Wall clock time and date at job start Wed Apr 15 2020 11:43:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46509 * 119.99901 * 2 1 4 4 C 1.50699 * 109.47351 * 270.00315 * 3 2 1 5 5 H 1.08002 * 119.99917 * 0.02562 * 4 3 2 6 6 C 1.37873 * 119.99926 * 180.02562 * 4 3 2 7 7 N 1.31506 * 119.99792 * 359.97438 * 6 4 3 8 8 Si 1.86799 * 119.99932 * 180.02562 * 6 4 3 9 9 H 1.48503 * 109.47373 * 59.99241 * 8 6 4 10 10 H 1.48500 * 109.47166 * 179.97438 * 8 6 4 11 11 H 1.48501 * 109.46771 * 299.99691 * 8 6 4 12 12 C 1.34777 * 120.00091 * 180.02562 * 2 1 3 13 13 O 1.21280 * 119.99902 * 180.02562 * 12 2 1 14 14 C 1.50700 * 119.99533 * 359.97438 * 12 2 1 15 15 C 1.50705 * 109.46664 * 180.02562 * 14 12 2 16 16 C 1.34331 * 125.80755 * 124.99939 * 15 14 12 17 17 N 1.38926 * 107.12220 * 179.73806 * 16 15 14 18 18 C 1.37486 * 139.53714 * 180.21625 * 17 16 15 19 19 C 1.30909 * 116.32362 * 180.02562 * 18 17 16 20 20 S 1.75773 * 109.81852 * 359.97438 * 19 18 17 21 21 C 1.35147 * 106.52943 * 0.24591 * 17 16 15 22 22 N 1.32356 * 108.82339 * 359.97438 * 21 17 16 23 23 H 1.09006 * 109.47348 * 269.99788 * 1 2 3 24 24 H 1.08998 * 109.47695 * 29.99500 * 1 2 3 25 25 H 1.08998 * 109.47503 * 149.99337 * 1 2 3 26 26 H 1.09005 * 109.46734 * 30.00591 * 3 2 1 27 27 H 1.08995 * 109.46492 * 150.00106 * 3 2 1 28 28 H 0.97006 * 119.99562 * 180.02562 * 7 6 4 29 29 H 1.08991 * 109.47398 * 60.00743 * 14 12 2 30 30 H 1.08999 * 109.47454 * 300.00087 * 14 12 2 31 31 H 1.08002 * 126.44106 * 0.02562 * 16 15 14 32 32 H 1.08003 * 121.83610 * 0.04928 * 18 17 16 33 33 H 1.08004 * 125.08820 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4486 1.7039 -1.4208 5 1 2.0973 1.0964 -2.2417 6 6 3.1268 2.8776 -1.6726 7 7 3.5541 3.6176 -0.6730 8 14 3.4374 3.4173 -3.4338 9 1 2.1396 3.5956 -4.1332 10 1 4.1800 4.7033 -3.4337 11 1 4.2392 2.3822 -4.1345 12 6 2.1389 -1.1672 -0.0005 13 8 3.3517 -1.1672 -0.0001 14 6 1.3853 -2.4722 -0.0005 15 6 2.3646 -3.6177 -0.0005 16 6 2.4004 -4.6211 0.8919 17 7 3.4459 -5.4587 0.5238 18 6 4.0490 -6.6228 0.9378 19 6 5.0611 -7.0394 0.2197 20 16 5.3447 -5.9277 -1.1120 21 6 4.0029 -4.9156 -0.5813 22 7 3.3485 -3.8070 -0.8885 23 1 -0.3634 0.0000 1.0277 24 1 -0.3634 0.8900 -0.5137 25 1 -0.3634 -0.8899 -0.5139 26 1 1.6084 2.0284 0.5140 27 1 3.1498 1.1384 0.5138 28 1 4.0309 4.4436 -0.8503 29 1 0.7584 -2.5298 -0.8902 30 1 0.7589 -2.5302 0.8897 31 1 1.7378 -4.7544 1.7342 32 1 3.7063 -7.1640 1.8074 33 1 5.6359 -7.9325 0.4161 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000073002349.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:08 Heat of formation + Delta-G solvation = 73.808709 kcal Electronic energy + Delta-G solvation = -18779.257861 eV Core-core repulsion = 15740.908060 eV Total energy + Delta-G solvation = -3038.349801 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 279.078 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -42.57716 -38.78650 -36.61547 -34.61310 -32.59193 -31.42419 -30.68688 -28.16965 -26.86909 -25.48055 -24.07653 -22.82451 -20.79741 -20.57013 -18.38084 -18.16242 -16.47085 -16.32962 -15.99341 -15.62348 -15.30631 -14.95347 -14.56712 -14.17647 -14.05747 -13.41500 -12.84849 -12.56276 -12.46712 -12.06046 -11.88975 -11.66674 -11.44557 -11.35179 -11.09144 -10.80424 -10.48092 -10.46777 -10.05853 -9.90621 -9.53520 -8.91502 -8.57559 -8.33925 -7.70644 -7.50569 -5.94939 -3.98928 0.83554 0.87819 1.55987 2.18587 2.52361 2.98592 3.39328 3.43188 3.47379 3.60938 4.14228 4.36855 4.54003 4.54851 4.86736 4.98811 5.22967 5.29072 5.37658 5.45572 5.61344 5.70166 5.84657 6.01843 6.03835 6.29187 6.52862 6.83311 7.16819 7.54928 7.66899 7.89884 8.02408 8.34380 8.54774 9.01662 9.26573 9.66004 11.13145 Molecular weight = 279.08amu Principal moments of inertia in cm(-1) A = 0.023786 B = 0.004158 C = 0.003722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1176.904131 B = 6732.935954 C = 7520.312393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.608 5.608 3 C 0.247 3.753 4 C -0.524 4.524 5 H 0.057 0.943 6 C 0.060 3.940 7 N -0.897 5.897 8 Si 0.897 3.103 9 H -0.277 1.277 10 H -0.287 1.287 11 H -0.276 1.276 12 C 0.507 3.493 13 O -0.521 6.521 14 C -0.060 4.060 15 C 0.077 3.923 16 C -0.056 4.056 17 N -0.412 5.412 18 C 0.054 3.946 19 C -0.232 4.232 20 S 0.181 5.819 21 C 0.134 3.866 22 N -0.418 5.418 23 H 0.043 0.957 24 H 0.073 0.927 25 H 0.056 0.944 26 H 0.031 0.969 27 H 0.042 0.958 28 H 0.263 0.737 29 H 0.104 0.896 30 H 0.102 0.898 31 H 0.183 0.817 32 H 0.179 0.821 33 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.009 -22.445 4.877 23.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.341 5.341 3 C 0.128 3.872 4 C -0.563 4.563 5 H 0.075 0.925 6 C -0.141 4.141 7 N -0.537 5.537 8 Si 0.725 3.275 9 H -0.203 1.203 10 H -0.212 1.212 11 H -0.201 1.201 12 C 0.292 3.708 13 O -0.396 6.396 14 C -0.101 4.101 15 C -0.055 4.055 16 C -0.187 4.187 17 N -0.093 5.093 18 C -0.076 4.076 19 C -0.370 4.370 20 S 0.430 5.570 21 C -0.232 4.232 22 N -0.140 5.140 23 H 0.061 0.939 24 H 0.091 0.909 25 H 0.075 0.925 26 H 0.049 0.951 27 H 0.060 0.940 28 H 0.072 0.928 29 H 0.122 0.878 30 H 0.120 0.880 31 H 0.200 0.800 32 H 0.196 0.804 33 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges -2.177 -21.709 3.266 22.061 hybrid contribution -1.035 -0.185 0.914 1.393 sum -3.212 -21.894 4.181 22.520 Atomic orbital electron populations 1.21629 0.81634 1.02568 1.00236 1.48138 1.06011 1.07715 1.72249 1.19240 0.92483 0.78074 0.97377 1.21434 1.36276 1.06112 0.92429 0.92480 1.24925 0.95394 0.96434 0.97370 1.69927 1.38595 1.14395 1.30747 0.86568 0.78346 0.77743 0.84834 1.20277 1.21242 1.20129 1.19995 0.88195 0.84525 0.78102 1.90712 1.13649 1.86800 1.48462 1.20101 0.95760 0.89841 1.04434 1.20132 0.96526 0.95820 0.92998 1.22413 0.96346 0.94445 1.05497 1.43868 1.24761 1.18194 1.22436 1.20325 0.96429 0.88407 1.02458 1.25049 1.03522 1.06896 1.01490 1.84785 1.28372 1.15036 1.28770 1.26234 1.04475 0.99035 0.93503 1.70598 1.06167 1.10372 1.26867 0.93861 0.90857 0.92486 0.95118 0.93990 0.92778 0.87752 0.87980 0.80007 0.80422 0.78934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.33 10.24 59.84 0.61 1.94 16 2 N -0.61 -13.44 2.86 -182.95 -0.52 -13.96 16 3 C 0.25 6.76 5.16 -5.19 -0.03 6.73 16 4 C -0.52 -15.55 9.39 -34.44 -0.32 -15.87 16 5 H 0.06 1.70 7.81 -52.49 -0.41 1.29 16 6 C 0.06 1.79 5.46 -17.82 -0.10 1.70 16 7 N -0.90 -27.59 13.29 55.43 0.74 -26.85 16 8 Si 0.90 22.78 29.54 -169.99 -5.02 17.76 16 9 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 10 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 11 H -0.28 -7.09 7.11 56.52 0.40 -6.69 16 12 C 0.51 11.25 7.66 -10.99 -0.08 11.17 16 13 O -0.52 -14.33 15.14 5.56 0.08 -14.25 16 14 C -0.06 -0.95 4.81 -29.03 -0.14 -1.09 16 15 C 0.08 1.33 5.84 -83.08 -0.49 0.84 16 16 C -0.06 -0.76 11.91 -15.71 -0.19 -0.94 16 17 N -0.41 -5.59 3.19 -63.77 -0.20 -5.80 16 18 C 0.05 0.49 11.26 -16.71 -0.19 0.30 16 19 C -0.23 -1.84 11.11 29.04 0.32 -1.52 16 20 S 0.18 2.15 23.37 -107.50 -2.51 -0.37 16 21 C 0.13 2.22 8.93 -88.71 -0.79 1.43 16 22 N -0.42 -8.45 10.68 -9.77 -0.10 -8.56 16 23 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 24 H 0.07 1.22 8.07 -51.93 -0.42 0.80 16 25 H 0.06 0.73 6.44 -51.93 -0.33 0.39 16 26 H 0.03 0.84 8.07 -51.93 -0.42 0.42 16 27 H 0.04 1.30 7.42 -51.93 -0.39 0.91 16 28 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 29 H 0.10 1.47 7.40 -51.93 -0.38 1.09 16 30 H 0.10 1.18 8.07 -51.93 -0.42 0.76 16 31 H 0.18 1.67 8.06 -52.49 -0.42 1.24 16 32 H 0.18 0.90 8.06 -52.48 -0.42 0.48 16 33 H 0.19 0.73 8.06 -52.48 -0.42 0.31 16 LS Contribution 305.06 15.07 4.60 4.60 Total: -1.00 -39.45 305.06 -7.93 -47.38 By element: Atomic # 1 Polarization: -1.05 SS G_CDS: -3.60 Total: -4.65 kcal Atomic # 6 Polarization: 6.08 SS G_CDS: -1.39 Total: 4.70 kcal Atomic # 7 Polarization: -55.08 SS G_CDS: -0.09 Total: -55.17 kcal Atomic # 8 Polarization: -14.33 SS G_CDS: 0.08 Total: -14.25 kcal Atomic # 14 Polarization: 22.78 SS G_CDS: -5.02 Total: 17.76 kcal Atomic # 16 Polarization: 2.15 SS G_CDS: -2.51 Total: -0.37 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -39.45 -7.93 -47.38 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000073002349.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.194 kcal (2) G-P(sol) polarization free energy of solvation -39.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.385 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds