Wall clock time and date at job start Wed Apr 15 2020 11:43:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46498 * 120.00181 * 2 1 4 4 H 1.09001 * 108.84692 * 182.87581 * 3 2 1 5 5 C 1.52940 * 108.88511 * 64.43641 * 3 2 1 6 6 C 1.55157 * 108.95961 * 209.10548 * 5 3 2 7 7 S 1.83980 * 100.90987 * 41.43714 * 6 5 3 8 8 C 1.53707 * 108.88962 * 301.45626 * 3 2 1 9 9 S 1.65600 * 119.99866 * 180.02562 * 2 1 3 10 10 O 1.42099 * 104.27906 * 153.92708 * 9 2 1 11 11 O 1.42101 * 104.27759 * 26.06944 * 9 2 1 12 12 C 1.81396 * 104.45054 * 269.99928 * 9 2 1 13 13 C 1.52996 * 109.47320 * 179.97438 * 12 9 2 14 14 C 1.50702 * 109.47159 * 179.97438 * 13 12 9 15 15 H 1.08002 * 120.00299 * 0.02562 * 14 13 12 16 16 C 1.37884 * 119.99942 * 179.72211 * 14 13 12 17 17 N 1.31514 * 119.99698 * 0.28408 * 16 14 13 18 18 Si 1.86794 * 119.99837 * 180.27476 * 16 14 13 19 19 H 1.48496 * 109.47341 * 0.02562 * 18 16 14 20 20 H 1.48508 * 109.46983 * 120.00379 * 18 16 14 21 21 H 1.48503 * 109.47491 * 240.00192 * 18 16 14 22 22 H 1.08995 * 109.47105 * 270.00343 * 1 2 3 23 23 H 1.09000 * 109.46961 * 29.99859 * 1 2 3 24 24 H 1.08995 * 109.47202 * 149.99733 * 1 2 3 25 25 H 1.09000 * 109.60459 * 329.03221 * 5 3 2 26 26 H 1.09000 * 109.60651 * 89.17813 * 5 3 2 27 27 H 1.09004 * 111.12933 * 283.52890 * 6 5 3 28 28 H 1.08995 * 111.13201 * 159.35210 * 6 5 3 29 29 H 1.09000 * 110.33917 * 242.49429 * 8 3 2 30 30 H 1.08999 * 110.33994 * 4.74218 * 8 3 2 31 31 H 1.09004 * 109.46947 * 59.99849 * 12 9 2 32 32 H 1.09000 * 109.47486 * 300.00277 * 12 9 2 33 33 H 1.09004 * 109.47066 * 60.00127 * 13 12 9 34 34 H 1.08994 * 109.47405 * 299.99958 * 13 12 9 35 35 H 0.97005 * 119.99651 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 1 3.2658 1.0585 -0.0518 5 6 1.9043 2.0096 1.3054 6 6 2.0117 3.5368 1.0533 7 16 1.1810 3.6790 -0.5821 8 6 1.7891 2.0791 -1.2406 9 16 2.2930 -1.4342 -0.0006 10 8 3.5394 -1.1190 -0.6058 11 8 1.3969 -2.3559 -0.6062 12 6 2.5193 -1.8270 1.7558 13 6 3.2808 -3.1473 1.8891 14 6 3.4693 -3.4732 3.3483 15 1 3.0842 -2.8057 4.1050 16 6 4.1281 -4.6269 3.7175 17 7 4.5968 -5.4399 2.7961 18 14 4.3551 -5.0348 5.5261 19 1 3.7406 -3.9671 6.3553 20 1 3.6999 -6.3332 5.8268 21 1 5.8047 -5.1288 5.8343 22 1 -0.3633 0.0001 1.0276 23 1 -0.3633 0.8900 -0.5138 24 1 -0.3633 -0.8899 -0.5138 25 1 0.8984 1.7652 1.6467 26 1 2.6275 1.7126 2.0649 27 1 3.0532 3.8530 0.9939 28 1 1.4751 4.0998 1.8169 29 1 2.6505 2.2391 -1.8891 30 1 0.9952 1.5664 -1.7835 31 1 1.5451 -1.9197 2.2358 32 1 3.0866 -1.0298 2.2362 33 1 4.2550 -3.0549 1.4090 34 1 2.7131 -3.9442 1.4089 35 1 5.0605 -6.2514 3.0558 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000159314457.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:10 Heat of formation + Delta-G solvation = -76.843303 kcal Electronic energy + Delta-G solvation = -18368.597517 eV Core-core repulsion = 15426.866155 eV Total energy + Delta-G solvation = -2941.731363 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 279.075 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -38.13538 -36.74559 -35.53397 -33.94718 -33.18510 -31.21579 -29.45421 -26.79057 -25.61719 -24.46312 -21.73672 -20.51919 -18.69473 -17.85293 -17.01819 -16.65879 -16.08284 -15.61192 -15.14428 -14.71867 -14.58497 -14.22661 -13.79243 -13.49660 -12.95228 -12.64418 -12.59380 -12.47261 -12.24842 -12.05341 -11.81616 -11.67497 -11.54716 -11.30679 -11.13366 -11.02133 -10.99571 -10.45202 -10.44668 -10.15929 -9.83183 -9.40756 -8.92778 -8.54931 -7.92429 -6.16791 -4.22606 0.63957 1.60904 2.07435 2.89696 3.22202 3.29692 3.32740 4.19118 4.19949 4.33943 4.36712 4.62368 4.73628 4.75963 4.87043 4.95622 5.18578 5.22970 5.35574 5.45307 5.46810 5.54947 5.61942 5.68420 5.79482 5.83935 6.03234 6.42016 6.51532 7.24497 7.30173 7.76169 8.12502 8.80998 9.42541 10.94260 Molecular weight = 279.07amu Principal moments of inertia in cm(-1) A = 0.028624 B = 0.004542 C = 0.004187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 977.962496 B = 6163.024078 C = 6685.717907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -1.004 6.004 3 C 0.143 3.857 4 H 0.112 0.888 5 C -0.143 4.143 6 C -0.064 4.064 7 S -0.300 6.300 8 C -0.076 4.076 9 S 2.587 3.413 10 O -0.963 6.963 11 O -0.961 6.961 12 C -0.587 4.587 13 C 0.027 3.973 14 C -0.520 4.520 15 H 0.062 0.938 16 C 0.058 3.942 17 N -0.890 5.890 18 Si 0.900 3.100 19 H -0.272 1.272 20 H -0.282 1.282 21 H -0.282 1.282 22 H 0.055 0.945 23 H 0.075 0.925 24 H 0.086 0.914 25 H 0.090 0.910 26 H 0.091 0.909 27 H 0.094 0.906 28 H 0.108 0.892 29 H 0.099 0.901 30 H 0.109 0.891 31 H 0.120 0.880 32 H 0.118 0.882 33 H 0.033 0.967 34 H 0.033 0.967 35 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.946 16.419 -3.656 18.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.839 5.839 3 C 0.034 3.966 4 H 0.130 0.870 5 C -0.184 4.184 6 C -0.213 4.213 7 S -0.075 6.075 8 C -0.226 4.226 9 S 2.686 3.314 10 O -0.954 6.954 11 O -0.951 6.951 12 C -0.720 4.720 13 C -0.012 4.012 14 C -0.560 4.560 15 H 0.080 0.920 16 C -0.145 4.145 17 N -0.528 5.528 18 Si 0.727 3.273 19 H -0.197 1.197 20 H -0.208 1.208 21 H -0.208 1.208 22 H 0.073 0.927 23 H 0.094 0.906 24 H 0.105 0.895 25 H 0.109 0.891 26 H 0.109 0.891 27 H 0.113 0.887 28 H 0.126 0.874 29 H 0.117 0.883 30 H 0.127 0.873 31 H 0.138 0.862 32 H 0.136 0.864 33 H 0.051 0.949 34 H 0.052 0.948 35 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -7.329 16.650 -5.001 18.867 hybrid contribution 0.750 -0.955 2.103 2.428 sum -6.579 15.696 -2.899 17.264 Atomic orbital electron populations 1.21569 0.78716 1.04225 1.02122 1.57851 1.15161 1.20514 1.90359 1.21392 0.98135 0.84551 0.92487 0.86982 1.22842 1.05013 0.92542 0.97974 1.24293 1.03213 0.98592 0.95197 1.87825 1.69179 1.30259 1.20207 1.24387 1.04846 0.93363 0.99987 1.05841 0.73604 0.72555 0.79383 1.93531 1.43882 1.82752 1.75215 1.93533 1.64722 1.61687 1.75147 1.30472 1.10289 1.10648 1.20630 1.18975 0.94948 0.87144 1.00086 1.21028 1.37296 1.06916 0.90745 0.92002 1.25071 0.95269 0.96074 0.98048 1.69965 1.37379 1.12560 1.32887 0.86413 0.77990 0.78417 0.84462 1.19654 1.20758 1.20763 0.92684 0.90616 0.89548 0.89131 0.89086 0.88747 0.87368 0.88261 0.87265 0.86170 0.86353 0.94869 0.94841 0.92539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.83 9.36 59.85 0.56 1.39 16 2 N -1.00 -12.66 2.90 -114.25 -0.33 -13.00 16 3 C 0.14 1.58 2.95 -67.59 -0.20 1.38 16 4 H 0.11 1.32 6.77 -51.93 -0.35 0.97 16 5 C -0.14 -1.28 5.93 -25.62 -0.15 -1.43 16 6 C -0.06 -0.51 7.52 38.30 0.29 -0.23 16 7 S -0.30 -3.07 23.22 -107.50 -2.50 -5.57 16 8 C -0.08 -0.79 6.59 37.53 0.25 -0.54 16 9 S 2.59 44.60 5.42 -107.50 -0.58 44.01 16 10 O -0.96 -18.99 16.52 -57.54 -0.95 -19.94 16 11 O -0.96 -19.24 16.57 -57.54 -0.95 -20.19 16 12 C -0.59 -10.78 6.11 37.16 0.23 -10.55 16 13 C 0.03 0.69 4.98 -27.88 -0.14 0.55 16 14 C -0.52 -14.12 9.11 -34.44 -0.31 -14.43 16 15 H 0.06 1.59 7.74 -52.49 -0.41 1.18 16 16 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 17 N -0.89 -26.15 13.29 55.43 0.74 -25.41 16 18 Si 0.90 20.88 29.54 -169.99 -5.02 15.86 16 19 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 20 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 21 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 22 H 0.05 0.49 7.90 -51.93 -0.41 0.08 16 23 H 0.08 0.69 6.65 -51.93 -0.35 0.34 16 24 H 0.09 0.99 6.91 -51.93 -0.36 0.64 16 25 H 0.09 0.78 6.98 -51.93 -0.36 0.42 16 26 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 27 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.11 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.10 0.98 8.14 -51.93 -0.42 0.55 16 30 H 0.11 1.12 6.62 -51.93 -0.34 0.78 16 31 H 0.12 1.99 8.14 -51.92 -0.42 1.56 16 32 H 0.12 1.92 8.14 -51.92 -0.42 1.50 16 33 H 0.03 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.03 0.89 8.14 -51.93 -0.42 0.46 16 35 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 LS Contribution 309.81 15.07 4.67 4.67 Total: -1.00 -33.41 309.81 -9.60 -43.01 By element: Atomic # 1 Polarization: 3.99 SS G_CDS: -5.10 Total: -1.10 kcal Atomic # 6 Polarization: -22.76 SS G_CDS: 0.42 Total: -22.34 kcal Atomic # 7 Polarization: -38.81 SS G_CDS: 0.41 Total: -38.41 kcal Atomic # 8 Polarization: -38.23 SS G_CDS: -1.90 Total: -40.13 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Atomic # 16 Polarization: 41.52 SS G_CDS: -3.08 Total: 38.45 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -33.41 -9.60 -43.01 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000159314457.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.829 kcal (2) G-P(sol) polarization free energy of solvation -33.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.015 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds