Wall clock time and date at job start Wed Apr 15 2020 11:43:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81400 * 1 3 3 C 1.81405 * 102.99833 * 2 1 4 4 C 1.52996 * 115.55001 * 298.24216 * 3 2 1 5 5 N 1.46505 * 109.47046 * 269.70143 * 4 3 2 6 6 S 1.65599 * 120.00004 * 165.08331 * 5 4 3 7 7 O 1.42103 * 104.27592 * 308.92727 * 6 5 4 8 8 O 1.42101 * 104.27406 * 181.07142 * 6 5 4 9 9 C 1.81399 * 104.45121 * 64.99696 * 6 5 4 10 10 C 1.52998 * 109.46990 * 179.97438 * 9 6 5 11 11 C 1.50697 * 109.46990 * 180.02562 * 10 9 6 12 12 H 1.07994 * 120.00067 * 0.02562 * 11 10 9 13 13 C 1.37885 * 120.00062 * 180.02562 * 11 10 9 14 14 N 1.31516 * 119.99685 * 359.97438 * 13 11 10 15 15 Si 1.86800 * 120.00075 * 180.02562 * 13 11 10 16 16 H 1.48500 * 109.47018 * 59.99646 * 15 13 11 17 17 H 1.48500 * 109.46806 * 179.97438 * 15 13 11 18 18 H 1.48497 * 109.47041 * 299.99828 * 15 13 11 19 19 C 1.53005 * 117.51742 * 83.94047 * 3 2 1 20 20 C 1.53000 * 59.99941 * 107.48126 * 19 3 2 21 21 H 1.08999 * 109.46656 * 177.37680 * 1 2 3 22 22 H 1.08998 * 109.47188 * 297.37184 * 1 2 3 23 23 H 1.09001 * 109.47296 * 57.37488 * 1 2 3 24 24 H 1.09003 * 109.47461 * 149.70118 * 4 3 2 25 25 H 1.08998 * 109.47308 * 29.70111 * 4 3 2 26 26 H 0.97003 * 119.99874 * 345.07656 * 5 4 3 27 27 H 1.09000 * 109.47256 * 300.00081 * 9 6 5 28 28 H 1.09004 * 109.46985 * 60.00145 * 9 6 5 29 29 H 1.09000 * 109.47440 * 300.00278 * 10 9 6 30 30 H 1.09004 * 109.46885 * 60.00393 * 10 9 6 31 31 H 0.97003 * 119.99481 * 180.02562 * 14 13 11 32 32 H 1.09005 * 117.49746 * 214.97377 * 19 3 2 33 33 H 1.08999 * 117.49514 * 359.97438 * 19 3 2 34 34 H 1.08996 * 117.50105 * 252.50881 * 20 19 3 35 35 H 1.08999 * 117.51690 * 107.47932 * 20 19 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7676 0.0000 4 6 1.7340 2.5575 -1.2160 5 7 2.7668 2.5419 -2.2550 6 16 2.3896 2.9892 -3.8042 7 8 1.2423 2.2137 -4.1233 8 8 3.6056 2.8278 -4.5214 9 6 1.9549 4.7456 -3.6751 10 6 1.5831 5.2819 -5.0590 11 6 1.2225 6.7412 -4.9518 12 1 1.2557 7.2366 -3.9928 13 6 0.8503 7.4439 -6.0783 14 7 0.8104 6.8406 -7.2462 15 14 0.4041 9.2529 -5.9456 16 1 1.5659 10.0118 -5.4169 17 1 0.0431 9.7734 -7.2888 18 1 -0.7508 9.4117 -5.0258 19 6 2.2415 2.4886 1.3494 20 6 3.5546 2.1850 0.6252 21 1 -0.3632 -1.0266 -0.0470 22 1 -0.3633 0.4725 0.9126 23 1 -0.3634 0.5541 -0.8655 24 1 1.5295 3.5871 -0.9224 25 1 0.8224 2.1022 -1.6030 26 1 3.6716 2.2696 -2.0355 27 1 1.1068 4.8614 -3.0003 28 1 2.8071 5.3032 -3.2867 29 1 2.4314 5.1662 -5.7335 30 1 0.7309 4.7243 -5.4478 31 1 0.5488 7.3351 -8.0388 32 1 1.9065 3.5257 1.3707 33 1 2.0086 1.9009 2.2373 34 1 4.1860 1.3976 1.0369 35 1 4.0838 3.0221 0.1699 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000194018840.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:13 Heat of formation + Delta-G solvation = -83.038834 kcal Electronic energy + Delta-G solvation = -17794.356450 eV Core-core repulsion = 14852.356429 eV Total energy + Delta-G solvation = -2942.000021 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 279.075 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.04272 -38.13431 -37.01401 -35.88977 -35.00038 -33.12338 -29.86565 -27.61698 -27.57980 -23.67148 -23.32494 -22.08712 -20.30836 -19.14495 -18.49595 -17.71710 -17.15711 -17.00713 -16.52760 -16.24228 -15.85866 -15.41833 -14.96281 -14.51347 -14.39499 -14.17028 -13.97640 -13.71398 -13.32622 -13.20300 -13.11842 -12.96794 -12.89250 -12.78987 -12.39704 -12.22523 -12.16141 -11.84574 -11.72037 -11.39996 -11.19139 -10.80675 -10.63244 -10.31614 -8.64672 -8.25209 -6.39504 -0.69428 0.74346 1.41819 1.45181 1.53371 1.56554 1.84133 2.38803 2.69267 2.82602 3.08390 3.26361 3.53726 3.59276 3.92370 4.02307 4.13483 4.27566 4.35788 4.39812 4.52397 4.69164 4.75455 4.77349 4.83616 4.94592 4.99979 5.22908 5.27592 5.28472 5.68765 6.05807 6.08626 6.74288 7.30870 8.86921 Molecular weight = 279.07amu Principal moments of inertia in cm(-1) A = 0.026729 B = 0.004113 C = 0.003942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1047.289918 B = 6805.701022 C = 7101.686507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 S -0.248 6.248 3 C -0.138 4.138 4 C 0.146 3.854 5 N -1.103 6.103 6 S 2.618 3.382 7 O -0.999 6.999 8 O -1.000 7.000 9 C -0.584 4.584 10 C 0.019 3.981 11 C -0.539 4.539 12 H 0.078 0.922 13 C -0.004 4.004 14 N -0.935 5.935 15 Si 0.974 3.026 16 H -0.263 1.263 17 H -0.286 1.286 18 H -0.262 1.262 19 C -0.127 4.127 20 C -0.131 4.131 21 H 0.109 0.891 22 H 0.095 0.905 23 H 0.073 0.927 24 H 0.102 0.898 25 H 0.071 0.929 26 H 0.424 0.576 27 H 0.145 0.855 28 H 0.146 0.854 29 H 0.005 0.995 30 H 0.006 0.994 31 H 0.267 0.733 32 H 0.122 0.878 33 H 0.115 0.885 34 H 0.107 0.893 35 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.813 -8.095 20.997 22.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.290 4.290 2 S -0.019 6.019 3 C -0.250 4.250 4 C 0.018 3.982 5 N -0.865 5.865 6 S 2.715 3.285 7 O -0.989 6.989 8 O -0.990 6.990 9 C -0.717 4.717 10 C -0.020 4.020 11 C -0.578 4.578 12 H 0.096 0.904 13 C -0.202 4.202 14 N -0.575 5.575 15 Si 0.798 3.202 16 H -0.188 1.188 17 H -0.211 1.211 18 H -0.187 1.187 19 C -0.168 4.168 20 C -0.170 4.170 21 H 0.128 0.872 22 H 0.114 0.886 23 H 0.092 0.908 24 H 0.119 0.881 25 H 0.089 0.911 26 H 0.260 0.740 27 H 0.163 0.837 28 H 0.164 0.836 29 H 0.023 0.977 30 H 0.024 0.976 31 H 0.076 0.924 32 H 0.140 0.860 33 H 0.133 0.867 34 H 0.126 0.874 35 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 2.272 -9.568 20.005 22.291 hybrid contribution -0.809 1.905 -0.327 2.095 sum 1.463 -7.663 19.678 21.168 Atomic orbital electron populations 1.23497 0.92457 1.07196 1.05844 1.86629 1.09691 1.08079 1.97522 1.23630 1.09636 0.93860 0.97840 1.21186 0.89924 1.00932 0.86129 1.55267 1.20290 1.84176 1.26738 1.04499 0.72983 0.78018 0.72964 1.93495 1.53896 1.68330 1.83143 1.93502 1.46856 1.87010 1.71667 1.30316 1.12759 1.21362 1.07231 1.18830 0.95956 0.97846 0.89389 1.21494 1.46253 0.94888 0.95164 0.90379 1.26129 0.95146 1.04128 0.94839 1.70105 1.48563 1.38980 0.99829 0.85359 0.79278 0.78139 0.77445 1.18755 1.21148 1.18659 1.23502 0.99434 1.01908 0.91928 1.23115 0.89491 1.03395 1.00991 0.87238 0.88582 0.90791 0.88054 0.91093 0.73992 0.83735 0.83577 0.97654 0.97562 0.92428 0.86020 0.86711 0.87422 0.86122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.97 10.57 113.37 1.20 -0.78 16 2 S -0.25 -5.11 22.26 -56.49 -1.26 -6.36 16 3 C -0.14 -2.33 2.19 -10.79 -0.02 -2.35 16 4 C 0.15 2.95 6.15 86.38 0.53 3.48 16 5 N -1.10 -26.91 5.83 -187.48 -1.09 -28.00 16 6 S 2.62 92.61 5.46 -56.49 -0.31 92.30 16 7 O -1.00 -42.12 17.50 -127.65 -2.23 -44.35 16 8 O -1.00 -42.21 18.08 -127.65 -2.31 -44.52 16 9 C -0.58 -21.11 6.01 71.98 0.43 -20.68 16 10 C 0.02 0.97 4.98 29.85 0.15 1.11 16 11 C -0.54 -29.33 9.11 25.60 0.23 -29.10 16 12 H 0.08 3.86 7.74 -2.91 -0.02 3.84 16 13 C 0.00 -0.23 5.46 84.66 0.46 0.24 16 14 N -0.94 -56.72 13.29 21.45 0.28 -56.43 16 15 Si 0.97 42.60 29.54 68.60 2.03 44.63 16 16 H -0.26 -10.89 7.11 99.48 0.71 -10.18 16 17 H -0.29 -12.42 7.11 99.48 0.71 -11.72 16 18 H -0.26 -10.81 7.11 99.48 0.71 -10.10 16 19 C -0.13 -1.39 9.94 30.60 0.30 -1.08 16 20 C -0.13 -1.67 9.33 30.59 0.29 -1.39 16 21 H 0.11 1.55 8.14 -2.39 -0.02 1.53 16 22 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 23 H 0.07 1.35 7.05 -2.39 -0.02 1.33 16 24 H 0.10 1.50 7.88 -2.39 -0.02 1.48 16 25 H 0.07 1.64 6.33 -2.39 -0.02 1.63 16 26 H 0.42 8.94 8.02 -96.74 -0.78 8.16 16 27 H 0.14 4.39 8.14 -2.39 -0.02 4.37 16 28 H 0.15 4.52 8.14 -2.39 -0.02 4.51 16 29 H 0.01 0.29 8.14 -2.39 -0.02 0.27 16 30 H 0.01 0.34 8.14 -2.38 -0.02 0.32 16 31 H 0.27 15.19 8.31 -92.71 -0.77 14.42 16 32 H 0.12 0.97 8.03 -2.38 -0.02 0.95 16 33 H 0.11 1.11 8.14 -2.39 -0.02 1.09 16 34 H 0.11 1.35 8.14 -2.39 -0.02 1.33 16 35 H 0.12 1.31 8.10 -2.39 -0.02 1.29 16 Total: -1.00 -76.61 323.60 -1.01 -77.62 By element: Atomic # 1 Polarization: 15.35 SS G_CDS: 0.31 Total: 15.66 kcal Atomic # 6 Polarization: -54.11 SS G_CDS: 3.57 Total: -50.54 kcal Atomic # 7 Polarization: -83.63 SS G_CDS: -0.81 Total: -84.43 kcal Atomic # 8 Polarization: -84.33 SS G_CDS: -4.54 Total: -88.87 kcal Atomic # 14 Polarization: 42.60 SS G_CDS: 2.03 Total: 44.63 kcal Atomic # 16 Polarization: 87.51 SS G_CDS: -1.57 Total: 85.94 kcal Total: -76.61 -1.01 -77.62 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194018840.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.417 kcal (2) G-P(sol) polarization free energy of solvation -76.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.622 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds