1.06152 1.05269 1.45735 1.08493 1.02619 1.49340 1.22573 0.88902 0.95163 1.00869 1.20062 0.84621 0.90452 1.23415 1.49243 1.03177 1.01931 0.97061 1.96201 1.95402 0.89679 1.60488 1.96494 1.06157 1.75894 1.50149 1.22895 0.92162 0.91205 1.00729 1.16577 0.86267 0.82040 0.89345 1.90848 1.21017 1.74489 1.54280 1.42452 1.05275 1.04561 1.58109 1.20867 0.91982 0.87785 1.44971 0.86170 1.27063 0.97913 0.98252 0.93927 1.68826 1.24765 1.17386 1.36246 0.85612 0.80714 0.78789 0.78385 1.18110 1.20280 1.20132 1.19346 0.83349 1.03360 0.86628 1.29143 0.91514 0.89853 0.95002 1.80880 1.11388 1.12372 1.11953 1.74319 1.01597 1.11680 1.22581 0.88991 0.88044 0.87533 0.77902 0.90221 0.88222 0.84176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 45. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.52 11.32 59.85 0.68 1.19 16 2 N -0.28 -3.40 3.71 -67.98 -0.25 -3.66 16 3 C 0.08 0.99 11.26 -16.92 -0.19 0.80 16 4 C -0.08 -1.59 7.31 -79.72 -0.58 -2.17 16 5 N 0.01 0.21 4.98 34.07 0.17 0.38 16 6 O -0.25 -5.02 19.81 -31.57 -0.63 -5.65 16 7 O -0.08 -1.85 16.17 -40.06 -0.65 -2.50 16 8 C 0.09 1.88 6.76 -82.79 -0.56 1.32 16 9 C 0.47 11.46 7.51 -12.46 -0.09 11.37 16 10 O -0.53 -14.49 12.92 -19.35 -0.25 -14.74 16 11 N -0.39 -9.20 2.52 -117.55 -0.30 -9.50 16 12 C -0.33 -8.12 9.51 -13.45 -0.13 -8.25 16 13 H 0.12 3.14 7.46 -52.49 -0.39 2.75 16 14 C 0.04 0.96 5.42 -15.16 -0.08 0.87 16 15 N -0.84 -19.40 8.96 56.00 0.50 -18.90 16 16 Si 0.94 18.47 29.65 -169.99 -5.04 13.43 16 17 H -0.26 -5.12 7.11 56.52 0.40 -4.72 16 18 H -0.28 -5.58 7.11 56.52 0.40 -5.18 16 19 H -0.28 -5.20 7.11 56.52 0.40 -4.80 16 20 C 0.20 4.10 4.74 -6.82 -0.03 4.07 16 21 C 0.26 5.84 12.78 -20.76 -0.27 5.58 16 22 N -0.49 -11.49 18.54 42.15 0.78 -10.71 16 23 N -0.27 -4.50 7.72 33.40 0.26 -4.24 16 24 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 25 H 0.10 0.25 8.13 -51.93 -0.42 -0.17 16 26 H 0.11 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.20 1.71 8.06 -52.48 -0.42 1.28 16 28 H 0.29 6.23 8.26 -40.82 -0.34 5.89 16 29 H 0.10 1.77 5.47 -51.93 -0.28 1.48 16 30 H 0.14 2.87 6.01 -51.93 -0.31 2.56 16 LS Contribution 282.60 15.07 4.26 4.26 Total: -1.00 -33.54 282.60 -4.21 -37.75 By element: Atomic # 1 Polarization: 1.11 SS G_CDS: -1.81 Total: -0.70 kcal Atomic # 6 Polarization: 16.04 SS G_CDS: -1.26 Total: 14.78 kcal Atomic # 7 Polarization: -47.79 SS G_CDS: 1.16 Total: -46.63 kcal Atomic # 8 Polarization: -21.37 SS G_CDS: -1.52 Total: -22.89 kcal Atomic # 14 Polarization: 18.47 SS G_CDS: -5.04 Total: 13.43 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -33.54 -4.21 -37.75 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143315647.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 179.861 kcal (2) G-P(sol) polarization free energy of solvation -33.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 146.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.751 kcal (6) G-S(sol) free energy of system = (1) + (5) 142.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.18 seconds