Wall clock time and date at job start Wed Apr 15 2020 11:43:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.35602 * 124.93712 * 2 1 4 4 C 1.35333 * 107.17180 * 179.73025 * 3 2 1 5 5 N 1.48012 * 127.23264 * 180.22673 * 4 3 2 6 6 O 1.31697 * 119.99863 * 0.15928 * 5 4 3 7 7 O 1.31706 * 120.00201 * 180.16728 * 5 4 3 8 8 C 1.41556 * 105.54012 * 0.36277 * 4 3 2 9 9 C 1.47545 * 126.47410 * 179.90436 * 8 4 3 10 10 O 1.21500 * 119.99699 * 6.93433 * 9 8 4 11 11 N 1.34780 * 120.00538 * 186.66469 * 9 8 4 12 12 C 1.33319 * 120.00255 * 176.15713 * 11 9 8 13 13 H 1.07997 * 120.00207 * 338.02252 * 12 11 9 14 14 C 1.46782 * 119.99728 * 158.02548 * 12 11 9 15 15 N 1.29314 * 120.00193 * 357.53751 * 14 12 11 16 16 Si 1.86803 * 119.99775 * 177.53210 * 14 12 11 17 17 H 1.48498 * 109.47097 * 0.02562 * 16 14 12 18 18 H 1.48505 * 109.47034 * 120.00363 * 16 14 12 19 19 H 1.48500 * 109.47203 * 240.00197 * 16 14 12 20 20 C 1.46504 * 119.99490 * 356.15343 * 11 9 8 21 21 C 1.47204 * 109.47041 * 277.57752 * 20 11 9 22 22 N 4.41306 * 98.44724 * 149.66628 * 2 1 3 23 23 N 1.28483 * 124.92895 * 179.97438 * 2 1 3 24 24 H 1.09003 * 109.47196 * 270.01271 * 1 2 3 25 25 H 1.09005 * 109.46978 * 30.00875 * 1 2 3 26 26 H 1.08999 * 109.47791 * 150.01308 * 1 2 3 27 27 H 1.08006 * 126.41313 * 359.97419 * 3 2 1 28 28 H 0.97000 * 119.99961 * 179.97438 * 15 14 12 29 29 H 1.09000 * 109.47186 * 37.57230 * 20 11 9 30 30 H 1.09001 * 109.46704 * 157.57835 * 20 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2415 1.1116 0.0000 4 6 3.5303 0.6987 0.0061 5 7 4.7427 1.5477 0.0131 6 8 4.6278 2.8597 0.0171 7 8 5.9364 0.9912 0.0153 8 6 3.4754 -0.7158 0.0011 9 6 4.6269 -1.6383 0.0027 10 8 5.7535 -1.2033 0.1358 11 7 4.4287 -2.9639 -0.1381 12 6 5.4726 -3.7898 -0.2136 13 1 6.4385 -3.4130 -0.5160 14 6 5.3091 -5.2111 0.1143 15 7 4.1643 -5.6531 0.5221 16 14 6.7548 -6.3816 -0.0578 17 1 7.9436 -5.6326 -0.5383 18 1 7.0558 -6.9937 1.2614 19 1 6.4143 -7.4489 -1.0325 20 6 3.0660 -3.4974 -0.2081 21 6 2.5283 -3.6499 1.1537 22 7 2.1133 -3.7676 2.2046 23 7 2.2006 -1.0534 0.0005 24 1 -0.3634 0.0002 1.0277 25 1 -0.3633 0.8899 -0.5140 26 1 -0.3634 -0.8901 -0.5136 27 1 1.8962 2.1350 -0.0004 28 1 4.0562 -6.5925 0.7384 29 1 2.4355 -2.8107 -0.7729 30 1 3.0809 -4.4681 -0.7037 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001143315647.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:22 Heat of formation + Delta-G solvation = 119.074830 kcal Electronic energy + Delta-G solvation = -21809.224185 eV Core-core repulsion = 18226.544055 eV Total energy + Delta-G solvation = -3582.680129 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.080 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -44.27535 -40.52286 -39.62875 -37.60421 -36.26567 -35.23355 -34.79204 -34.07530 -32.64699 -29.50395 -28.89410 -27.90616 -26.24540 -23.63401 -22.66761 -21.31562 -19.94423 -19.45306 -18.84985 -18.41080 -18.13092 -17.61789 -17.17090 -16.69968 -16.49228 -15.91579 -15.47253 -15.01139 -14.80745 -14.60526 -13.91464 -13.73051 -13.65734 -13.47422 -13.22348 -13.01111 -12.74120 -12.48290 -12.35146 -12.14305 -12.02744 -11.77332 -11.62200 -11.18202 -10.97002 -10.59107 -10.47201 -10.18591 -8.61170 -5.88733 -1.51710 0.08978 0.21879 0.64760 1.30909 1.40320 1.46757 1.57455 1.84141 2.11778 2.28446 2.35701 2.72924 2.91344 3.01340 3.29631 3.57983 3.61158 3.95218 4.09568 4.36278 4.39245 4.62004 4.71071 4.87669 4.89741 5.17937 5.33102 5.77754 5.86337 6.26791 6.37232 6.92334 7.02978 7.17305 7.93162 8.36594 Molecular weight = 279.08amu Principal moments of inertia in cm(-1) A = 0.019588 B = 0.006944 C = 0.005361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1429.134099 B = 4031.563945 C = 5222.084252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.067 3.933 2 N -0.257 5.257 3 C 0.128 3.872 4 C -0.123 4.123 5 N 0.019 4.981 6 O -0.181 6.181 7 O -0.204 6.204 8 C 0.062 3.938 9 C 0.457 3.543 10 O -0.571 6.571 11 N -0.398 5.398 12 C -0.371 4.371 13 H 0.090 0.910 14 C 0.021 3.979 15 N -0.850 5.850 16 Si 0.999 3.001 17 H -0.270 1.270 18 H -0.280 1.280 19 H -0.253 1.253 20 C 0.209 3.791 21 C 0.274 3.726 22 N -0.511 5.511 23 N -0.261 5.261 24 H 0.108 0.892 25 H 0.153 0.847 26 H 0.115 0.885 27 H 0.266 0.734 28 H 0.292 0.708 29 H 0.130 0.870 30 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.815 6.939 -5.477 17.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.041 5.041 3 C -0.025 4.025 4 C -0.224 4.224 5 N 0.488 4.512 6 O -0.374 6.374 7 O -0.383 6.383 8 C -0.100 4.100 9 C 0.246 3.754 10 O -0.454 6.454 11 N -0.115 5.115 12 C -0.501 4.501 13 H 0.108 0.892 14 C -0.191 4.191 15 N -0.484 5.484 16 Si 0.821 3.179 17 H -0.194 1.194 18 H -0.205 1.205 19 H -0.177 1.177 20 C 0.083 3.917 21 C -0.044 4.044 22 N -0.192 5.192 23 N -0.096 5.096 24 H 0.126 0.874 25 H 0.171 0.829 26 H 0.134 0.866 27 H 0.281 0.719 28 H 0.105 0.895 29 H 0.147 0.853 30 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -16.312 5.450 -3.814 17.616 hybrid contribution 2.017 0.214 -0.095 2.031 sum -14.295 5.664 -3.908 15.865 Atomic orbital electron populations 1.23119 0.67167 1.09296 1.07312 1.46462 1.10454 1.01318 1.45869 1.23434 0.86038 0.97345 0.95693 1.20464 0.85447 0.89878 1.26652 1.49548 1.04005 1.02020 0.95618 1.96120 1.95358 0.90425 1.55463 1.96561 1.07430 1.75867 1.58448 1.22293 0.92357 0.91613 1.03703 1.17219 0.87163 0.82719 0.88277 1.90818 1.23433 1.75586 1.55533 1.42555 1.06126 1.04455 1.58364 1.20680 0.91882 0.89135 1.48400 0.89207 1.27651 1.00104 0.98414 0.92925 1.68847 1.25546 1.18025 1.35936 0.84789 0.77585 0.77133 0.78408 1.19396 1.20534 1.17737 1.19466 0.82230 1.03971 0.86041 1.29448 0.90784 0.88994 0.95136 1.80869 1.12436 1.13373 1.12519 1.74177 1.00387 1.13749 1.21320 0.87355 0.82917 0.86617 0.71864 0.89532 0.85278 0.84177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.36 11.32 127.77 1.45 1.80 16 2 N -0.26 -4.96 3.71 -369.00 -1.37 -6.33 16 3 C 0.13 2.59 11.26 83.44 0.94 3.53 16 4 C -0.12 -4.40 7.31 36.52 0.27 -4.14 16 5 N 0.02 0.84 4.98 -46.11 -0.23 0.61 16 6 O -0.18 -6.82 19.81 3.52 0.07 -6.75 16 7 O -0.20 -10.86 16.17 11.63 0.19 -10.68 16 8 C 0.06 2.55 6.76 42.41 0.29 2.84 16 9 C 0.46 23.68 7.51 86.70 0.65 24.33 16 10 O -0.57 -34.44 12.92 19.92 0.26 -34.18 16 11 N -0.40 -19.90 2.52 -644.12 -1.62 -21.52 16 12 C -0.37 -19.77 9.51 86.70 0.82 -18.94 16 13 H 0.09 5.18 7.46 -2.91 -0.02 5.16 16 14 C 0.02 0.98 5.42 87.30 0.47 1.45 16 15 N -0.85 -39.68 8.96 23.26 0.21 -39.47 16 16 Si 1.00 38.84 29.65 68.60 2.03 40.87 16 17 H -0.27 -10.92 7.11 99.48 0.71 -10.21 16 18 H -0.28 -10.95 7.11 99.48 0.71 -10.24 16 19 H -0.25 -8.91 7.11 99.48 0.71 -8.20 16 20 C 0.21 8.62 4.74 84.57 0.40 9.02 16 21 C 0.27 12.11 12.78 89.44 1.14 13.25 16 22 N -0.51 -23.94 18.54 20.01 0.37 -23.57 16 23 N -0.26 -8.12 7.72 -48.23 -0.37 -8.49 16 24 H 0.11 0.42 8.14 -2.39 -0.02 0.40 16 25 H 0.15 -0.58 8.13 -2.38 -0.02 -0.60 16 26 H 0.12 0.55 8.14 -2.39 -0.02 0.53 16 27 H 0.27 2.07 8.06 -2.91 -0.02 2.05 16 28 H 0.29 12.66 8.26 -92.71 -0.77 11.89 16 29 H 0.13 4.46 5.47 -2.39 -0.01 4.44 16 30 H 0.14 5.78 6.01 -2.39 -0.01 5.77 16 Total: -1.00 -82.57 282.60 7.19 -75.37 By element: Atomic # 1 Polarization: -0.23 SS G_CDS: 1.22 Total: 1.00 kcal Atomic # 6 Polarization: 26.71 SS G_CDS: 6.43 Total: 33.14 kcal Atomic # 7 Polarization: -95.77 SS G_CDS: -3.01 Total: -98.78 kcal Atomic # 8 Polarization: -52.12 SS G_CDS: 0.52 Total: -51.61 kcal Atomic # 14 Polarization: 38.84 SS G_CDS: 2.03 Total: 40.87 kcal Total: -82.57 7.19 -75.37 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143315647.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 194.448 kcal (2) G-P(sol) polarization free energy of solvation -82.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 111.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.373 kcal (6) G-S(sol) free energy of system = (1) + (5) 119.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds