Wall clock time and date at job start Wed Apr 15 2020 11:43:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17406 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 N 1.46495 * 109.47127 * 329.37562 * 3 2 1 5 5 C 1.36945 * 119.99571 * 273.42241 * 4 3 2 6 6 H 1.08000 * 120.00153 * 186.85159 * 5 4 3 7 7 C 1.38807 * 119.99916 * 6.85885 * 5 4 3 8 8 N 1.31620 * 120.00600 * 24.25897 * 7 5 4 9 9 Si 1.86800 * 119.99996 * 204.26166 * 7 5 4 10 10 H 1.48495 * 109.47184 * 59.99501 * 9 7 5 11 11 H 1.48497 * 109.47514 * 179.97438 * 9 7 5 12 12 H 1.48509 * 109.46920 * 299.99853 * 9 7 5 13 13 C 1.46496 * 120.00453 * 93.42860 * 4 3 2 14 14 C 1.50697 * 109.47060 * 269.99694 * 13 4 3 15 15 C 1.38170 * 120.02349 * 260.02450 * 14 13 4 16 16 C 1.38345 * 120.04334 * 179.97438 * 15 14 13 17 17 Cl 1.73598 * 119.95823 * 179.97438 * 16 15 14 18 18 C 1.38386 * 120.08522 * 359.97438 * 16 15 14 19 19 C 1.38123 * 120.04409 * 359.74411 * 18 16 15 20 20 C 1.38702 * 120.02278 * 79.99654 * 14 13 4 21 21 O 1.35924 * 120.03882 * 0.02562 * 20 14 13 22 22 C 1.42903 * 116.99986 * 179.97438 * 21 20 14 23 23 H 4.40635 * 5.51425 * 179.97438 * 4 1 2 24 24 H 1.08993 * 109.46909 * 209.37009 * 3 2 1 25 25 H 1.09001 * 109.46624 * 89.37150 * 3 2 1 26 26 H 0.96999 * 120.00355 * 180.02562 * 8 7 5 27 27 H 1.09003 * 109.47082 * 149.99855 * 13 4 3 28 28 H 1.08996 * 109.46983 * 29.99615 * 13 4 3 29 29 H 1.07999 * 119.97459 * 359.95297 * 15 14 13 30 30 H 1.08000 * 119.97742 * 180.02562 * 18 16 15 31 31 H 1.08002 * 120.02516 * 180.27336 * 19 18 16 32 32 H 1.08999 * 109.47133 * 60.00125 * 22 21 20 33 33 H 1.08991 * 109.47216 * 180.02562 * 22 21 20 34 34 H 1.09000 * 109.47014 * 300.00231 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1349 -1.1877 0.7036 5 6 3.2963 -1.1603 2.0632 6 1 3.7596 -1.9945 2.5689 7 6 2.8644 -0.0603 2.7913 8 7 1.9117 0.7123 2.3139 9 14 3.6354 0.3238 4.4489 10 1 5.0915 0.5577 4.2753 11 1 3.0035 1.5409 5.0187 12 1 3.4244 -0.8217 5.3703 13 6 3.4512 -2.4052 -0.0472 14 6 2.2227 -3.2734 -0.1369 15 6 2.0735 -4.3503 0.7158 16 6 0.9456 -5.1473 0.6342 17 17 0.7607 -6.5002 1.7062 18 6 -0.0354 -4.8675 -0.3008 19 6 0.1074 -3.7884 -1.1511 20 6 1.2407 -2.9916 -1.0750 21 8 1.3857 -1.9326 -1.9147 22 6 0.3353 -1.7024 -2.8559 23 1 -1.0498 -0.0002 0.0004 24 1 3.0089 0.8964 0.5040 25 1 3.0093 -0.0105 -1.0276 26 1 1.6102 1.4812 2.8226 27 1 4.2451 -2.9507 0.4629 28 1 3.7810 -2.1377 -1.0510 29 1 2.8380 -4.5702 1.4463 30 1 -0.9153 -5.4906 -0.3628 31 1 -0.6605 -3.5676 -1.8778 32 1 -0.5988 -1.5272 -2.3222 33 1 0.5764 -0.8299 -3.4631 34 1 0.2275 -2.5747 -3.5005 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000281380032.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:16 Heat of formation + Delta-G solvation = 58.835878 kcal Electronic energy + Delta-G solvation = -19922.381871 eV Core-core repulsion = 16849.046342 eV Total energy + Delta-G solvation = -3073.335529 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 279.077 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.11640 -38.50225 -37.84485 -36.96614 -33.89363 -33.16815 -31.70891 -30.73106 -28.33758 -27.72833 -27.26854 -23.94337 -23.04974 -21.99279 -19.34208 -18.84088 -18.07147 -17.33591 -17.10578 -16.81566 -16.39085 -15.49815 -15.43416 -15.21941 -14.85118 -14.68430 -14.18258 -13.88107 -13.38994 -13.22243 -13.11341 -12.87754 -12.65098 -12.60107 -12.31655 -12.16755 -12.09459 -11.85264 -11.61308 -11.46056 -10.66801 -10.54886 -10.07040 -9.81685 -9.03493 -8.82595 -7.76504 -5.11811 0.37529 0.40137 1.27247 1.49160 1.52184 1.57541 2.44328 2.55469 2.68287 2.79882 2.87707 3.32010 3.86254 3.90848 4.02543 4.25512 4.28359 4.37979 4.47414 4.51461 4.63478 4.67826 4.81525 4.97420 5.05221 5.06430 5.25842 5.34277 5.46280 5.49250 5.69321 5.79890 5.83074 6.29604 6.59810 7.15612 7.63105 7.89204 8.29428 9.21741 Molecular weight = 279.08amu Principal moments of inertia in cm(-1) A = 0.014572 B = 0.007903 C = 0.005838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1921.016885 B = 3542.032286 C = 4795.176976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.326 4.326 2 C -0.075 4.075 3 C 0.277 3.723 4 N -0.589 5.589 5 C -0.259 4.259 6 H 0.077 0.923 7 C -0.046 4.046 8 N -0.909 5.909 9 Si 0.954 3.046 10 H -0.279 1.279 11 H -0.301 1.301 12 H -0.285 1.285 13 C 0.190 3.810 14 C -0.130 4.130 15 C -0.076 4.076 16 C -0.084 4.084 17 Cl -0.079 7.079 18 C -0.082 4.082 19 C -0.203 4.203 20 C 0.146 3.854 21 O -0.313 6.313 22 C 0.024 3.976 23 H 0.202 0.798 24 H 0.062 0.938 25 H 0.060 0.940 26 H 0.244 0.756 27 H 0.065 0.935 28 H 0.070 0.930 29 H 0.129 0.871 30 H 0.152 0.848 31 H 0.155 0.845 32 H 0.052 0.948 33 H 0.109 0.891 34 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.993 -8.905 -10.095 13.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.345 4.345 2 C -0.078 4.078 3 C 0.152 3.848 4 N -0.308 5.308 5 C -0.389 4.389 6 H 0.095 0.905 7 C -0.242 4.242 8 N -0.554 5.554 9 Si 0.784 3.216 10 H -0.205 1.205 11 H -0.227 1.227 12 H -0.212 1.212 13 C 0.064 3.936 14 C -0.134 4.134 15 C -0.095 4.095 16 C -0.111 4.111 17 Cl -0.051 7.051 18 C -0.101 4.101 19 C -0.222 4.222 20 C 0.099 3.901 21 O -0.225 6.225 22 C -0.071 4.071 23 H 0.219 0.781 24 H 0.080 0.920 25 H 0.078 0.922 26 H 0.054 0.946 27 H 0.083 0.917 28 H 0.088 0.912 29 H 0.147 0.853 30 H 0.169 0.831 31 H 0.173 0.827 32 H 0.070 0.930 33 H 0.127 0.873 34 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -2.835 -8.711 -9.932 13.511 hybrid contribution -0.527 0.219 1.414 1.524 sum -3.362 -8.493 -8.518 12.489 Atomic orbital electron populations 1.24396 0.95743 1.05287 1.09095 1.24056 0.95231 0.95714 0.92768 1.17785 0.83474 0.90104 0.93444 1.44523 1.74562 1.08192 1.03490 1.19450 1.32518 1.02954 0.83961 0.90547 1.25378 0.98151 0.99784 1.00883 1.70297 1.26916 1.18703 1.39512 0.85538 0.78634 0.76659 0.80793 1.20503 1.22745 1.21170 1.19904 0.91700 0.85653 0.96349 1.20425 1.00543 0.96824 0.95566 1.20782 0.97093 0.93632 0.98023 1.20802 0.98402 0.93988 0.97888 1.98316 1.97581 1.44378 1.64810 1.20936 0.98172 0.97341 0.93696 1.21351 0.98746 0.97852 1.04265 1.18962 0.93679 0.87062 0.90396 1.86146 1.45987 1.44362 1.46026 1.23209 0.90050 1.02975 0.90858 0.78113 0.92042 0.92231 0.94611 0.91671 0.91174 0.85319 0.83073 0.82711 0.92965 0.87308 0.91088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.33 -14.60 18.50 74.32 1.37 -13.23 16 2 C -0.07 -3.54 8.61 31.12 0.27 -3.27 16 3 C 0.28 13.06 4.98 84.57 0.42 13.48 16 4 N -0.59 -28.02 2.48 -716.95 -1.78 -29.80 16 5 C -0.26 -13.69 9.70 84.03 0.81 -12.87 16 6 H 0.08 3.95 7.93 -2.91 -0.02 3.93 16 7 C -0.05 -2.51 4.95 84.86 0.42 -2.09 16 8 N -0.91 -51.80 8.90 21.65 0.19 -51.61 16 9 Si 0.95 44.80 29.62 68.60 2.03 46.83 16 10 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 11 H -0.30 -14.43 7.11 99.48 0.71 -13.72 16 12 H -0.29 -13.27 7.11 99.48 0.71 -12.57 16 13 C 0.19 7.47 5.51 85.63 0.47 7.94 16 14 C -0.13 -4.90 5.48 -19.77 -0.11 -5.00 16 15 C -0.08 -2.72 9.45 22.28 0.21 -2.51 16 16 C -0.08 -2.72 6.32 22.33 0.14 -2.58 16 17 Cl -0.08 -2.29 28.95 -2.72 -0.08 -2.37 16 18 C -0.08 -2.37 9.82 22.28 0.22 -2.16 16 19 C -0.20 -5.94 9.04 22.36 0.20 -5.74 16 20 C 0.15 5.03 6.04 22.50 0.14 5.16 16 21 O -0.31 -10.22 6.73 -92.70 -0.62 -10.84 16 22 C 0.02 0.55 9.52 113.37 1.08 1.63 16 23 H 0.20 7.75 7.80 -4.43 -0.03 7.72 16 24 H 0.06 3.25 6.41 -2.39 -0.02 3.23 16 25 H 0.06 2.49 7.73 -2.39 -0.02 2.47 16 26 H 0.24 13.91 8.31 -92.71 -0.77 13.14 16 27 H 0.06 2.43 7.89 -2.39 -0.02 2.41 16 28 H 0.07 2.53 7.58 -2.39 -0.02 2.51 16 29 H 0.13 4.54 8.04 -2.91 -0.02 4.52 16 30 H 0.15 3.45 8.06 -2.91 -0.02 3.43 16 31 H 0.16 3.54 6.30 -2.91 -0.02 3.52 16 32 H 0.05 1.23 7.40 -2.39 -0.02 1.22 16 33 H 0.11 2.17 8.14 -2.39 -0.02 2.15 16 34 H 0.07 1.27 7.68 -2.39 -0.02 1.25 16 Total: -1.00 -62.30 305.15 6.49 -55.80 By element: Atomic # 1 Polarization: 12.12 SS G_CDS: 1.10 Total: 13.23 kcal Atomic # 6 Polarization: -26.89 SS G_CDS: 5.65 Total: -21.24 kcal Atomic # 7 Polarization: -79.82 SS G_CDS: -1.59 Total: -81.41 kcal Atomic # 8 Polarization: -10.22 SS G_CDS: -0.62 Total: -10.84 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 2.03 Total: 46.83 kcal Atomic # 17 Polarization: -2.29 SS G_CDS: -0.08 Total: -2.37 kcal Total: -62.30 6.49 -55.80 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281380032.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.638 kcal (2) G-P(sol) polarization free energy of solvation -62.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.802 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds