Wall clock time and date at job start Wed Apr 15 2020 11:43:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81400 * 1 3 3 C 1.81405 * 102.99833 * 2 1 4 4 C 1.52996 * 115.55001 * 298.24216 * 3 2 1 5 5 N 1.46505 * 109.47046 * 269.70143 * 4 3 2 6 6 S 1.65599 * 120.00004 * 165.08331 * 5 4 3 7 7 O 1.42103 * 104.27592 * 308.92727 * 6 5 4 8 8 O 1.42101 * 104.27406 * 181.07142 * 6 5 4 9 9 C 1.81399 * 104.45121 * 64.99696 * 6 5 4 10 10 C 1.52998 * 109.46990 * 179.97438 * 9 6 5 11 11 C 1.50697 * 109.46990 * 180.02562 * 10 9 6 12 12 H 1.07994 * 120.00067 * 0.02562 * 11 10 9 13 13 C 1.37885 * 120.00062 * 180.02562 * 11 10 9 14 14 N 1.31516 * 119.99685 * 359.97438 * 13 11 10 15 15 Si 1.86800 * 120.00075 * 180.02562 * 13 11 10 16 16 H 1.48500 * 109.47018 * 59.99646 * 15 13 11 17 17 H 1.48500 * 109.46806 * 179.97438 * 15 13 11 18 18 H 1.48497 * 109.47041 * 299.99828 * 15 13 11 19 19 C 1.53005 * 117.51742 * 83.94047 * 3 2 1 20 20 C 1.53000 * 59.99941 * 107.48126 * 19 3 2 21 21 H 1.08999 * 109.46656 * 177.37680 * 1 2 3 22 22 H 1.08998 * 109.47188 * 297.37184 * 1 2 3 23 23 H 1.09001 * 109.47296 * 57.37488 * 1 2 3 24 24 H 1.09003 * 109.47461 * 149.70118 * 4 3 2 25 25 H 1.08998 * 109.47308 * 29.70111 * 4 3 2 26 26 H 0.97003 * 119.99874 * 345.07656 * 5 4 3 27 27 H 1.09000 * 109.47256 * 300.00081 * 9 6 5 28 28 H 1.09004 * 109.46985 * 60.00145 * 9 6 5 29 29 H 1.09000 * 109.47440 * 300.00278 * 10 9 6 30 30 H 1.09004 * 109.46885 * 60.00393 * 10 9 6 31 31 H 0.97003 * 119.99481 * 180.02562 * 14 13 11 32 32 H 1.09005 * 117.49746 * 214.97377 * 19 3 2 33 33 H 1.08999 * 117.49514 * 359.97438 * 19 3 2 34 34 H 1.08996 * 117.50105 * 252.50881 * 20 19 3 35 35 H 1.08999 * 117.51690 * 107.47932 * 20 19 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7676 0.0000 4 6 1.7340 2.5575 -1.2160 5 7 2.7668 2.5419 -2.2550 6 16 2.3896 2.9892 -3.8042 7 8 1.2423 2.2137 -4.1233 8 8 3.6056 2.8278 -4.5214 9 6 1.9549 4.7456 -3.6751 10 6 1.5831 5.2819 -5.0590 11 6 1.2225 6.7412 -4.9518 12 1 1.2557 7.2366 -3.9928 13 6 0.8503 7.4439 -6.0783 14 7 0.8104 6.8406 -7.2462 15 14 0.4041 9.2529 -5.9456 16 1 1.5659 10.0118 -5.4169 17 1 0.0431 9.7734 -7.2888 18 1 -0.7508 9.4117 -5.0258 19 6 2.2415 2.4886 1.3494 20 6 3.5546 2.1850 0.6252 21 1 -0.3632 -1.0266 -0.0470 22 1 -0.3633 0.4725 0.9126 23 1 -0.3634 0.5541 -0.8655 24 1 1.5295 3.5871 -0.9224 25 1 0.8224 2.1022 -1.6030 26 1 3.6716 2.2696 -2.0355 27 1 1.1068 4.8614 -3.0003 28 1 2.8071 5.3032 -3.2867 29 1 2.4314 5.1662 -5.7335 30 1 0.7309 4.7243 -5.4478 31 1 0.5488 7.3351 -8.0388 32 1 1.9065 3.5257 1.3707 33 1 2.0086 1.9009 2.2373 34 1 4.1860 1.3976 1.0369 35 1 4.0838 3.0221 0.1699 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000194018840.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:13 Heat of formation + Delta-G solvation = -57.624199 kcal Electronic energy + Delta-G solvation = -17793.254389 eV Core-core repulsion = 14852.356429 eV Total energy + Delta-G solvation = -2940.897960 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 279.075 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -38.30394 -36.56416 -35.43329 -34.01243 -33.91007 -31.18061 -29.17506 -26.71688 -25.61977 -22.85034 -21.69048 -21.30116 -18.94109 -17.68625 -17.01603 -16.37375 -16.07696 -15.47680 -15.26275 -14.80668 -14.56397 -14.40609 -13.74969 -13.43332 -13.39957 -13.14920 -12.52481 -12.37082 -11.98297 -11.85684 -11.76944 -11.58531 -11.50284 -11.08603 -11.00724 -10.98023 -10.70494 -10.45371 -10.39732 -10.10416 -9.77988 -9.49245 -9.04166 -8.51673 -7.83736 -6.13879 -4.19782 0.77464 1.45454 2.28293 3.02937 3.25600 3.30656 3.32226 3.42080 4.21277 4.22544 4.33303 4.39482 4.52418 4.74100 4.97652 4.98677 5.12123 5.21154 5.26718 5.35028 5.37443 5.52197 5.56547 5.64568 5.65834 5.75058 5.91098 6.45842 7.07938 7.28243 7.34611 7.78506 8.15651 8.83292 9.44966 10.97112 Molecular weight = 279.07amu Principal moments of inertia in cm(-1) A = 0.026729 B = 0.004113 C = 0.003942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1047.289918 B = 6805.701022 C = 7101.686507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 S -0.200 6.200 3 C -0.127 4.127 4 C 0.157 3.843 5 N -1.121 6.121 6 S 2.593 3.407 7 O -0.966 6.966 8 O -0.965 6.965 9 C -0.590 4.590 10 C 0.028 3.972 11 C -0.522 4.522 12 H 0.060 0.940 13 C 0.058 3.942 14 N -0.890 5.890 15 Si 0.900 3.100 16 H -0.275 1.275 17 H -0.285 1.285 18 H -0.276 1.276 19 C -0.148 4.148 20 C -0.133 4.133 21 H 0.101 0.899 22 H 0.077 0.923 23 H 0.083 0.917 24 H 0.073 0.927 25 H 0.083 0.917 26 H 0.414 0.586 27 H 0.117 0.883 28 H 0.121 0.879 29 H 0.034 0.966 30 H 0.034 0.966 31 H 0.266 0.734 32 H 0.105 0.895 33 H 0.106 0.894 34 H 0.105 0.895 35 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.874 -9.535 18.301 20.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.298 4.298 2 S 0.030 5.970 3 C -0.238 4.238 4 C 0.028 3.972 5 N -0.879 5.879 6 S 2.690 3.310 7 O -0.955 6.955 8 O -0.956 6.956 9 C -0.723 4.723 10 C -0.011 4.011 11 C -0.561 4.561 12 H 0.079 0.921 13 C -0.144 4.144 14 N -0.528 5.528 15 Si 0.728 3.272 16 H -0.201 1.201 17 H -0.210 1.210 18 H -0.201 1.201 19 C -0.189 4.189 20 C -0.172 4.172 21 H 0.120 0.880 22 H 0.096 0.904 23 H 0.102 0.898 24 H 0.091 0.909 25 H 0.102 0.898 26 H 0.247 0.753 27 H 0.135 0.865 28 H 0.139 0.861 29 H 0.052 0.948 30 H 0.052 0.948 31 H 0.076 0.924 32 H 0.123 0.877 33 H 0.125 0.875 34 H 0.124 0.876 35 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 2.325 -11.003 17.292 20.627 hybrid contribution -0.833 2.428 0.452 2.606 sum 1.492 -8.575 17.744 19.764 Atomic orbital electron populations 1.23475 0.94350 1.06553 1.05435 1.86496 1.07371 1.05764 1.97404 1.23707 1.07629 0.95270 0.97220 1.20895 0.91050 0.98984 0.86236 1.55767 1.19174 1.84885 1.28063 1.05560 0.74391 0.78722 0.72287 1.93538 1.52533 1.67589 1.81881 1.93556 1.45639 1.86704 1.69679 1.30461 1.10579 1.20613 1.10697 1.18960 0.98045 0.98073 0.86032 1.20957 1.46923 0.93859 0.94388 0.92133 1.25069 0.95266 0.98844 0.95260 1.69948 1.47154 1.36827 0.98860 0.86526 0.78943 0.84433 0.77337 1.20085 1.21044 1.20099 1.23389 1.00749 1.01394 0.93348 1.22974 0.89629 1.03162 1.01415 0.88034 0.90380 0.89772 0.90883 0.89842 0.75268 0.86468 0.86092 0.94799 0.94818 0.92445 0.87656 0.87523 0.87618 0.87121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.13 10.57 101.05 1.07 -0.06 16 2 S -0.20 -2.15 22.26 -107.50 -2.39 -4.55 16 3 C -0.13 -1.22 2.19 -90.62 -0.20 -1.42 16 4 C 0.16 1.77 6.15 -4.04 -0.02 1.74 16 5 N -1.12 -14.62 5.83 -10.61 -0.06 -14.68 16 6 S 2.59 46.22 5.46 -107.50 -0.59 45.63 16 7 O -0.97 -20.09 17.50 -57.54 -1.01 -21.10 16 8 O -0.97 -20.19 18.08 -57.54 -1.04 -21.23 16 9 C -0.59 -11.04 6.01 37.16 0.22 -10.81 16 10 C 0.03 0.71 4.98 -27.89 -0.14 0.57 16 11 C -0.52 -14.31 9.11 -34.44 -0.31 -14.62 16 12 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 13 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 14 N -0.89 -26.39 13.29 55.43 0.74 -25.65 16 15 Si 0.90 21.04 29.54 -169.99 -5.02 16.01 16 16 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 17 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 18 H -0.28 -6.28 7.11 56.52 0.40 -5.87 16 19 C -0.15 -1.07 9.94 -26.73 -0.27 -1.33 16 20 C -0.13 -1.04 9.33 -26.73 -0.25 -1.29 16 21 H 0.10 0.77 8.14 -51.92 -0.42 0.34 16 22 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 23 H 0.08 0.79 7.05 -51.92 -0.37 0.43 16 24 H 0.07 0.68 7.88 -51.93 -0.41 0.27 16 25 H 0.08 1.02 6.33 -51.93 -0.33 0.69 16 26 H 0.41 4.74 8.02 -34.47 -0.28 4.46 16 27 H 0.12 1.93 8.14 -51.92 -0.42 1.51 16 28 H 0.12 2.02 8.14 -51.92 -0.42 1.60 16 29 H 0.03 0.91 8.14 -51.93 -0.42 0.49 16 30 H 0.03 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 32 H 0.11 0.66 8.03 -51.93 -0.42 0.24 16 33 H 0.11 0.70 8.14 -51.93 -0.42 0.27 16 34 H 0.11 0.79 8.14 -51.93 -0.42 0.36 16 35 H 0.11 0.79 8.10 -51.93 -0.42 0.37 16 LS Contribution 323.60 15.07 4.88 4.88 Total: -1.00 -34.83 323.60 -9.63 -44.47 By element: Atomic # 1 Polarization: 7.04 SS G_CDS: -5.14 Total: 1.90 kcal Atomic # 6 Polarization: -25.69 SS G_CDS: 0.00 Total: -25.68 kcal Atomic # 7 Polarization: -41.01 SS G_CDS: 0.67 Total: -40.33 kcal Atomic # 8 Polarization: -40.28 SS G_CDS: -2.05 Total: -42.33 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.01 kcal Atomic # 16 Polarization: 44.06 SS G_CDS: -2.98 Total: 41.08 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -34.83 -9.63 -44.47 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194018840.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.158 kcal (2) G-P(sol) polarization free energy of solvation -34.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.466 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds