Wall clock time and date at job start Wed Apr 15 2020 11:43:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 N 1.46504 * 109.46739 * 122.58112 * 3 2 1 5 5 C 1.36938 * 119.99789 * 263.96946 * 4 3 2 6 6 H 1.08001 * 119.99364 * 198.12428 * 5 4 3 7 7 C 1.38805 * 120.00426 * 18.12621 * 5 4 3 8 8 N 1.31623 * 119.99678 * 23.29093 * 7 5 4 9 9 Si 1.86798 * 120.00211 * 203.29373 * 7 5 4 10 10 H 1.48504 * 109.46959 * 90.00336 * 9 7 5 11 11 H 1.48501 * 109.47058 * 209.99631 * 9 7 5 12 12 H 1.48497 * 109.47097 * 329.99980 * 9 7 5 13 13 C 1.46503 * 119.99913 * 83.97319 * 4 3 2 14 14 C 1.50705 * 109.46815 * 89.99725 * 13 4 3 15 15 C 1.38174 * 120.01405 * 259.71867 * 14 13 4 16 16 C 1.38222 * 120.06993 * 179.76821 * 15 14 13 17 17 C 1.38417 * 120.09363 * 0.51729 * 16 15 14 18 18 Cl 1.73598 * 119.98386 * 179.76556 * 17 16 15 19 19 C 1.38237 * 120.02937 * 359.73960 * 17 16 15 20 20 C 1.38717 * 120.01567 * 79.99944 * 14 13 4 21 21 O 1.35903 * 120.04620 * 359.97438 * 20 14 13 22 22 C 1.42905 * 116.99328 * 179.97438 * 21 20 14 23 23 H 4.40640 * 5.51377 * 180.02562 * 4 1 2 24 24 H 1.08997 * 109.47175 * 2.58600 * 3 2 1 25 25 H 1.09000 * 109.46934 * 242.58168 * 3 2 1 26 26 H 0.97001 * 120.00085 * 180.02562 * 8 7 5 27 27 H 1.08993 * 109.47043 * 209.99631 * 13 4 3 28 28 H 1.08998 * 109.46952 * 330.00178 * 13 4 3 29 29 H 1.08003 * 119.96557 * 0.03556 * 15 14 13 30 30 H 1.08002 * 119.95795 * 180.25576 * 16 15 14 31 31 H 1.07997 * 120.03389 * 180.02562 * 19 17 16 32 32 H 1.09010 * 109.46634 * 179.97438 * 22 21 20 33 33 H 1.08997 * 109.47447 * 299.99431 * 22 21 20 34 34 H 1.08999 * 109.47149 * 60.00306 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1340 0.7447 -1.1639 5 6 3.4799 0.0763 -2.3079 6 1 4.1013 0.5585 -3.0480 7 6 3.0319 -1.2208 -2.5164 8 7 1.9508 -1.6505 -1.9009 9 14 3.9633 -2.3565 -3.6705 10 1 4.9959 -3.1010 -2.9056 11 1 3.0163 -3.3186 -4.2893 12 1 4.6183 -1.5531 -4.7338 13 6 3.2518 2.2037 -1.1038 14 6 4.6245 2.5767 -0.6060 15 6 4.8055 2.9411 0.7145 16 6 6.0648 3.2788 1.1734 17 6 7.1458 3.2630 0.3091 18 17 8.7251 3.6935 0.8872 19 6 6.9684 2.9041 -1.0140 20 6 5.7059 2.5598 -1.4746 21 8 5.5288 2.2066 -2.7749 22 6 6.6870 2.2122 -3.6121 23 1 -1.0501 0.0000 0.0003 24 1 3.0098 -1.0258 -0.0464 25 1 3.0091 0.4740 0.9122 26 1 1.6378 -2.5571 -2.0462 27 1 3.1003 2.6217 -2.0989 28 1 2.4984 2.6014 -0.4239 29 1 3.9627 2.9580 1.3897 30 1 6.2048 3.5594 2.2069 31 1 7.8119 2.8914 -1.6884 32 1 6.4069 1.9113 -4.6217 33 1 7.1129 3.2152 -3.6365 34 1 7.4245 1.5137 -3.2167 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000281264545.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:14 Heat of formation + Delta-G solvation = 51.352262 kcal Electronic energy + Delta-G solvation = -19464.289384 eV Core-core repulsion = 16390.629341 eV Total energy + Delta-G solvation = -3073.660043 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 279.077 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.15705 -38.52783 -37.90543 -37.07272 -33.74881 -33.38062 -31.55544 -31.05553 -28.25988 -27.99387 -27.10037 -23.88308 -23.17854 -22.00145 -19.27644 -19.03238 -18.09723 -17.34845 -17.02282 -16.59011 -16.38096 -15.77054 -15.51717 -15.28890 -14.94084 -14.66895 -14.19584 -14.11851 -13.37801 -13.28562 -12.95203 -12.90750 -12.73165 -12.60778 -12.29231 -12.10395 -11.98874 -11.86910 -11.85289 -11.54771 -10.75865 -10.63880 -10.28563 -9.72334 -9.07722 -8.80435 -7.74604 -5.13741 0.22694 0.48022 1.14075 1.47024 1.49871 1.56754 2.35344 2.50995 2.56714 2.64129 2.77987 3.36861 3.85511 3.98235 4.01213 4.14936 4.17027 4.29087 4.41637 4.42310 4.67348 4.71951 4.72259 4.80840 4.96030 5.09600 5.22140 5.31219 5.38143 5.57564 5.69763 5.79268 5.91227 6.40067 6.56035 7.20443 7.40046 7.92024 8.34443 9.27491 Molecular weight = 279.08amu Principal moments of inertia in cm(-1) A = 0.017778 B = 0.006174 C = 0.005077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1574.622949 B = 4533.801646 C = 5513.806272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.294 4.294 2 C -0.132 4.132 3 C 0.272 3.728 4 N -0.588 5.588 5 C -0.245 4.245 6 H 0.089 0.911 7 C -0.054 4.054 8 N -0.917 5.917 9 Si 0.947 3.053 10 H -0.293 1.293 11 H -0.304 1.304 12 H -0.269 1.269 13 C 0.194 3.806 14 C -0.131 4.131 15 C -0.066 4.066 16 C -0.149 4.149 17 C -0.009 4.009 18 Cl -0.068 7.068 19 C -0.210 4.210 20 C 0.145 3.855 21 O -0.316 6.316 22 C 0.018 3.982 23 H 0.221 0.779 24 H 0.061 0.939 25 H 0.064 0.936 26 H 0.242 0.758 27 H 0.047 0.953 28 H 0.059 0.941 29 H 0.151 0.849 30 H 0.153 0.847 31 H 0.147 0.853 32 H 0.106 0.894 33 H 0.072 0.928 34 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.295 11.118 4.257 15.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.313 4.313 2 C -0.135 4.135 3 C 0.147 3.853 4 N -0.307 5.307 5 C -0.375 4.375 6 H 0.107 0.893 7 C -0.249 4.249 8 N -0.564 5.564 9 Si 0.777 3.223 10 H -0.220 1.220 11 H -0.232 1.232 12 H -0.194 1.194 13 C 0.068 3.932 14 C -0.134 4.134 15 C -0.084 4.084 16 C -0.168 4.168 17 C -0.036 4.036 18 Cl -0.039 7.039 19 C -0.230 4.230 20 C 0.099 3.901 21 O -0.229 6.229 22 C -0.077 4.077 23 H 0.237 0.763 24 H 0.079 0.921 25 H 0.082 0.918 26 H 0.051 0.949 27 H 0.065 0.935 28 H 0.078 0.922 29 H 0.169 0.831 30 H 0.171 0.829 31 H 0.165 0.835 32 H 0.124 0.876 33 H 0.090 0.910 34 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 10.223 10.955 4.132 15.543 hybrid contribution 0.359 -1.066 -0.879 1.427 sum 10.582 9.890 3.253 14.845 Atomic orbital electron populations 1.24990 0.96354 1.04908 1.05007 1.24675 0.96111 0.96546 0.96173 1.17639 0.82807 0.96522 0.88372 1.44202 1.74318 1.01034 1.11183 1.19747 1.23293 0.96045 0.98418 0.89343 1.25485 0.97348 1.00643 1.01386 1.70305 1.21358 1.16519 1.48196 0.85547 0.78135 0.79404 0.79173 1.22035 1.23180 1.19383 1.19598 0.90752 0.83774 0.99069 1.20414 0.96961 1.02167 0.93877 1.21037 0.97639 0.96192 0.93575 1.21113 0.90908 1.04123 1.00618 1.20666 0.86829 1.02395 0.93686 1.98345 1.25195 1.91558 1.88796 1.21129 0.96931 1.08636 0.96260 1.18863 0.92900 0.93857 0.84521 1.86284 1.36219 1.82540 1.17844 1.23270 0.87490 1.02278 0.94637 0.76250 0.92067 0.91843 0.94865 0.93485 0.92248 0.83115 0.82916 0.83499 0.87565 0.90956 0.92459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.29 -13.12 19.25 74.32 1.43 -11.69 16 2 C -0.13 -6.39 11.55 31.13 0.36 -6.03 16 3 C 0.27 12.84 5.41 84.57 0.46 13.30 16 4 N -0.59 -28.21 2.47 -716.89 -1.77 -29.98 16 5 C -0.25 -13.02 9.38 84.03 0.79 -12.23 16 6 H 0.09 4.64 5.83 -2.91 -0.02 4.63 16 7 C -0.05 -2.95 4.80 84.86 0.41 -2.55 16 8 N -0.92 -53.31 9.63 21.65 0.21 -53.10 16 9 Si 0.95 45.09 29.61 68.60 2.03 47.12 16 10 H -0.29 -13.92 7.11 99.48 0.71 -13.21 16 11 H -0.30 -14.86 7.11 99.48 0.71 -14.15 16 12 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 13 C 0.19 7.75 5.49 85.63 0.47 8.22 16 14 C -0.13 -4.50 5.48 -19.76 -0.11 -4.61 16 15 C -0.07 -1.84 9.66 22.25 0.22 -1.62 16 16 C -0.15 -3.72 9.83 22.31 0.22 -3.50 16 17 C -0.01 -0.23 6.32 22.31 0.14 -0.09 16 18 Cl -0.07 -1.52 28.95 -2.72 -0.08 -1.59 16 19 C -0.21 -5.94 8.82 22.39 0.20 -5.74 16 20 C 0.15 4.90 6.66 22.50 0.15 5.05 16 21 O -0.32 -11.15 7.44 -92.46 -0.69 -11.83 16 22 C 0.02 0.44 9.81 113.37 1.11 1.56 16 23 H 0.22 7.97 7.80 -4.41 -0.03 7.93 16 24 H 0.06 3.26 6.53 -2.39 -0.02 3.25 16 25 H 0.06 2.56 8.12 -2.39 -0.02 2.54 16 26 H 0.24 14.01 8.31 -92.71 -0.77 13.24 16 27 H 0.05 2.00 7.75 -2.39 -0.02 1.98 16 28 H 0.06 2.19 7.93 -2.39 -0.02 2.17 16 29 H 0.15 3.58 8.03 -2.91 -0.02 3.55 16 30 H 0.15 2.98 8.06 -2.91 -0.02 2.96 16 31 H 0.15 3.54 6.30 -2.91 -0.02 3.52 16 32 H 0.11 2.42 8.14 -2.38 -0.02 2.40 16 33 H 0.07 1.43 7.66 -2.39 -0.02 1.41 16 34 H 0.06 1.36 7.66 -2.39 -0.02 1.34 16 Total: -1.00 -63.86 310.01 6.65 -57.21 By element: Atomic # 1 Polarization: 11.01 SS G_CDS: 1.11 Total: 12.11 kcal Atomic # 6 Polarization: -25.78 SS G_CDS: 5.84 Total: -19.94 kcal Atomic # 7 Polarization: -81.52 SS G_CDS: -1.56 Total: -83.08 kcal Atomic # 8 Polarization: -11.15 SS G_CDS: -0.69 Total: -11.83 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 2.03 Total: 47.12 kcal Atomic # 17 Polarization: -1.52 SS G_CDS: -0.08 Total: -1.59 kcal Total: -63.86 6.65 -57.21 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281264545.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.566 kcal (2) G-P(sol) polarization free energy of solvation -63.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.214 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds