Wall clock time and date at job start Wed Apr 15 2020 11:43:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 N 1.46504 * 109.46739 * 122.58112 * 3 2 1 5 5 C 1.36938 * 119.99789 * 263.96946 * 4 3 2 6 6 H 1.08001 * 119.99364 * 198.12428 * 5 4 3 7 7 C 1.38805 * 120.00426 * 18.12621 * 5 4 3 8 8 N 1.31623 * 119.99678 * 23.29093 * 7 5 4 9 9 Si 1.86798 * 120.00211 * 203.29373 * 7 5 4 10 10 H 1.48504 * 109.46959 * 90.00336 * 9 7 5 11 11 H 1.48501 * 109.47058 * 209.99631 * 9 7 5 12 12 H 1.48497 * 109.47097 * 329.99980 * 9 7 5 13 13 C 1.46503 * 119.99913 * 83.97319 * 4 3 2 14 14 C 1.50705 * 109.46815 * 89.99725 * 13 4 3 15 15 C 1.38174 * 120.01405 * 259.71867 * 14 13 4 16 16 C 1.38222 * 120.06993 * 179.76821 * 15 14 13 17 17 C 1.38417 * 120.09363 * 0.51729 * 16 15 14 18 18 Cl 1.73598 * 119.98386 * 179.76556 * 17 16 15 19 19 C 1.38237 * 120.02937 * 359.73960 * 17 16 15 20 20 C 1.38717 * 120.01567 * 79.99944 * 14 13 4 21 21 O 1.35903 * 120.04620 * 359.97438 * 20 14 13 22 22 C 1.42905 * 116.99328 * 179.97438 * 21 20 14 23 23 H 4.40640 * 5.51377 * 180.02562 * 4 1 2 24 24 H 1.08997 * 109.47175 * 2.58600 * 3 2 1 25 25 H 1.09000 * 109.46934 * 242.58168 * 3 2 1 26 26 H 0.97001 * 120.00085 * 180.02562 * 8 7 5 27 27 H 1.08993 * 109.47043 * 209.99631 * 13 4 3 28 28 H 1.08998 * 109.46952 * 330.00178 * 13 4 3 29 29 H 1.08003 * 119.96557 * 0.03556 * 15 14 13 30 30 H 1.08002 * 119.95795 * 180.25576 * 16 15 14 31 31 H 1.07997 * 120.03389 * 180.02562 * 19 17 16 32 32 H 1.09010 * 109.46634 * 179.97438 * 22 21 20 33 33 H 1.08997 * 109.47447 * 299.99431 * 22 21 20 34 34 H 1.08999 * 109.47149 * 60.00306 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1340 0.7447 -1.1639 5 6 3.4799 0.0763 -2.3079 6 1 4.1013 0.5585 -3.0480 7 6 3.0319 -1.2208 -2.5164 8 7 1.9508 -1.6505 -1.9009 9 14 3.9633 -2.3565 -3.6705 10 1 4.9959 -3.1010 -2.9056 11 1 3.0163 -3.3186 -4.2893 12 1 4.6183 -1.5531 -4.7338 13 6 3.2518 2.2037 -1.1038 14 6 4.6245 2.5767 -0.6060 15 6 4.8055 2.9411 0.7145 16 6 6.0648 3.2788 1.1734 17 6 7.1458 3.2630 0.3091 18 17 8.7251 3.6935 0.8872 19 6 6.9684 2.9041 -1.0140 20 6 5.7059 2.5598 -1.4746 21 8 5.5288 2.2066 -2.7749 22 6 6.6870 2.2122 -3.6121 23 1 -1.0501 0.0000 0.0003 24 1 3.0098 -1.0258 -0.0464 25 1 3.0091 0.4740 0.9122 26 1 1.6378 -2.5571 -2.0462 27 1 3.1003 2.6217 -2.0989 28 1 2.4984 2.6014 -0.4239 29 1 3.9627 2.9580 1.3897 30 1 6.2048 3.5594 2.2069 31 1 7.8119 2.8914 -1.6884 32 1 6.4069 1.9113 -4.6217 33 1 7.1129 3.2152 -3.6365 34 1 7.4245 1.5137 -3.2167 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000281264545.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:15 Heat of formation + Delta-G solvation = 66.431036 kcal Electronic energy + Delta-G solvation = -19463.635519 eV Core-core repulsion = 16390.629341 eV Total energy + Delta-G solvation = -3073.006179 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 279.077 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.93849 -37.33987 -36.43656 -35.68415 -32.13735 -31.50203 -30.11506 -29.73309 -27.11991 -26.24905 -25.41793 -22.25362 -22.01672 -20.53403 -17.84819 -17.41919 -16.34589 -16.05497 -15.56948 -15.36639 -14.80731 -14.52477 -13.81605 -13.65805 -13.49952 -13.20831 -13.02080 -12.66279 -11.89742 -11.77712 -11.66350 -11.38492 -11.17158 -10.87788 -10.82939 -10.77129 -10.58121 -10.56565 -10.13196 -9.84650 -8.93737 -8.73312 -8.53515 -8.39627 -7.79235 -6.94228 -5.71589 -3.11155 1.43130 1.65171 2.24471 3.40101 3.47237 3.48882 3.64184 3.89784 4.25954 4.41112 4.60255 4.99307 5.15867 5.24603 5.33503 5.39845 5.45454 5.60703 5.72521 5.77722 5.83317 5.86321 6.01524 6.12300 6.37929 6.55246 6.62612 6.74074 6.87588 6.99749 7.24460 7.44432 7.73591 7.97016 8.35361 9.17523 9.24105 9.84499 10.30166 11.32763 Molecular weight = 279.08amu Principal moments of inertia in cm(-1) A = 0.017778 B = 0.006174 C = 0.005077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1574.622949 B = 4533.801646 C = 5513.806272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.301 4.301 2 C -0.096 4.096 3 C 0.267 3.733 4 N -0.575 5.575 5 C -0.254 4.254 6 H 0.090 0.910 7 C -0.001 4.001 8 N -0.890 5.890 9 Si 0.894 3.106 10 H -0.290 1.290 11 H -0.294 1.294 12 H -0.280 1.280 13 C 0.188 3.812 14 C -0.106 4.106 15 C -0.070 4.070 16 C -0.153 4.153 17 C -0.007 4.007 18 Cl -0.087 7.087 19 C -0.210 4.210 20 C 0.162 3.838 21 O -0.284 6.284 22 C 0.025 3.975 23 H 0.190 0.810 24 H 0.092 0.908 25 H 0.036 0.964 26 H 0.252 0.748 27 H 0.064 0.936 28 H 0.049 0.951 29 H 0.133 0.867 30 H 0.126 0.874 31 H 0.131 0.869 32 H 0.098 0.902 33 H 0.048 0.952 34 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.001 9.903 3.511 13.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.320 4.320 2 C -0.098 4.098 3 C 0.142 3.858 4 N -0.294 5.294 5 C -0.383 4.383 6 H 0.107 0.893 7 C -0.199 4.199 8 N -0.534 5.534 9 Si 0.724 3.276 10 H -0.217 1.217 11 H -0.221 1.221 12 H -0.206 1.206 13 C 0.061 3.939 14 C -0.110 4.110 15 C -0.089 4.089 16 C -0.172 4.172 17 C -0.033 4.033 18 Cl -0.058 7.058 19 C -0.229 4.229 20 C 0.115 3.885 21 O -0.196 6.196 22 C -0.070 4.070 23 H 0.207 0.793 24 H 0.110 0.890 25 H 0.054 0.946 26 H 0.062 0.938 27 H 0.082 0.918 28 H 0.067 0.933 29 H 0.151 0.849 30 H 0.144 0.856 31 H 0.149 0.851 32 H 0.116 0.884 33 H 0.067 0.933 34 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 8.894 9.697 3.386 13.587 hybrid contribution 0.690 -0.819 -0.688 1.272 sum 9.584 8.878 2.699 13.340 Atomic orbital electron populations 1.24176 0.95326 1.06264 1.06208 1.24286 0.95275 0.95290 0.94989 1.17741 0.82826 0.97888 0.87354 1.44038 1.74142 0.99463 1.11748 1.19508 1.24748 0.95997 0.98022 0.89263 1.24897 0.96411 0.99304 0.99324 1.70155 1.19944 1.17069 1.46244 0.86410 0.79550 0.81158 0.80460 1.21725 1.22117 1.20572 1.19638 0.88729 0.85998 0.99556 1.20623 0.98366 0.99552 0.92474 1.20837 0.96369 0.97248 0.94463 1.20833 0.91671 1.05226 0.99439 1.20469 0.85741 1.03344 0.93792 1.98335 1.26558 1.91825 1.89083 1.20986 0.97260 1.09148 0.95546 1.18683 0.92123 0.93178 0.84545 1.86357 1.33862 1.82170 1.17178 1.23035 0.88408 1.00653 0.94946 0.79307 0.88963 0.94634 0.93767 0.91768 0.93289 0.84918 0.85555 0.85128 0.88355 0.93297 0.92880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.30 -6.84 19.25 29.55 0.57 -6.27 16 2 C -0.10 -2.31 11.55 -37.12 -0.43 -2.74 16 3 C 0.27 6.27 5.41 -6.82 -0.04 6.24 16 4 N -0.58 -13.72 2.47 -177.95 -0.44 -14.16 16 5 C -0.25 -6.68 9.38 -15.06 -0.14 -6.82 16 6 H 0.09 2.32 5.83 -52.49 -0.31 2.01 16 7 C 0.00 -0.03 4.80 -17.43 -0.08 -0.11 16 8 N -0.89 -25.34 9.63 55.49 0.53 -24.80 16 9 Si 0.89 21.59 29.61 -169.99 -5.03 16.55 16 10 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 11 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 12 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 13 C 0.19 3.77 5.49 -5.19 -0.03 3.74 16 14 C -0.11 -1.88 5.48 -104.47 -0.57 -2.45 16 15 C -0.07 -1.06 9.66 -39.61 -0.38 -1.44 16 16 C -0.15 -2.13 9.83 -39.52 -0.39 -2.52 16 17 C -0.01 -0.10 6.32 -39.52 -0.25 -0.35 16 18 Cl -0.09 -1.10 28.95 -51.86 -1.50 -2.60 16 19 C -0.21 -3.17 8.82 -39.40 -0.35 -3.52 16 20 C 0.16 2.80 6.66 -39.22 -0.26 2.54 16 21 O -0.28 -5.06 7.44 -19.43 -0.14 -5.20 16 22 C 0.03 0.33 9.81 101.05 0.99 1.32 16 23 H 0.19 3.61 7.80 -54.09 -0.42 3.19 16 24 H 0.09 2.39 6.53 -51.93 -0.34 2.05 16 25 H 0.04 0.73 8.12 -51.93 -0.42 0.31 16 26 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 27 H 0.06 1.34 7.75 -51.93 -0.40 0.94 16 28 H 0.05 0.92 7.93 -51.93 -0.41 0.50 16 29 H 0.13 1.75 8.03 -52.48 -0.42 1.33 16 30 H 0.13 1.48 8.06 -52.49 -0.42 1.06 16 31 H 0.13 1.73 6.30 -52.49 -0.33 1.40 16 32 H 0.10 1.17 8.14 -51.92 -0.42 0.75 16 33 H 0.05 0.53 7.66 -51.93 -0.40 0.13 16 34 H 0.05 0.66 7.66 -51.93 -0.40 0.27 16 LS Contribution 310.01 15.07 4.67 4.67 Total: -1.00 -29.83 310.01 -7.11 -36.93 By element: Atomic # 1 Polarization: 4.83 SS G_CDS: -3.83 Total: 1.00 kcal Atomic # 6 Polarization: -11.03 SS G_CDS: -1.36 Total: -12.39 kcal Atomic # 7 Polarization: -39.06 SS G_CDS: 0.09 Total: -38.97 kcal Atomic # 8 Polarization: -5.06 SS G_CDS: -0.14 Total: -5.20 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.03 Total: 16.55 kcal Atomic # 17 Polarization: -1.10 SS G_CDS: -1.50 Total: -2.60 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -29.83 -7.11 -36.93 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281264545.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.364 kcal (2) G-P(sol) polarization free energy of solvation -29.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.933 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds