Wall clock time and date at job start Wed Apr 15 2020 11:43:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36919 * 125.07816 * 2 1 4 4 O 1.35679 * 125.09125 * 359.93278 * 3 2 1 5 5 C 1.42904 * 116.99851 * 174.81174 * 4 3 2 6 6 H 1.09003 * 109.47211 * 20.91541 * 5 4 3 7 7 C 1.50703 * 109.46931 * 140.91236 * 5 4 3 8 8 H 1.07995 * 120.00329 * 0.02562 * 7 5 4 9 9 C 1.37880 * 119.99874 * 180.02562 * 7 5 4 10 10 N 1.31509 * 119.99873 * 359.97438 * 9 7 5 11 11 Si 1.86801 * 119.99716 * 179.97438 * 9 7 5 12 12 H 1.48497 * 109.47108 * 90.00040 * 11 9 7 13 13 H 1.48508 * 109.46867 * 209.99758 * 11 9 7 14 14 H 1.48496 * 109.47340 * 329.99705 * 11 9 7 15 15 C 1.52993 * 109.47678 * 260.91227 * 5 4 3 16 16 Cl 1.80302 * 109.46978 * 65.45963 * 15 5 4 17 17 C 1.34952 * 109.80879 * 179.97438 * 3 2 1 18 18 C 1.46435 * 106.98478 * 0.02562 * 17 3 2 19 19 C 1.39652 * 133.96065 * 180.02562 * 18 17 3 20 20 C 1.36665 * 119.76270 * 180.02562 * 19 18 17 21 21 C 1.38782 * 120.51704 * 359.95163 * 20 19 18 22 22 C 1.37854 * 120.65785 * 0.02804 * 21 20 19 23 23 C 1.38015 * 125.07894 * 179.97438 * 2 1 3 24 24 H 1.08999 * 109.47022 * 85.10886 * 1 2 3 25 25 H 1.08994 * 109.47010 * 205.10853 * 1 2 3 26 26 H 1.08996 * 109.46967 * 325.10936 * 1 2 3 27 27 H 0.97000 * 120.00055 * 180.02562 * 10 9 7 28 28 H 1.08996 * 109.47694 * 185.46304 * 15 5 4 29 29 H 1.09001 * 109.47208 * 305.46594 * 15 5 4 30 30 H 1.08006 * 126.50742 * 179.74208 * 17 3 2 31 31 H 1.08006 * 120.11557 * 0.02562 * 19 18 17 32 32 H 1.08002 * 119.74516 * 179.97438 * 20 19 18 33 33 H 1.07998 * 119.67423 * 180.02562 * 21 20 19 34 34 H 1.08000 * 120.09977 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2519 1.1205 0.0000 4 8 1.7916 2.3968 -0.0013 5 6 2.7643 3.4374 0.1141 6 1 3.7416 3.0556 -0.1814 7 6 2.3809 4.5852 -0.7841 8 1 1.4840 4.5262 -1.3827 9 6 3.1753 5.7107 -0.8415 10 7 4.2672 5.7827 -0.1121 11 14 2.7004 7.1331 -1.9553 12 1 1.8390 8.0825 -1.2058 13 1 3.9270 7.8337 -2.4137 14 1 1.9579 6.6141 -3.1319 15 6 2.8232 3.9221 1.5640 16 17 3.4362 2.5933 2.6174 17 6 3.5537 0.7651 0.0006 18 6 3.5976 -0.6986 0.0003 19 6 4.6314 -1.6375 0.0011 20 6 4.3360 -2.9718 0.0001 21 6 3.0164 -3.4015 -0.0008 22 6 1.9808 -2.4915 -0.0011 23 6 2.2582 -1.1295 0.0005 24 1 -0.3633 0.0876 -1.0239 25 1 -0.3633 -0.9305 0.4360 26 1 -0.3633 0.8429 0.5878 27 1 4.8258 6.5747 -0.1522 28 1 3.4929 4.7792 1.6337 29 1 1.8250 4.2134 1.8906 30 1 4.4022 1.4334 -0.0032 31 1 5.6607 -1.3102 0.0026 32 1 5.1357 -3.6977 0.0003 33 1 2.7985 -4.4593 -0.0012 34 1 0.9572 -2.8359 -0.0014 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001226234294.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:26 Heat of formation + Delta-G solvation = -0.218799 kcal Electronic energy + Delta-G solvation = -19350.693563 eV Core-core repulsion = 16274.797230 eV Total energy + Delta-G solvation = -3075.896332 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 279.077 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.30151 -39.64138 -37.58399 -36.53260 -35.31266 -33.60497 -31.53891 -31.04625 -29.03287 -27.31779 -27.07331 -24.21466 -22.84784 -22.29635 -20.79789 -19.08822 -18.53759 -17.65865 -17.29677 -16.81847 -16.41530 -15.65165 -15.35356 -15.25469 -15.06808 -14.76082 -14.25605 -13.87377 -13.78741 -13.70397 -13.44637 -13.14910 -12.99639 -12.89314 -12.60729 -12.37283 -12.09661 -11.78753 -11.68303 -11.51172 -11.22969 -10.92705 -10.64118 -10.33673 -8.83454 -8.40542 -8.28808 -6.56522 0.33991 0.77864 1.32226 1.39926 1.43966 1.54401 1.61808 1.86767 2.31407 2.88584 3.00865 3.08328 3.84770 3.93615 4.17836 4.26183 4.31048 4.36742 4.40528 4.51358 4.60965 4.62788 4.71634 4.81732 4.96424 5.08829 5.18444 5.25368 5.45289 5.61826 5.66579 5.77407 5.81605 5.96146 6.10044 6.35185 6.50747 6.88435 7.16502 8.67396 Molecular weight = 279.08amu Principal moments of inertia in cm(-1) A = 0.023196 B = 0.005215 C = 0.005000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1206.831543 B = 5367.768964 C = 5598.673311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.487 5.487 3 C 0.292 3.708 4 O -0.322 6.322 5 C 0.232 3.768 6 H 0.030 0.970 7 C -0.552 4.552 8 H 0.068 0.932 9 C 0.028 3.972 10 N -0.908 5.908 11 Si 0.980 3.020 12 H -0.266 1.266 13 H -0.276 1.276 14 H -0.270 1.270 15 C -0.025 4.025 16 Cl -0.222 7.222 17 C -0.306 4.306 18 C -0.105 4.105 19 C -0.103 4.103 20 C -0.140 4.140 21 C -0.111 4.111 22 C -0.123 4.123 23 C 0.074 3.926 24 H 0.075 0.925 25 H 0.110 0.890 26 H 0.075 0.925 27 H 0.277 0.723 28 H 0.120 0.880 29 H 0.077 0.923 30 H 0.124 0.876 31 H 0.121 0.879 32 H 0.149 0.851 33 H 0.160 0.840 34 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.403 -12.913 0.763 13.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.181 5.181 3 C 0.140 3.860 4 O -0.234 6.234 5 C 0.176 3.824 6 H 0.048 0.952 7 C -0.589 4.589 8 H 0.086 0.914 9 C -0.173 4.173 10 N -0.545 5.545 11 Si 0.803 3.197 12 H -0.191 1.191 13 H -0.201 1.201 14 H -0.194 1.194 15 C -0.088 4.088 16 Cl -0.197 7.197 17 C -0.331 4.331 18 C -0.109 4.109 19 C -0.121 4.121 20 C -0.158 4.158 21 C -0.129 4.129 22 C -0.144 4.144 23 C -0.029 4.029 24 H 0.094 0.906 25 H 0.129 0.871 26 H 0.094 0.906 27 H 0.087 0.913 28 H 0.138 0.862 29 H 0.096 0.904 30 H 0.142 0.858 31 H 0.139 0.861 32 H 0.166 0.834 33 H 0.177 0.823 34 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -4.736 -12.737 0.878 13.618 hybrid contribution 0.221 1.361 -0.272 1.406 sum -4.515 -11.376 0.606 12.255 Atomic orbital electron populations 1.22092 0.75280 1.05166 1.03732 1.43546 1.06916 1.01851 1.65756 1.18261 0.88414 0.81216 0.98111 1.85702 1.39400 1.10530 1.87804 1.20284 0.87567 0.82763 0.91784 0.95202 1.21251 1.11246 1.00738 1.25669 0.91414 1.25731 0.93992 1.00647 0.96948 1.69888 1.14012 1.30559 1.40032 0.85211 0.78077 0.77832 0.78570 1.19109 1.20106 1.19418 1.25371 1.01387 0.91289 0.90726 1.98647 1.90588 1.57651 1.72768 1.21200 0.94193 0.94215 1.23472 1.19217 0.93767 0.92473 1.05458 1.20471 0.97685 0.92955 1.01031 1.20939 0.97842 0.94619 1.02442 1.21157 0.91477 1.00105 1.00197 1.20318 1.01300 0.87434 1.05335 1.18410 0.89224 0.88415 1.06842 0.90644 0.87106 0.90594 0.91339 0.86215 0.90397 0.85795 0.86053 0.83366 0.82269 0.83775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.06 10.96 127.77 1.40 3.46 16 2 N -0.49 -17.79 3.19 -649.96 -2.07 -19.86 16 3 C 0.29 12.89 6.92 83.14 0.58 13.46 16 4 O -0.32 -15.48 9.63 -89.97 -0.87 -16.35 16 5 C 0.23 11.74 2.21 29.85 0.07 11.81 16 6 H 0.03 1.67 5.70 -2.39 -0.01 1.65 16 7 C -0.55 -29.27 8.89 25.60 0.23 -29.04 16 8 H 0.07 3.61 7.81 -2.91 -0.02 3.58 16 9 C 0.03 1.45 5.29 84.66 0.45 1.90 16 10 N -0.91 -47.77 11.29 21.45 0.24 -47.53 16 11 Si 0.98 40.41 29.54 68.60 2.03 42.43 16 12 H -0.27 -10.52 7.11 99.48 0.71 -9.82 16 13 H -0.28 -11.08 7.11 99.48 0.71 -10.37 16 14 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 15 C -0.02 -1.17 6.18 71.98 0.44 -0.72 16 16 Cl -0.22 -9.70 27.18 -2.72 -0.07 -9.78 16 17 C -0.31 -13.64 8.86 23.65 0.21 -13.43 16 18 C -0.10 -4.03 6.37 -20.20 -0.13 -4.16 16 19 C -0.10 -3.27 10.05 22.24 0.22 -3.05 16 20 C -0.14 -3.41 9.97 22.03 0.22 -3.19 16 21 C -0.11 -2.43 10.02 22.31 0.22 -2.21 16 22 C -0.12 -3.17 9.89 22.36 0.22 -2.95 16 23 C 0.07 2.55 6.81 38.95 0.27 2.81 16 24 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 25 H 0.11 2.12 7.85 -2.39 -0.02 2.10 16 26 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 27 H 0.28 13.67 8.31 -92.71 -0.77 12.90 16 28 H 0.12 6.03 5.94 -2.39 -0.01 6.02 16 29 H 0.08 3.52 8.14 -2.39 -0.02 3.50 16 30 H 0.12 5.96 6.54 -2.91 -0.02 5.94 16 31 H 0.12 3.59 8.06 -2.91 -0.02 3.56 16 32 H 0.15 2.60 8.06 -2.91 -0.02 2.58 16 33 H 0.16 2.22 8.06 -2.91 -0.02 2.20 16 34 H 0.14 2.73 7.91 -2.91 -0.02 2.71 16 Total: -1.00 -61.01 303.24 4.76 -56.25 By element: Atomic # 1 Polarization: 19.02 SS G_CDS: 1.11 Total: 20.13 kcal Atomic # 6 Polarization: -29.70 SS G_CDS: 4.40 Total: -25.30 kcal Atomic # 7 Polarization: -65.56 SS G_CDS: -1.83 Total: -67.39 kcal Atomic # 8 Polarization: -15.48 SS G_CDS: -0.87 Total: -16.35 kcal Atomic # 14 Polarization: 40.41 SS G_CDS: 2.03 Total: 42.43 kcal Atomic # 17 Polarization: -9.70 SS G_CDS: -0.07 Total: -9.78 kcal Total: -61.01 4.76 -56.25 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001226234294.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.032 kcal (2) G-P(sol) polarization free energy of solvation -61.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.251 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds