Wall clock time and date at job start Wed Apr 15 2020 11:43:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46509 * 119.99901 * 2 1 4 4 C 1.50699 * 109.47351 * 270.00315 * 3 2 1 5 5 H 1.08002 * 119.99917 * 0.02562 * 4 3 2 6 6 C 1.37873 * 119.99926 * 180.02562 * 4 3 2 7 7 N 1.31506 * 119.99792 * 359.97438 * 6 4 3 8 8 Si 1.86799 * 119.99932 * 180.02562 * 6 4 3 9 9 H 1.48503 * 109.47373 * 59.99241 * 8 6 4 10 10 H 1.48500 * 109.47166 * 179.97438 * 8 6 4 11 11 H 1.48501 * 109.46771 * 299.99691 * 8 6 4 12 12 C 1.34777 * 120.00091 * 180.02562 * 2 1 3 13 13 O 1.21280 * 119.99902 * 180.02562 * 12 2 1 14 14 C 1.50700 * 119.99533 * 359.97438 * 12 2 1 15 15 C 1.50705 * 109.46664 * 180.02562 * 14 12 2 16 16 C 1.34331 * 125.80755 * 124.99939 * 15 14 12 17 17 N 1.38926 * 107.12220 * 179.73806 * 16 15 14 18 18 C 1.37486 * 139.53714 * 180.21625 * 17 16 15 19 19 C 1.30909 * 116.32362 * 180.02562 * 18 17 16 20 20 S 1.75773 * 109.81852 * 359.97438 * 19 18 17 21 21 C 1.35147 * 106.52943 * 0.24591 * 17 16 15 22 22 N 1.32356 * 108.82339 * 359.97438 * 21 17 16 23 23 H 1.09006 * 109.47348 * 269.99788 * 1 2 3 24 24 H 1.08998 * 109.47695 * 29.99500 * 1 2 3 25 25 H 1.08998 * 109.47503 * 149.99337 * 1 2 3 26 26 H 1.09005 * 109.46734 * 30.00591 * 3 2 1 27 27 H 1.08995 * 109.46492 * 150.00106 * 3 2 1 28 28 H 0.97006 * 119.99562 * 180.02562 * 7 6 4 29 29 H 1.08991 * 109.47398 * 60.00743 * 14 12 2 30 30 H 1.08999 * 109.47454 * 300.00087 * 14 12 2 31 31 H 1.08002 * 126.44106 * 0.02562 * 16 15 14 32 32 H 1.08003 * 121.83610 * 0.04928 * 18 17 16 33 33 H 1.08004 * 125.08820 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4486 1.7039 -1.4208 5 1 2.0973 1.0964 -2.2417 6 6 3.1268 2.8776 -1.6726 7 7 3.5541 3.6176 -0.6730 8 14 3.4374 3.4173 -3.4338 9 1 2.1396 3.5956 -4.1332 10 1 4.1800 4.7033 -3.4337 11 1 4.2392 2.3822 -4.1345 12 6 2.1389 -1.1672 -0.0005 13 8 3.3517 -1.1672 -0.0001 14 6 1.3853 -2.4722 -0.0005 15 6 2.3646 -3.6177 -0.0005 16 6 2.4004 -4.6211 0.8919 17 7 3.4459 -5.4587 0.5238 18 6 4.0490 -6.6228 0.9378 19 6 5.0611 -7.0394 0.2197 20 16 5.3447 -5.9277 -1.1120 21 6 4.0029 -4.9156 -0.5813 22 7 3.3485 -3.8070 -0.8885 23 1 -0.3634 0.0000 1.0277 24 1 -0.3634 0.8900 -0.5137 25 1 -0.3634 -0.8899 -0.5139 26 1 1.6084 2.0284 0.5140 27 1 3.1498 1.1384 0.5138 28 1 4.0309 4.4436 -0.8503 29 1 0.7584 -2.5298 -0.8902 30 1 0.7589 -2.5302 0.8897 31 1 1.7378 -4.7544 1.7342 32 1 3.7063 -7.1640 1.8074 33 1 5.6359 -7.9325 0.4161 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000073002349.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:08 Heat of formation + Delta-G solvation = 45.589524 kcal Electronic energy + Delta-G solvation = -18780.481537 eV Core-core repulsion = 15740.908060 eV Total energy + Delta-G solvation = -3039.573477 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 279.078 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -43.58269 -40.47649 -37.58792 -36.45680 -34.74722 -32.70003 -31.68834 -29.94235 -28.19804 -27.12017 -25.00245 -24.81493 -21.88259 -21.65729 -19.74760 -19.28058 -18.68989 -17.83190 -17.12693 -16.97289 -16.68162 -16.30726 -16.14799 -15.46001 -15.20649 -14.45453 -14.41499 -14.23829 -13.76692 -13.59728 -13.39987 -13.16558 -13.05790 -12.82041 -12.53595 -12.48809 -12.17930 -12.17882 -11.71297 -11.47411 -11.06412 -10.64814 -10.55439 -9.70323 -9.34937 -8.67271 -8.22471 -6.37283 -0.08076 0.02793 0.79525 1.32510 1.33674 1.39323 1.46330 1.65966 1.81605 1.94511 2.36231 2.59714 3.06269 3.42494 3.57934 3.99070 4.15004 4.30447 4.42453 4.44144 4.56625 4.61380 4.70355 4.81639 5.01085 5.05249 5.13932 5.23882 5.46593 5.57737 5.88800 5.96695 6.08155 6.70755 6.82794 6.86741 7.29260 7.59568 8.84125 Molecular weight = 279.08amu Principal moments of inertia in cm(-1) A = 0.023786 B = 0.004158 C = 0.003722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1176.904131 B = 6732.935954 C = 7520.312393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.615 5.615 3 C 0.262 3.738 4 C -0.544 4.544 5 H 0.049 0.951 6 C 0.007 3.993 7 N -0.929 5.929 8 Si 0.966 3.034 9 H -0.257 1.257 10 H -0.274 1.274 11 H -0.283 1.283 12 C 0.495 3.505 13 O -0.589 6.589 14 C -0.042 4.042 15 C 0.029 3.971 16 C -0.032 4.032 17 N -0.412 5.412 18 C 0.036 3.964 19 C -0.202 4.202 20 S 0.157 5.843 21 C 0.096 3.904 22 N -0.490 5.490 23 H 0.077 0.923 24 H 0.062 0.938 25 H 0.096 0.904 26 H 0.026 0.974 27 H -0.009 1.009 28 H 0.267 0.733 29 H 0.121 0.879 30 H 0.153 0.847 31 H 0.231 0.769 32 H 0.227 0.773 33 H 0.241 0.759 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.604 -25.062 5.627 26.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.347 5.347 3 C 0.140 3.860 4 C -0.583 4.583 5 H 0.067 0.933 6 C -0.192 4.192 7 N -0.569 5.569 8 Si 0.790 3.210 9 H -0.181 1.181 10 H -0.199 1.199 11 H -0.209 1.209 12 C 0.283 3.717 13 O -0.469 6.469 14 C -0.082 4.082 15 C -0.102 4.102 16 C -0.164 4.164 17 N -0.092 5.092 18 C -0.090 4.090 19 C -0.339 4.339 20 S 0.405 5.595 21 C -0.270 4.270 22 N -0.213 5.213 23 H 0.095 0.905 24 H 0.081 0.919 25 H 0.115 0.885 26 H 0.044 0.956 27 H 0.010 0.990 28 H 0.076 0.924 29 H 0.139 0.861 30 H 0.171 0.829 31 H 0.247 0.753 32 H 0.243 0.757 33 H 0.258 0.742 Dipole moment (debyes) X Y Z Total from point charges -3.832 -24.362 4.032 24.989 hybrid contribution -0.486 0.535 0.745 1.037 sum -4.317 -23.827 4.777 24.682 Atomic orbital electron populations 1.21977 0.77574 1.04038 1.02900 1.48189 1.08528 1.06073 1.71923 1.18681 0.90957 0.80639 0.95698 1.21709 1.36878 1.06466 0.93224 0.93272 1.25856 0.94848 0.96425 1.02038 1.70043 1.38974 1.14818 1.33030 0.85495 0.78968 0.77292 0.79213 1.18129 1.19910 1.20891 1.21213 0.87903 0.86377 0.76197 1.90670 1.16930 1.87939 1.51343 1.20097 0.95258 0.85302 1.07522 1.20488 0.97441 0.97760 0.94482 1.23040 0.95761 0.92769 1.04873 1.44216 1.24372 1.19098 1.21495 1.21127 0.96587 0.87250 1.04083 1.25648 1.02996 1.06692 0.98515 1.84793 1.27470 1.15887 1.31314 1.26696 1.05837 0.99247 0.95179 1.70419 1.08413 1.12882 1.29600 0.90475 0.91913 0.88538 0.95611 0.99041 0.92386 0.86094 0.82892 0.75258 0.75710 0.74242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.30 10.24 127.77 1.31 3.61 16 2 N -0.61 -27.62 2.86 -851.12 -2.43 -30.06 16 3 C 0.26 15.03 5.16 85.63 0.44 15.48 16 4 C -0.54 -33.52 9.39 25.60 0.24 -33.28 16 5 H 0.05 3.02 7.81 -2.91 -0.02 3.00 16 6 C 0.01 0.43 5.46 84.65 0.46 0.89 16 7 N -0.93 -58.79 13.29 21.44 0.28 -58.50 16 8 Si 0.97 47.56 29.54 68.60 2.03 49.58 16 9 H -0.26 -11.75 7.11 99.48 0.71 -11.05 16 10 H -0.27 -12.85 7.11 99.48 0.71 -12.15 16 11 H -0.28 -14.19 7.11 99.48 0.71 -13.48 16 12 C 0.49 22.48 7.66 87.66 0.67 23.16 16 13 O -0.59 -34.43 15.14 -3.03 -0.05 -34.48 16 14 C -0.04 -1.25 4.81 29.10 0.14 -1.11 16 15 C 0.03 1.00 5.84 41.36 0.24 1.24 16 16 C -0.03 -0.79 11.91 82.67 0.98 0.20 16 17 N -0.41 -10.37 3.19 -355.67 -1.13 -11.51 16 18 C 0.04 0.52 11.26 83.86 0.94 1.46 16 19 C -0.20 -2.52 11.11 67.87 0.75 -1.76 16 20 S 0.16 3.69 23.37 -56.49 -1.32 2.37 16 21 C 0.10 3.24 8.93 179.68 1.60 4.85 16 22 N -0.49 -20.58 10.68 -184.82 -1.97 -22.56 16 23 H 0.08 1.81 8.14 -2.38 -0.02 1.80 16 24 H 0.06 2.01 8.07 -2.39 -0.02 2.00 16 25 H 0.10 2.13 6.44 -2.39 -0.02 2.11 16 26 H 0.03 1.47 8.07 -2.38 -0.02 1.46 16 27 H -0.01 -0.57 7.42 -2.39 -0.02 -0.59 16 28 H 0.27 15.82 8.31 -92.70 -0.77 15.05 16 29 H 0.12 3.17 7.40 -2.39 -0.02 3.15 16 30 H 0.15 2.90 8.07 -2.39 -0.02 2.88 16 31 H 0.23 3.06 8.06 -2.91 -0.02 3.04 16 32 H 0.23 0.97 8.06 -2.91 -0.02 0.95 16 33 H 0.24 0.54 8.06 -2.91 -0.02 0.51 16 Total: -1.00 -96.05 305.06 4.33 -91.72 By element: Atomic # 1 Polarization: -2.44 SS G_CDS: 1.13 Total: -1.31 kcal Atomic # 6 Polarization: 6.94 SS G_CDS: 7.79 Total: 14.73 kcal Atomic # 7 Polarization: -117.37 SS G_CDS: -5.25 Total: -122.62 kcal Atomic # 8 Polarization: -34.43 SS G_CDS: -0.05 Total: -34.48 kcal Atomic # 14 Polarization: 47.56 SS G_CDS: 2.03 Total: 49.58 kcal Atomic # 16 Polarization: 3.69 SS G_CDS: -1.32 Total: 2.37 kcal Total: -96.05 4.33 -91.72 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000073002349.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.308 kcal (2) G-P(sol) polarization free energy of solvation -96.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.718 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds