Wall clock time and date at job start Wed Apr 15 2020 11:43:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36799 * 125.07687 * 2 1 4 4 C 1.34247 * 109.93572 * 180.02562 * 3 2 1 5 5 C 1.46492 * 107.02225 * 359.97438 * 4 3 2 6 6 C 1.39671 * 133.93790 * 179.97438 * 5 4 3 7 7 C 1.38043 * 119.60566 * 179.77263 * 6 5 4 8 8 O 1.35985 * 119.86969 * 180.24853 * 7 6 5 9 9 C 1.42901 * 117.00147 * 176.75508 * 8 7 6 10 10 H 1.09001 * 109.47015 * 27.22319 * 9 8 7 11 11 C 1.50702 * 109.47070 * 147.22058 * 9 8 7 12 12 H 1.07997 * 120.00136 * 0.02562 * 11 9 8 13 13 C 1.37880 * 119.99682 * 180.02562 * 11 9 8 14 14 N 1.31511 * 120.00352 * 0.02562 * 13 11 9 15 15 Si 1.86803 * 119.99695 * 180.02562 * 13 11 9 16 16 H 1.48506 * 109.46980 * 0.02562 * 15 13 11 17 17 H 1.48502 * 109.46965 * 120.00014 * 15 13 11 18 18 H 1.48502 * 109.46978 * 240.00147 * 15 13 11 19 19 C 1.52996 * 109.47631 * 267.22353 * 9 8 7 20 20 Cl 1.80305 * 109.47075 * 64.99567 * 19 9 8 21 21 C 1.39272 * 120.26092 * 0.51845 * 7 6 5 22 22 C 1.37680 * 120.62483 * 359.47624 * 21 7 6 23 23 C 1.37901 * 125.07191 * 180.02562 * 2 1 3 24 24 H 1.08993 * 109.47088 * 269.97862 * 1 2 3 25 25 H 1.08999 * 109.47154 * 29.97843 * 1 2 3 26 26 H 1.09001 * 109.47349 * 149.97772 * 1 2 3 27 27 H 1.07997 * 125.03079 * 359.97438 * 3 2 1 28 28 H 1.08003 * 126.48913 * 179.97438 * 4 3 2 29 29 H 1.08002 * 120.20231 * 0.05684 * 6 5 4 30 30 H 0.97001 * 120.00228 * 180.02562 * 14 13 11 31 31 H 1.08994 * 109.47459 * 184.99373 * 19 9 8 32 32 H 1.09001 * 109.47382 * 305.00262 * 19 9 8 33 33 H 1.08004 * 119.68352 * 179.75793 * 21 7 6 34 34 H 1.08001 * 120.00388 * 180.23865 * 22 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2511 1.1195 0.0000 4 6 3.5470 0.7689 -0.0006 5 6 3.5951 -0.6952 -0.0003 6 6 4.6321 -1.6309 -0.0011 7 6 4.3345 -2.9788 0.0042 8 8 5.3400 -3.8944 0.0086 9 6 4.9638 -5.2708 0.0860 10 1 3.9696 -5.4003 -0.3417 11 6 5.9543 -6.1063 -0.6834 12 1 6.7879 -5.6336 -1.1812 13 6 5.7961 -7.4743 -0.7516 14 7 4.7807 -8.0500 -0.1457 15 14 7.0243 -8.5101 -1.7046 16 1 8.0670 -7.6287 -2.2890 17 1 7.6617 -9.4899 -0.7886 18 1 6.3211 -9.2350 -2.7933 19 6 4.9508 -5.7145 1.5501 20 17 3.6636 -4.8174 2.4386 21 6 3.0085 -3.4048 -0.0006 22 6 1.9784 -2.4914 0.0002 23 6 2.2574 -1.1286 -0.0005 24 1 -0.3633 -0.0004 1.0276 25 1 -0.3633 0.8902 -0.5135 26 1 -0.3634 -0.8898 -0.5142 27 1 1.8837 2.1351 -0.0004 28 1 4.3938 1.4393 -0.0011 29 1 5.6608 -1.3018 -0.0012 30 1 4.6697 -9.0124 -0.1934 31 1 4.7509 -6.7846 1.6038 32 1 5.9196 -5.5026 2.0026 33 1 2.7863 -4.4618 -0.0004 34 1 0.9538 -2.8329 0.0003 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001229113777.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:33 Heat of formation + Delta-G solvation = 15.215185 kcal Electronic energy + Delta-G solvation = -19165.381117 eV Core-core repulsion = 16090.154053 eV Total energy + Delta-G solvation = -3075.227065 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 279.077 amu Computer time = 1.50 seconds Orbital eigenvalues (eV) -40.85925 -38.57708 -35.49702 -34.67345 -33.31795 -32.54815 -30.06600 -28.73373 -28.09932 -25.80155 -25.27824 -22.59681 -21.87556 -20.00928 -19.89275 -17.13666 -16.97872 -16.49206 -15.54102 -15.12524 -15.04836 -14.21635 -14.19190 -13.72623 -13.23617 -12.90165 -12.82334 -12.56852 -12.37681 -12.15735 -11.99344 -11.92870 -11.58015 -11.20767 -11.01718 -10.87795 -10.47816 -10.30643 -10.08835 -9.51596 -9.31417 -9.14819 -8.92210 -8.62269 -7.43244 -6.80133 -6.40219 -4.46987 1.58860 2.28465 3.04115 3.07592 3.13852 3.23138 3.28912 3.45891 4.09815 4.45185 4.54135 4.79261 4.95354 4.99517 5.16276 5.25059 5.36281 5.48822 5.72946 5.93497 5.98360 6.09236 6.23319 6.32993 6.35483 6.58245 6.64697 6.91676 7.07674 7.09772 7.18779 7.28629 7.55506 7.60201 7.64660 7.82426 8.44651 8.77014 9.20994 10.66940 Molecular weight = 279.08amu Principal moments of inertia in cm(-1) A = 0.027714 B = 0.004747 C = 0.004501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1010.080090 B = 5897.484247 C = 6219.878337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.494 5.494 3 C 0.044 3.956 4 C -0.212 4.212 5 C -0.073 4.073 6 C -0.137 4.137 7 C 0.136 3.864 8 O -0.313 6.313 9 C 0.205 3.795 10 H 0.050 0.950 11 C -0.518 4.518 12 H 0.077 0.923 13 C 0.063 3.937 14 N -0.890 5.890 15 Si 0.915 3.085 16 H -0.268 1.268 17 H -0.280 1.280 18 H -0.280 1.280 19 C -0.035 4.035 20 Cl -0.241 7.241 21 C -0.153 4.153 22 C -0.100 4.100 23 C 0.053 3.947 24 H 0.062 0.938 25 H 0.076 0.924 26 H 0.077 0.923 27 H 0.161 0.839 28 H 0.141 0.859 29 H 0.122 0.878 30 H 0.271 0.729 31 H 0.132 0.868 32 H 0.074 0.926 33 H 0.141 0.859 34 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.897 12.028 0.837 13.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.179 5.179 3 C -0.082 4.082 4 C -0.238 4.238 5 C -0.077 4.077 6 C -0.157 4.157 7 C 0.089 3.911 8 O -0.226 6.226 9 C 0.150 3.850 10 H 0.067 0.933 11 C -0.556 4.556 12 H 0.095 0.905 13 C -0.140 4.140 14 N -0.528 5.528 15 Si 0.741 3.259 16 H -0.193 1.193 17 H -0.206 1.206 18 H -0.206 1.206 19 C -0.098 4.098 20 Cl -0.215 7.215 21 C -0.172 4.172 22 C -0.121 4.121 23 C -0.050 4.050 24 H 0.081 0.919 25 H 0.095 0.905 26 H 0.096 0.904 27 H 0.178 0.822 28 H 0.159 0.841 29 H 0.140 0.860 30 H 0.081 0.919 31 H 0.150 0.850 32 H 0.092 0.908 33 H 0.159 0.841 34 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -7.209 11.921 0.926 13.962 hybrid contribution 0.180 -0.723 -0.247 0.785 sum -7.029 11.198 0.679 13.239 Atomic orbital electron populations 1.21807 0.78064 1.03592 1.02389 1.43668 1.05227 1.04400 1.64645 1.21614 0.90582 0.90720 1.05258 1.21554 0.95664 0.92888 1.13656 1.18780 0.91484 0.92931 1.04550 1.19509 0.98263 0.89171 1.08767 1.18740 0.87494 0.89575 0.95302 1.86137 1.31831 1.17695 1.86966 1.20478 0.98783 0.74815 0.90907 0.93252 1.21088 1.11601 0.91064 1.31873 0.90506 1.24977 0.95990 0.97567 0.95462 1.69808 1.28877 1.11501 1.42589 0.86147 0.80597 0.79683 0.79433 1.19252 1.20568 1.20553 1.25761 0.89117 1.00932 0.93998 1.98643 1.61069 1.80835 1.80933 1.21266 0.91755 1.00538 1.03672 1.19673 0.98715 0.88837 1.04876 1.18117 0.90006 0.87969 1.08950 0.91905 0.90523 0.90443 0.82206 0.84119 0.85959 0.91943 0.85010 0.90780 0.84147 0.87010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.78 11.03 59.85 0.66 1.44 16 2 N -0.49 -6.82 3.18 -121.78 -0.39 -7.20 16 3 C 0.04 0.55 11.29 -16.74 -0.19 0.36 16 4 C -0.21 -3.09 11.08 -37.67 -0.42 -3.51 16 5 C -0.07 -1.32 6.37 -105.14 -0.67 -1.99 16 6 C -0.14 -2.71 10.03 -39.12 -0.39 -3.10 16 7 C 0.14 2.94 5.95 -39.27 -0.23 2.71 16 8 O -0.31 -7.49 9.73 -19.69 -0.19 -7.68 16 9 C 0.21 5.06 2.19 -27.88 -0.06 5.00 16 10 H 0.05 1.28 5.38 -51.93 -0.28 1.00 16 11 C -0.52 -13.64 8.89 -34.44 -0.31 -13.95 16 12 H 0.08 2.05 7.81 -52.49 -0.41 1.64 16 13 C 0.06 1.61 5.29 -17.82 -0.09 1.51 16 14 N -0.89 -23.20 11.30 55.43 0.63 -22.58 16 15 Si 0.91 19.99 29.54 -169.99 -5.02 14.97 16 16 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 17 H -0.28 -6.04 7.11 56.52 0.40 -5.63 16 18 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 19 C -0.04 -0.82 6.17 37.16 0.23 -0.59 16 20 Cl -0.24 -5.09 25.56 -51.86 -1.33 -6.41 16 21 C -0.15 -3.11 6.99 -39.40 -0.28 -3.38 16 22 C -0.10 -1.79 9.94 -39.46 -0.39 -2.18 16 23 C 0.05 0.91 6.81 -83.92 -0.57 0.34 16 24 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 25 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 26 H 0.08 0.70 8.10 -51.93 -0.42 0.28 16 27 H 0.16 1.34 8.06 -52.49 -0.42 0.92 16 28 H 0.14 1.72 8.06 -52.48 -0.42 1.30 16 29 H 0.12 2.25 8.06 -52.49 -0.42 1.83 16 30 H 0.27 6.67 8.31 -40.82 -0.34 6.33 16 31 H 0.13 3.25 5.95 -51.93 -0.31 2.94 16 32 H 0.07 1.68 8.14 -51.93 -0.42 1.26 16 33 H 0.14 3.00 5.06 -52.48 -0.27 2.73 16 34 H 0.11 1.71 8.06 -52.49 -0.42 1.28 16 LS Contribution 299.93 15.07 4.52 4.52 Total: -1.00 -28.52 299.93 -8.27 -36.80 By element: Atomic # 1 Polarization: 8.72 SS G_CDS: -3.78 Total: 4.94 kcal Atomic # 6 Polarization: -14.64 SS G_CDS: -2.71 Total: -17.35 kcal Atomic # 7 Polarization: -30.02 SS G_CDS: 0.24 Total: -29.78 kcal Atomic # 8 Polarization: -7.49 SS G_CDS: -0.19 Total: -7.68 kcal Atomic # 14 Polarization: 19.99 SS G_CDS: -5.02 Total: 14.97 kcal Atomic # 17 Polarization: -5.09 SS G_CDS: -1.33 Total: -6.41 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -28.52 -8.27 -36.80 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001229113777.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.011 kcal (2) G-P(sol) polarization free energy of solvation -28.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.796 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.50 seconds