Wall clock time and date at job start Wed Apr 15 2020 11:43:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46498 * 120.00180 * 2 1 4 4 H 1.09000 * 108.82640 * 179.29836 * 3 2 1 5 5 C 1.52328 * 108.86843 * 297.82483 * 3 2 1 6 6 C 1.54256 * 112.58858 * 120.81965 * 5 3 2 7 7 S 1.83955 * 102.58008 * 24.53095 * 6 5 3 8 8 C 1.54254 * 108.86851 * 60.76783 * 3 2 1 9 9 S 1.65606 * 119.99486 * 179.97438 * 2 1 3 10 10 O 1.42100 * 104.27450 * 153.93248 * 9 2 1 11 11 O 1.42093 * 104.28025 * 26.07164 * 9 2 1 12 12 C 1.81403 * 104.44724 * 269.99906 * 9 2 1 13 13 C 1.53001 * 109.47153 * 180.02562 * 12 9 2 14 14 C 1.50694 * 109.47168 * 180.02562 * 13 12 9 15 15 H 1.08000 * 120.00563 * 0.02562 * 14 13 12 16 16 C 1.37885 * 119.99902 * 180.02562 * 14 13 12 17 17 N 1.31516 * 119.99913 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 119.99766 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.47353 * 269.99586 * 18 16 14 20 20 H 1.48501 * 109.47293 * 30.00037 * 18 16 14 21 21 H 1.48504 * 109.46680 * 149.99835 * 18 16 14 22 22 H 1.09001 * 109.47081 * 270.00588 * 1 2 3 23 23 H 1.09007 * 109.46670 * 29.99970 * 1 2 3 24 24 H 1.08996 * 109.47481 * 149.99695 * 1 2 3 25 25 H 1.08998 * 108.87071 * 241.64268 * 5 3 2 26 26 H 1.09004 * 108.86889 * 0.02562 * 5 3 2 27 27 H 1.08999 * 110.79230 * 142.80477 * 6 5 3 28 28 H 1.09003 * 110.79062 * 266.06773 * 6 5 3 29 29 H 1.09001 * 110.79041 * 332.92229 * 8 3 2 30 30 H 1.09004 * 110.79000 * 96.38223 * 8 3 2 31 31 H 1.09002 * 109.46959 * 60.00458 * 12 9 2 32 32 H 1.08998 * 109.47334 * 299.99936 * 12 9 2 33 33 H 1.09007 * 109.46922 * 59.99828 * 13 12 9 34 34 H 1.09003 * 109.46836 * 300.00583 * 13 12 9 35 35 H 0.97001 * 119.99646 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 1 3.2668 1.0575 0.0126 5 6 1.8612 2.0317 -1.2748 6 6 1.2343 3.4123 -0.9910 7 16 1.8649 3.8002 0.6929 8 6 1.8297 2.0571 1.2738 9 16 2.2929 -1.4343 0.0006 10 8 3.5394 -1.1196 -0.6047 11 8 1.3969 -2.3564 -0.6041 12 6 2.5192 -1.8254 1.7575 13 6 3.2817 -3.1450 1.8921 14 6 3.4691 -3.4703 3.3515 15 1 3.0827 -2.8029 4.1076 16 6 4.1340 -4.6201 3.7217 17 7 4.6042 -5.4332 2.8011 18 14 4.3670 -5.0229 5.5308 19 1 5.6407 -4.4289 6.0102 20 1 3.2348 -4.4636 6.3123 21 1 4.4105 -6.4967 5.7081 22 1 -0.3633 0.0001 1.0277 23 1 -0.3633 0.8901 -0.5139 24 1 -0.3634 -0.8899 -0.5138 25 1 2.7743 2.1714 -1.8533 26 1 1.1601 1.4411 -1.8646 27 1 1.5813 4.1508 -1.7137 28 1 0.1459 3.3512 -0.9951 29 1 0.8334 1.7854 1.6228 30 1 2.5718 1.8969 2.0559 31 1 1.5449 -1.9178 2.2375 32 1 3.0865 -1.0279 2.2372 33 1 4.2559 -3.0523 1.4120 34 1 2.7147 -3.9428 1.4122 35 1 5.0723 -6.2419 3.0615 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000159314600.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:12 Heat of formation + Delta-G solvation = -76.417820 kcal Electronic energy + Delta-G solvation = -18357.654732 eV Core-core repulsion = 15415.941820 eV Total energy + Delta-G solvation = -2941.712912 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 279.075 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -38.17167 -36.74686 -35.53001 -33.93171 -33.12049 -31.20386 -29.58931 -26.77165 -25.67683 -24.53769 -21.67091 -20.53762 -18.66587 -17.85394 -17.02479 -16.67970 -16.01242 -15.52578 -15.23046 -14.72516 -14.57337 -14.40672 -13.56175 -13.43632 -13.36171 -12.66895 -12.48964 -12.46577 -12.14889 -12.04623 -11.80595 -11.67407 -11.55690 -11.32299 -11.10878 -11.01584 -10.99576 -10.47174 -10.42632 -10.20561 -9.80638 -9.41014 -8.93054 -8.53297 -7.94922 -6.15479 -4.21309 0.64098 1.62322 2.02495 2.92688 3.24288 3.30707 3.33212 4.11407 4.25166 4.35646 4.41390 4.54593 4.65513 4.81604 4.83800 4.95881 5.19796 5.24992 5.31026 5.39768 5.50624 5.53641 5.58684 5.68484 5.74414 5.84080 6.01233 6.43059 6.50609 7.25408 7.31210 7.77336 8.13775 8.82049 9.43771 10.95542 Molecular weight = 279.07amu Principal moments of inertia in cm(-1) A = 0.026610 B = 0.004625 C = 0.004216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1051.998972 B = 6052.055985 C = 6639.039280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -1.006 6.006 3 C 0.147 3.853 4 H 0.116 0.884 5 C -0.138 4.138 6 C -0.064 4.064 7 S -0.293 6.293 8 C -0.080 4.080 9 S 2.587 3.413 10 O -0.962 6.962 11 O -0.961 6.961 12 C -0.587 4.587 13 C 0.028 3.972 14 C -0.521 4.521 15 H 0.061 0.939 16 C 0.058 3.942 17 N -0.890 5.890 18 Si 0.900 3.100 19 H -0.278 1.278 20 H -0.273 1.273 21 H -0.284 1.284 22 H 0.055 0.945 23 H 0.070 0.930 24 H 0.087 0.913 25 H 0.087 0.913 26 H 0.087 0.913 27 H 0.105 0.895 28 H 0.089 0.911 29 H 0.100 0.900 30 H 0.112 0.888 31 H 0.120 0.880 32 H 0.119 0.881 33 H 0.033 0.967 34 H 0.033 0.967 35 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.498 16.099 -5.956 19.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.842 5.842 3 C 0.039 3.961 4 H 0.134 0.866 5 C -0.178 4.178 6 C -0.213 4.213 7 S -0.068 6.068 8 C -0.230 4.230 9 S 2.686 3.314 10 O -0.953 6.953 11 O -0.952 6.952 12 C -0.721 4.721 13 C -0.011 4.011 14 C -0.560 4.560 15 H 0.080 0.920 16 C -0.144 4.144 17 N -0.528 5.528 18 Si 0.727 3.273 19 H -0.204 1.204 20 H -0.198 1.198 21 H -0.210 1.210 22 H 0.073 0.927 23 H 0.088 0.912 24 H 0.105 0.895 25 H 0.105 0.895 26 H 0.106 0.894 27 H 0.124 0.876 28 H 0.107 0.893 29 H 0.119 0.881 30 H 0.131 0.869 31 H 0.138 0.862 32 H 0.137 0.863 33 H 0.051 0.949 34 H 0.051 0.949 35 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -7.843 16.527 -6.271 19.339 hybrid contribution -0.312 -1.101 1.165 1.633 sum -8.156 15.426 -5.106 18.181 Atomic orbital electron populations 1.21535 0.78951 1.04023 1.01995 1.57966 1.15034 1.20837 1.90324 1.21526 0.98326 0.84088 0.92202 0.86637 1.22365 1.02985 0.94298 0.98181 1.24134 1.02891 0.99301 0.94938 1.88042 1.87310 1.14498 1.16959 1.24672 1.06593 0.91244 1.00515 1.05851 0.73627 0.72537 0.79394 1.93538 1.43812 1.82734 1.75181 1.93529 1.64762 1.61676 1.75214 1.30476 1.10299 1.10706 1.20616 1.18970 0.94942 0.87124 1.00066 1.20991 1.37181 1.07129 0.90741 0.92043 1.25068 0.95262 0.96053 0.98046 1.69954 1.37152 1.12739 1.32977 0.86467 0.78650 0.77650 0.84507 1.20429 1.19756 1.20975 0.92670 0.91162 0.89452 0.89454 0.89428 0.87639 0.89271 0.88112 0.86949 0.86172 0.86291 0.94852 0.94865 0.92491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.79 9.27 59.85 0.55 1.35 16 2 N -1.01 -12.43 2.84 -114.27 -0.32 -12.76 16 3 C 0.15 1.64 2.90 -67.62 -0.20 1.44 16 4 H 0.12 1.42 6.83 -51.93 -0.35 1.06 16 5 C -0.14 -1.29 5.51 -26.42 -0.15 -1.43 16 6 C -0.06 -0.51 7.46 37.81 0.28 -0.23 16 7 S -0.29 -3.07 23.26 -107.50 -2.50 -5.57 16 8 C -0.08 -0.80 6.99 37.81 0.26 -0.54 16 9 S 2.59 44.44 5.41 -107.50 -0.58 43.86 16 10 O -0.96 -19.03 16.56 -57.54 -0.95 -19.98 16 11 O -0.96 -19.08 16.57 -57.54 -0.95 -20.04 16 12 C -0.59 -10.84 6.12 37.16 0.23 -10.62 16 13 C 0.03 0.70 4.98 -27.89 -0.14 0.56 16 14 C -0.52 -14.21 9.11 -34.44 -0.31 -14.52 16 15 H 0.06 1.59 7.74 -52.49 -0.41 1.18 16 16 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 17 N -0.89 -26.26 13.29 55.43 0.74 -25.52 16 18 Si 0.90 21.01 29.54 -169.99 -5.02 15.99 16 19 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 20 H -0.27 -6.19 7.11 56.52 0.40 -5.78 16 21 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 22 H 0.05 0.46 7.85 -51.93 -0.41 0.05 16 23 H 0.07 0.54 6.99 -51.92 -0.36 0.18 16 24 H 0.09 0.95 6.91 -51.93 -0.36 0.59 16 25 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 26 H 0.09 0.79 6.90 -51.93 -0.36 0.43 16 27 H 0.11 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.10 0.91 6.90 -51.93 -0.36 0.55 16 30 H 0.11 1.08 8.14 -51.93 -0.42 0.66 16 31 H 0.12 1.99 8.14 -51.92 -0.42 1.56 16 32 H 0.12 1.96 8.14 -51.93 -0.42 1.53 16 33 H 0.03 0.88 8.14 -51.92 -0.42 0.46 16 34 H 0.03 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 LS Contribution 310.16 15.07 4.67 4.67 Total: -1.00 -33.58 310.16 -9.61 -43.20 By element: Atomic # 1 Polarization: 3.72 SS G_CDS: -5.12 Total: -1.40 kcal Atomic # 6 Polarization: -22.88 SS G_CDS: 0.44 Total: -22.45 kcal Atomic # 7 Polarization: -38.69 SS G_CDS: 0.41 Total: -38.28 kcal Atomic # 8 Polarization: -38.11 SS G_CDS: -1.91 Total: -40.02 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Atomic # 16 Polarization: 41.37 SS G_CDS: -3.08 Total: 38.29 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -33.58 -9.61 -43.20 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000159314600.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.221 kcal (2) G-P(sol) polarization free energy of solvation -33.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.196 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds