Wall clock time and date at job start Wed Apr 15 2020 11:43:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46498 * 120.00181 * 2 1 4 4 H 1.09001 * 108.84692 * 182.87581 * 3 2 1 5 5 C 1.52940 * 108.88511 * 64.43641 * 3 2 1 6 6 C 1.55157 * 108.95961 * 209.10548 * 5 3 2 7 7 S 1.83980 * 100.90987 * 41.43714 * 6 5 3 8 8 C 1.53707 * 108.88962 * 301.45626 * 3 2 1 9 9 S 1.65600 * 119.99866 * 180.02562 * 2 1 3 10 10 O 1.42099 * 104.27906 * 153.92708 * 9 2 1 11 11 O 1.42101 * 104.27759 * 26.06944 * 9 2 1 12 12 C 1.81396 * 104.45054 * 269.99928 * 9 2 1 13 13 C 1.52996 * 109.47320 * 179.97438 * 12 9 2 14 14 C 1.50702 * 109.47159 * 179.97438 * 13 12 9 15 15 H 1.08002 * 120.00299 * 0.02562 * 14 13 12 16 16 C 1.37884 * 119.99942 * 179.72211 * 14 13 12 17 17 N 1.31514 * 119.99698 * 0.28408 * 16 14 13 18 18 Si 1.86794 * 119.99837 * 180.27476 * 16 14 13 19 19 H 1.48496 * 109.47341 * 0.02562 * 18 16 14 20 20 H 1.48508 * 109.46983 * 120.00379 * 18 16 14 21 21 H 1.48503 * 109.47491 * 240.00192 * 18 16 14 22 22 H 1.08995 * 109.47105 * 270.00343 * 1 2 3 23 23 H 1.09000 * 109.46961 * 29.99859 * 1 2 3 24 24 H 1.08995 * 109.47202 * 149.99733 * 1 2 3 25 25 H 1.09000 * 109.60459 * 329.03221 * 5 3 2 26 26 H 1.09000 * 109.60651 * 89.17813 * 5 3 2 27 27 H 1.09004 * 111.12933 * 283.52890 * 6 5 3 28 28 H 1.08995 * 111.13201 * 159.35210 * 6 5 3 29 29 H 1.09000 * 110.33917 * 242.49429 * 8 3 2 30 30 H 1.08999 * 110.33994 * 4.74218 * 8 3 2 31 31 H 1.09004 * 109.46947 * 59.99849 * 12 9 2 32 32 H 1.09000 * 109.47486 * 300.00277 * 12 9 2 33 33 H 1.09004 * 109.47066 * 60.00127 * 13 12 9 34 34 H 1.08994 * 109.47405 * 299.99958 * 13 12 9 35 35 H 0.97005 * 119.99651 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 1 3.2658 1.0585 -0.0518 5 6 1.9043 2.0096 1.3054 6 6 2.0117 3.5368 1.0533 7 16 1.1810 3.6790 -0.5821 8 6 1.7891 2.0791 -1.2406 9 16 2.2930 -1.4342 -0.0006 10 8 3.5394 -1.1190 -0.6058 11 8 1.3969 -2.3559 -0.6062 12 6 2.5193 -1.8270 1.7558 13 6 3.2808 -3.1473 1.8891 14 6 3.4693 -3.4732 3.3483 15 1 3.0842 -2.8057 4.1050 16 6 4.1281 -4.6269 3.7175 17 7 4.5968 -5.4399 2.7961 18 14 4.3551 -5.0348 5.5261 19 1 3.7406 -3.9671 6.3553 20 1 3.6999 -6.3332 5.8268 21 1 5.8047 -5.1288 5.8343 22 1 -0.3633 0.0001 1.0276 23 1 -0.3633 0.8900 -0.5138 24 1 -0.3633 -0.8899 -0.5138 25 1 0.8984 1.7652 1.6467 26 1 2.6275 1.7126 2.0649 27 1 3.0532 3.8530 0.9939 28 1 1.4751 4.0998 1.8169 29 1 2.6505 2.2391 -1.8891 30 1 0.9952 1.5664 -1.7835 31 1 1.5451 -1.9197 2.2358 32 1 3.0866 -1.0298 2.2362 33 1 4.2550 -3.0549 1.4090 34 1 2.7131 -3.9442 1.4089 35 1 5.0605 -6.2514 3.0558 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000159314457.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:10 Heat of formation + Delta-G solvation = -99.959351 kcal Electronic energy + Delta-G solvation = -18369.599904 eV Core-core repulsion = 15426.866155 eV Total energy + Delta-G solvation = -2942.733750 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 279.075 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.04721 -38.23614 -37.04174 -35.90008 -34.03548 -33.13096 -30.23578 -27.80578 -27.44919 -25.25485 -23.56408 -21.46596 -19.87265 -19.27246 -18.47189 -17.84591 -17.26441 -17.07497 -16.55810 -16.20640 -15.73403 -15.13341 -15.03839 -14.71211 -14.41839 -13.83247 -13.72369 -13.61871 -13.52703 -13.21612 -13.02967 -12.95570 -12.82048 -12.80044 -12.75063 -12.39158 -12.26415 -12.10958 -11.80614 -11.71779 -11.15899 -10.92188 -10.65928 -10.06273 -8.70472 -8.26438 -6.40453 -0.76326 0.85841 1.34454 1.41548 1.41831 1.55058 1.70571 2.37924 2.81678 3.07343 3.12447 3.36470 3.76189 3.85088 3.96348 4.02009 4.08683 4.14562 4.26946 4.50786 4.64983 4.69365 4.74754 4.81417 4.86139 5.01033 5.06580 5.20174 5.26175 5.27442 5.54631 5.68221 6.05600 6.73699 7.30120 8.86038 Molecular weight = 279.07amu Principal moments of inertia in cm(-1) A = 0.028624 B = 0.004542 C = 0.004187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 977.962496 B = 6163.024078 C = 6685.717907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.991 5.991 3 C 0.136 3.864 4 H 0.103 0.897 5 C -0.142 4.142 6 C -0.053 4.053 7 S -0.324 6.324 8 C -0.075 4.075 9 S 2.610 3.390 10 O -0.992 6.992 11 O -0.992 6.992 12 C -0.584 4.584 13 C 0.020 3.980 14 C -0.537 4.537 15 H 0.077 0.923 16 C -0.004 4.004 17 N -0.935 5.935 18 Si 0.973 3.027 19 H -0.254 1.254 20 H -0.279 1.279 21 H -0.279 1.279 22 H 0.078 0.922 23 H 0.094 0.906 24 H 0.074 0.926 25 H 0.098 0.902 26 H 0.102 0.898 27 H 0.104 0.896 28 H 0.127 0.873 29 H 0.100 0.900 30 H 0.108 0.892 31 H 0.142 0.858 32 H 0.143 0.857 33 H 0.006 0.994 34 H 0.005 0.995 35 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.813 18.346 -1.791 20.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.829 5.829 3 C 0.029 3.971 4 H 0.121 0.879 5 C -0.182 4.182 6 C -0.201 4.201 7 S -0.100 6.100 8 C -0.224 4.224 9 S 2.709 3.291 10 O -0.982 6.982 11 O -0.982 6.982 12 C -0.717 4.717 13 C -0.019 4.019 14 C -0.576 4.576 15 H 0.095 0.905 16 C -0.202 4.202 17 N -0.575 5.575 18 Si 0.797 3.203 19 H -0.178 1.178 20 H -0.205 1.205 21 H -0.204 1.204 22 H 0.097 0.903 23 H 0.112 0.888 24 H 0.093 0.907 25 H 0.117 0.883 26 H 0.120 0.880 27 H 0.123 0.877 28 H 0.145 0.855 29 H 0.119 0.881 30 H 0.127 0.873 31 H 0.160 0.840 32 H 0.161 0.839 33 H 0.024 0.976 34 H 0.023 0.977 35 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -8.201 18.586 -3.127 20.554 hybrid contribution 0.990 -1.469 1.460 2.296 sum -7.211 17.117 -1.666 18.649 Atomic orbital electron populations 1.21801 0.76978 1.04588 1.03836 1.57429 1.15976 1.19444 1.90039 1.21643 0.97476 0.83813 0.94190 0.87906 1.22840 1.05841 0.92861 0.96685 1.24397 1.03831 0.98063 0.93822 1.87945 1.69659 1.30079 1.22281 1.24336 1.04929 0.93430 0.99734 1.04831 0.72851 0.73017 0.78415 1.93488 1.45694 1.83436 1.75592 1.93489 1.65405 1.63734 1.75605 1.30360 1.10832 1.07787 1.22677 1.18828 0.94171 0.89951 0.98981 1.21545 1.36812 1.07189 0.92023 0.90485 1.26112 0.94952 0.96061 1.03075 1.70111 1.38583 1.13272 1.35507 0.85270 0.78000 0.78486 0.78527 1.17797 1.20500 1.20423 0.90334 0.88751 0.90704 0.88319 0.87961 0.87722 0.85471 0.88139 0.87319 0.83971 0.83879 0.97579 0.97709 0.92417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.36 9.36 127.77 1.20 2.56 16 2 N -0.99 -23.36 2.90 -515.38 -1.49 -24.86 16 3 C 0.14 2.75 2.95 45.21 0.13 2.88 16 4 H 0.10 2.29 6.77 -2.39 -0.02 2.28 16 5 C -0.14 -2.07 5.93 31.31 0.19 -1.89 16 6 C -0.05 -0.67 7.52 72.72 0.55 -0.13 16 7 S -0.32 -5.94 23.22 -56.49 -1.31 -7.26 16 8 C -0.07 -1.43 6.59 72.22 0.48 -0.96 16 9 S 2.61 89.55 5.42 -56.49 -0.31 89.24 16 10 O -0.99 -39.55 16.52 -127.65 -2.11 -41.66 16 11 O -0.99 -40.24 16.57 -127.65 -2.12 -42.36 16 12 C -0.58 -20.94 6.11 71.98 0.44 -20.50 16 13 C 0.02 1.00 4.98 29.85 0.15 1.15 16 14 C -0.54 -29.05 9.11 25.60 0.23 -28.81 16 15 H 0.08 3.82 7.74 -2.91 -0.02 3.80 16 16 C 0.00 -0.20 5.46 84.66 0.46 0.26 16 17 N -0.94 -56.30 13.29 21.45 0.28 -56.01 16 18 Si 0.97 42.46 29.54 68.60 2.03 44.49 16 19 H -0.25 -10.27 7.11 99.48 0.71 -9.57 16 20 H -0.28 -11.98 7.11 99.48 0.71 -11.27 16 21 H -0.28 -11.91 7.11 99.48 0.71 -11.21 16 22 H 0.08 1.15 7.90 -2.39 -0.02 1.13 16 23 H 0.09 1.47 6.65 -2.39 -0.02 1.45 16 24 H 0.07 1.63 6.91 -2.39 -0.02 1.61 16 25 H 0.10 1.32 6.98 -2.39 -0.02 1.30 16 26 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 27 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 28 H 0.13 1.19 8.14 -2.39 -0.02 1.17 16 29 H 0.10 1.88 8.14 -2.39 -0.02 1.86 16 30 H 0.11 2.08 6.62 -2.39 -0.02 2.07 16 31 H 0.14 4.42 8.14 -2.39 -0.02 4.40 16 32 H 0.14 4.36 8.14 -2.39 -0.02 4.34 16 33 H 0.01 0.33 8.14 -2.38 -0.02 0.31 16 34 H 0.00 0.26 8.14 -2.39 -0.02 0.24 16 35 H 0.27 15.00 8.31 -92.70 -0.77 14.23 16 Total: -1.00 -73.17 309.81 -0.13 -73.30 By element: Atomic # 1 Polarization: 9.48 SS G_CDS: 1.07 Total: 10.56 kcal Atomic # 6 Polarization: -49.26 SS G_CDS: 3.82 Total: -45.44 kcal Atomic # 7 Polarization: -79.66 SS G_CDS: -1.21 Total: -80.87 kcal Atomic # 8 Polarization: -79.79 SS G_CDS: -4.22 Total: -84.02 kcal Atomic # 14 Polarization: 42.46 SS G_CDS: 2.03 Total: 44.49 kcal Atomic # 16 Polarization: 83.60 SS G_CDS: -1.62 Total: 81.98 kcal Total: -73.17 -0.13 -73.30 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000159314457.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.663 kcal (2) G-P(sol) polarization free energy of solvation -73.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.296 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds