Wall clock time and date at job start Wed Apr 15 2020 11:43:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36799 * 125.07687 * 2 1 4 4 C 1.34247 * 109.93572 * 180.02562 * 3 2 1 5 5 C 1.46492 * 107.02225 * 359.97438 * 4 3 2 6 6 C 1.39671 * 133.93790 * 179.97438 * 5 4 3 7 7 C 1.38043 * 119.60566 * 179.77263 * 6 5 4 8 8 O 1.35985 * 119.86969 * 180.24853 * 7 6 5 9 9 C 1.42901 * 117.00147 * 176.75508 * 8 7 6 10 10 H 1.09001 * 109.47015 * 27.22319 * 9 8 7 11 11 C 1.50702 * 109.47070 * 147.22058 * 9 8 7 12 12 H 1.07997 * 120.00136 * 0.02562 * 11 9 8 13 13 C 1.37880 * 119.99682 * 180.02562 * 11 9 8 14 14 N 1.31511 * 120.00352 * 0.02562 * 13 11 9 15 15 Si 1.86803 * 119.99695 * 180.02562 * 13 11 9 16 16 H 1.48506 * 109.46980 * 0.02562 * 15 13 11 17 17 H 1.48502 * 109.46965 * 120.00014 * 15 13 11 18 18 H 1.48502 * 109.46978 * 240.00147 * 15 13 11 19 19 C 1.52996 * 109.47631 * 267.22353 * 9 8 7 20 20 Cl 1.80305 * 109.47075 * 64.99567 * 19 9 8 21 21 C 1.39272 * 120.26092 * 0.51845 * 7 6 5 22 22 C 1.37680 * 120.62483 * 359.47624 * 21 7 6 23 23 C 1.37901 * 125.07191 * 180.02562 * 2 1 3 24 24 H 1.08993 * 109.47088 * 269.97862 * 1 2 3 25 25 H 1.08999 * 109.47154 * 29.97843 * 1 2 3 26 26 H 1.09001 * 109.47349 * 149.97772 * 1 2 3 27 27 H 1.07997 * 125.03079 * 359.97438 * 3 2 1 28 28 H 1.08003 * 126.48913 * 179.97438 * 4 3 2 29 29 H 1.08002 * 120.20231 * 0.05684 * 6 5 4 30 30 H 0.97001 * 120.00228 * 180.02562 * 14 13 11 31 31 H 1.08994 * 109.47459 * 184.99373 * 19 9 8 32 32 H 1.09001 * 109.47382 * 305.00262 * 19 9 8 33 33 H 1.08004 * 119.68352 * 179.75793 * 21 7 6 34 34 H 1.08001 * 120.00388 * 180.23865 * 22 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2511 1.1195 0.0000 4 6 3.5470 0.7689 -0.0006 5 6 3.5951 -0.6952 -0.0003 6 6 4.6321 -1.6309 -0.0011 7 6 4.3345 -2.9788 0.0042 8 8 5.3400 -3.8944 0.0086 9 6 4.9638 -5.2708 0.0860 10 1 3.9696 -5.4003 -0.3417 11 6 5.9543 -6.1063 -0.6834 12 1 6.7879 -5.6336 -1.1812 13 6 5.7961 -7.4743 -0.7516 14 7 4.7807 -8.0500 -0.1457 15 14 7.0243 -8.5101 -1.7046 16 1 8.0670 -7.6287 -2.2890 17 1 7.6617 -9.4899 -0.7886 18 1 6.3211 -9.2350 -2.7933 19 6 4.9508 -5.7145 1.5501 20 17 3.6636 -4.8174 2.4386 21 6 3.0085 -3.4048 -0.0006 22 6 1.9784 -2.4914 0.0002 23 6 2.2574 -1.1286 -0.0005 24 1 -0.3633 -0.0004 1.0276 25 1 -0.3633 0.8902 -0.5135 26 1 -0.3634 -0.8898 -0.5142 27 1 1.8837 2.1351 -0.0004 28 1 4.3938 1.4393 -0.0011 29 1 5.6608 -1.3018 -0.0012 30 1 4.6697 -9.0124 -0.1934 31 1 4.7509 -6.7846 1.6038 32 1 5.9196 -5.5026 2.0026 33 1 2.7863 -4.4618 -0.0004 34 1 0.9538 -2.8329 0.0003 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001229113777.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:31 Heat of formation + Delta-G solvation = 0.716600 kcal Electronic energy + Delta-G solvation = -19166.009823 eV Core-core repulsion = 16090.154053 eV Total energy + Delta-G solvation = -3075.855770 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 279.077 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.09287 -40.20412 -37.04542 -36.39502 -35.21815 -33.67572 -31.74409 -30.23995 -29.44035 -27.27396 -26.80814 -24.14317 -23.37813 -21.57469 -21.04602 -18.88084 -18.62987 -17.77508 -17.02730 -16.77284 -16.21719 -15.85350 -15.81370 -15.04602 -14.85027 -14.46085 -13.98756 -13.91411 -13.67338 -13.56454 -13.45752 -13.30387 -12.95964 -12.92786 -12.81055 -12.57162 -12.18513 -11.84877 -11.69043 -11.32484 -11.11741 -10.70545 -10.54423 -10.37875 -8.73881 -8.36960 -8.20504 -6.51259 0.23363 0.82304 1.39522 1.43724 1.56669 1.62513 1.90521 2.04540 2.30336 2.79938 2.99378 3.03145 3.84237 4.00494 4.06048 4.18333 4.33629 4.38872 4.47768 4.49861 4.54714 4.75730 4.76730 4.86144 4.88446 5.07572 5.20820 5.25071 5.41673 5.53275 5.65999 5.78890 5.89744 5.90745 6.28517 6.53014 6.57628 6.93401 7.22348 8.71093 Molecular weight = 279.08amu Principal moments of inertia in cm(-1) A = 0.027714 B = 0.004747 C = 0.004501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1010.080090 B = 5897.484247 C = 6219.878337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.492 5.492 3 C 0.073 3.927 4 C -0.239 4.239 5 C -0.092 4.092 6 C -0.148 4.148 7 C 0.104 3.896 8 O -0.333 6.333 9 C 0.212 3.788 10 H 0.032 0.968 11 C -0.548 4.548 12 H 0.064 0.936 13 C 0.027 3.973 14 N -0.909 5.909 15 Si 0.978 3.022 16 H -0.269 1.269 17 H -0.270 1.270 18 H -0.274 1.274 19 C -0.025 4.025 20 Cl -0.222 7.222 21 C -0.173 4.173 22 C -0.093 4.093 23 C 0.041 3.959 24 H 0.075 0.925 25 H 0.111 0.889 26 H 0.078 0.922 27 H 0.213 0.787 28 H 0.160 0.840 29 H 0.123 0.877 30 H 0.276 0.724 31 H 0.118 0.882 32 H 0.073 0.927 33 H 0.122 0.878 34 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.425 14.142 0.705 16.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.177 5.177 3 C -0.053 4.053 4 C -0.264 4.264 5 C -0.097 4.097 6 C -0.168 4.168 7 C 0.058 3.942 8 O -0.248 6.248 9 C 0.156 3.844 10 H 0.049 0.951 11 C -0.585 4.585 12 H 0.082 0.918 13 C -0.174 4.174 14 N -0.547 5.547 15 Si 0.801 3.199 16 H -0.194 1.194 17 H -0.195 1.195 18 H -0.199 1.199 19 C -0.088 4.088 20 Cl -0.196 7.196 21 C -0.192 4.192 22 C -0.113 4.113 23 C -0.064 4.064 24 H 0.094 0.906 25 H 0.130 0.870 26 H 0.097 0.903 27 H 0.230 0.770 28 H 0.178 0.822 29 H 0.141 0.859 30 H 0.085 0.915 31 H 0.136 0.864 32 H 0.091 0.909 33 H 0.140 0.860 34 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -8.773 14.058 0.804 16.590 hybrid contribution 0.480 -1.149 -0.184 1.259 sum -8.293 12.908 0.620 15.355 Atomic orbital electron populations 1.22176 0.75138 1.05504 1.03845 1.44067 1.07057 1.03452 1.63090 1.22431 0.89640 0.92278 1.00996 1.21882 0.97758 0.91156 1.15601 1.19216 0.91490 0.94814 1.04196 1.19668 0.99124 0.88936 1.09057 1.18986 0.87615 0.89773 0.97843 1.86063 1.33178 1.17540 1.87980 1.20236 0.97387 0.75419 0.91313 0.95099 1.21289 1.11978 0.92106 1.33160 0.91777 1.25719 0.97520 0.98186 0.95979 1.69888 1.29863 1.11994 1.42944 0.85197 0.78376 0.78002 0.78292 1.19369 1.19548 1.19889 1.25410 0.89630 1.00093 0.93703 1.98632 1.60189 1.80400 1.80342 1.21080 0.92002 1.00054 1.06107 1.19849 0.99115 0.89109 1.03272 1.18227 0.90705 0.88737 1.08736 0.90616 0.87009 0.90321 0.77005 0.82221 0.85892 0.91473 0.86425 0.90872 0.86036 0.84654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.04 11.03 127.77 1.41 2.45 16 2 N -0.49 -11.73 3.18 -539.19 -1.72 -13.45 16 3 C 0.07 1.48 11.29 83.01 0.94 2.42 16 4 C -0.24 -6.36 11.08 23.51 0.26 -6.09 16 5 C -0.09 -3.28 6.37 -20.20 -0.13 -3.41 16 6 C -0.15 -6.05 10.03 22.57 0.23 -5.82 16 7 C 0.10 4.71 5.95 22.47 0.13 4.85 16 8 O -0.33 -16.93 9.73 -93.38 -0.91 -17.84 16 9 C 0.21 11.02 2.19 29.85 0.07 11.08 16 10 H 0.03 1.72 5.38 -2.39 -0.01 1.71 16 11 C -0.55 -30.07 8.89 25.60 0.23 -29.84 16 12 H 0.06 3.58 7.81 -2.91 -0.02 3.56 16 13 C 0.03 1.41 5.29 84.66 0.45 1.86 16 14 N -0.91 -48.38 11.30 21.45 0.24 -48.14 16 15 Si 0.98 41.41 29.54 68.60 2.03 43.44 16 16 H -0.27 -11.36 7.11 99.48 0.71 -10.66 16 17 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16 18 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 19 C -0.03 -1.23 6.17 71.98 0.44 -0.78 16 20 Cl -0.22 -9.61 25.56 -2.72 -0.07 -9.68 16 21 C -0.17 -7.30 6.99 22.39 0.16 -7.14 16 22 C -0.09 -3.29 9.94 22.35 0.22 -3.07 16 23 C 0.04 1.34 6.81 38.98 0.27 1.61 16 24 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 25 H 0.11 0.85 8.14 -2.39 -0.02 0.83 16 26 H 0.08 1.13 8.10 -2.39 -0.02 1.11 16 27 H 0.21 2.07 8.06 -2.91 -0.02 2.05 16 28 H 0.16 3.49 8.06 -2.91 -0.02 3.47 16 29 H 0.12 4.77 8.06 -2.91 -0.02 4.74 16 30 H 0.28 13.70 8.31 -92.71 -0.77 12.93 16 31 H 0.12 6.02 5.95 -2.39 -0.01 6.01 16 32 H 0.07 3.47 8.14 -2.39 -0.02 3.45 16 33 H 0.12 5.52 5.06 -2.91 -0.01 5.50 16 34 H 0.14 3.97 8.06 -2.91 -0.02 3.95 16 Total: -1.00 -64.18 299.93 5.36 -58.82 By element: Atomic # 1 Polarization: 17.62 SS G_CDS: 1.11 Total: 18.73 kcal Atomic # 6 Polarization: -36.56 SS G_CDS: 4.67 Total: -31.90 kcal Atomic # 7 Polarization: -60.11 SS G_CDS: -1.47 Total: -61.59 kcal Atomic # 8 Polarization: -16.93 SS G_CDS: -0.91 Total: -17.84 kcal Atomic # 14 Polarization: 41.41 SS G_CDS: 2.03 Total: 43.44 kcal Atomic # 17 Polarization: -9.61 SS G_CDS: -0.07 Total: -9.68 kcal Total: -64.18 5.36 -58.82 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001229113777.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.540 kcal (2) G-P(sol) polarization free energy of solvation -64.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.823 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds