Wall clock time and date at job start Wed Apr 15 2020 11:43:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.37101 * 119.99714 * 2 1 4 4 H 1.08001 * 119.99379 * 185.50194 * 3 2 1 5 5 C 1.38948 * 120.00306 * 5.50518 * 3 2 1 6 6 N 1.31413 * 119.99833 * 5.50802 * 5 3 2 7 7 Si 1.86800 * 119.99766 * 185.51571 * 5 3 2 8 8 H 1.48499 * 109.47314 * 59.99900 * 7 5 3 9 9 H 1.48500 * 109.46894 * 179.97438 * 7 5 3 10 10 H 1.48496 * 109.47051 * 299.99480 * 7 5 3 11 11 C 1.34769 * 119.99994 * 179.97438 * 2 1 3 12 12 O 1.21295 * 120.00134 * 185.60472 * 11 2 1 13 13 C 1.50698 * 120.00000 * 5.60905 * 11 2 1 14 14 C 1.50701 * 115.55018 * 65.67877 * 13 11 2 15 15 C 1.38264 * 119.99515 * 29.54594 * 14 13 11 16 16 C 1.38218 * 120.03053 * 179.72523 * 15 14 13 17 17 C 1.38240 * 120.01082 * 0.27547 * 16 15 14 18 18 C 1.38333 * 119.98576 * 359.97438 * 17 16 15 19 19 Cl 1.73598 * 120.01016 * 180.02562 * 18 17 16 20 20 C 1.38192 * 119.99493 * 209.82217 * 14 13 11 21 21 C 1.53005 * 117.50187 * 211.34726 * 13 11 2 22 22 C 1.53003 * 117.50107 * 280.01025 * 13 11 2 23 23 H 1.08995 * 109.47237 * 174.90059 * 1 2 3 24 24 H 1.09003 * 109.47186 * 294.90808 * 1 2 3 25 25 H 1.09006 * 109.47165 * 54.90239 * 1 2 3 26 26 H 0.97000 * 119.99326 * 180.02562 * 6 5 3 27 27 H 1.08004 * 119.98316 * 0.02562 * 15 14 13 28 28 H 1.07997 * 119.99708 * 180.25451 * 16 15 14 29 29 H 1.07997 * 120.00748 * 180.02562 * 17 16 15 30 30 H 1.07999 * 120.01217 * 0.02562 * 20 14 13 31 31 H 1.08991 * 117.49944 * 215.00493 * 21 13 11 32 32 H 1.08997 * 117.49264 * 0.02597 * 21 13 11 33 33 H 1.08995 * 117.49563 * 359.97438 * 22 13 11 34 34 H 1.08998 * 117.49756 * 144.97518 * 22 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1874 0.0000 4 1 3.2267 1.1895 -0.0897 5 6 1.4605 2.3879 0.1154 6 7 0.1646 2.3827 0.3331 7 14 2.3752 4.0093 -0.0390 8 1 3.0159 4.0909 -1.3762 9 1 1.4190 5.1342 0.1206 10 1 3.4177 4.0919 1.0153 11 6 2.1389 -1.1671 0.0005 12 8 3.3475 -1.1696 0.1031 13 6 1.3908 -2.4691 -0.1265 14 6 0.6892 -2.6901 -1.4418 15 6 1.1942 -2.1247 -2.5981 16 6 0.5546 -2.3316 -3.8057 17 6 -0.5939 -3.0993 -3.8572 18 6 -1.1026 -3.6609 -2.6999 19 17 -2.5444 -4.6256 -2.7640 20 6 -0.4620 -3.4530 -1.4912 21 6 1.9816 -3.6947 0.5736 22 6 0.7231 -3.0261 1.1325 23 1 -0.3633 -1.0235 -0.0913 24 1 -0.3634 0.4328 0.9321 25 1 -0.3634 0.5909 -0.8408 26 1 -0.3171 3.2208 0.4133 27 1 2.0917 -1.5252 -2.5583 28 1 0.9518 -1.8931 -4.7092 29 1 -1.0935 -3.2612 -4.8010 30 1 -0.8592 -3.8906 -0.5872 31 1 1.8630 -4.6605 0.0828 32 1 2.9112 -3.5590 1.1263 33 1 0.8254 -2.4509 2.0527 34 1 -0.2237 -3.5519 1.0094 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299545652.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:19 Heat of formation + Delta-G solvation = 10.178161 kcal Electronic energy + Delta-G solvation = -19657.150954 eV Core-core repulsion = 16581.705468 eV Total energy + Delta-G solvation = -3075.445486 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 279.077 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.52221 -39.74334 -37.72580 -37.16799 -36.55857 -33.54773 -31.72148 -31.62414 -28.46857 -26.90519 -25.13434 -23.86200 -23.23162 -22.64330 -20.11225 -18.99284 -18.55945 -17.52763 -16.80122 -16.38079 -16.11103 -15.96679 -15.79934 -15.29222 -14.84595 -14.71060 -14.42968 -13.78617 -13.57540 -13.40366 -12.92066 -12.80535 -12.75218 -12.59666 -12.49646 -12.30221 -12.26162 -12.14895 -11.88425 -11.49840 -11.40869 -11.06094 -10.35630 -9.89769 -9.82710 -9.54680 -8.26389 -5.93772 0.15896 0.26295 1.12094 1.36019 1.38658 1.49500 1.91896 2.22747 2.49611 2.85029 3.06905 3.16119 3.46848 3.79137 3.87654 4.00945 4.04704 4.16486 4.28747 4.42847 4.59023 4.67096 4.68188 4.80581 4.93399 4.99742 5.16353 5.17914 5.23612 5.35267 5.41402 5.48009 5.57265 5.78956 6.01201 6.45077 7.13346 7.46475 8.00778 8.64696 Molecular weight = 279.08amu Principal moments of inertia in cm(-1) A = 0.020807 B = 0.005569 C = 0.005079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1345.384792 B = 5026.812057 C = 5511.323756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.137 3.863 2 N -0.447 5.447 3 C -0.343 4.343 4 H 0.076 0.924 5 C -0.003 4.003 6 N -0.895 5.895 7 Si 0.992 3.008 8 H -0.271 1.271 9 H -0.267 1.267 10 H -0.274 1.274 11 C 0.466 3.534 12 O -0.639 6.639 13 C -0.125 4.125 14 C -0.024 4.024 15 C -0.122 4.122 16 C -0.099 4.099 17 C -0.113 4.113 18 C -0.033 4.033 19 Cl -0.061 7.061 20 C -0.111 4.111 21 C -0.128 4.128 22 C -0.143 4.143 23 H 0.058 0.942 24 H 0.056 0.944 25 H 0.041 0.959 26 H 0.272 0.728 27 H 0.095 0.905 28 H 0.151 0.849 29 H 0.159 0.841 30 H 0.153 0.847 31 H 0.128 0.872 32 H 0.087 0.913 33 H 0.090 0.910 34 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.401 -11.764 -5.763 15.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.006 4.006 2 N -0.164 5.164 3 C -0.471 4.471 4 H 0.094 0.906 5 C -0.204 4.204 6 N -0.534 5.534 7 Si 0.815 3.185 8 H -0.196 1.196 9 H -0.192 1.192 10 H -0.199 1.199 11 C 0.255 3.745 12 O -0.528 6.528 13 C -0.128 4.128 14 C -0.025 4.025 15 C -0.141 4.141 16 C -0.117 4.117 17 C -0.131 4.131 18 C -0.059 4.059 19 Cl -0.032 7.032 20 C -0.129 4.129 21 C -0.165 4.165 22 C -0.180 4.180 23 H 0.077 0.923 24 H 0.075 0.925 25 H 0.060 0.940 26 H 0.083 0.917 27 H 0.113 0.887 28 H 0.169 0.831 29 H 0.176 0.824 30 H 0.171 0.829 31 H 0.146 0.854 32 H 0.106 0.894 33 H 0.108 0.892 34 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -7.156 -11.651 -5.689 14.810 hybrid contribution 0.606 1.221 0.095 1.366 sum -6.550 -10.431 -5.593 13.527 Atomic orbital electron populations 1.21532 0.78829 0.98045 1.02207 1.43792 1.06952 1.04441 1.61170 1.19729 0.92858 0.83912 1.50573 0.90587 1.26063 0.96734 1.02237 0.95381 1.70246 1.07683 1.28354 1.47148 0.85014 0.77860 0.76666 0.78911 1.19614 1.19159 1.19932 1.19533 0.86861 0.84567 0.83489 1.90460 1.16315 1.87589 1.58454 1.19915 1.05296 0.93996 0.93618 1.18722 0.94540 0.97171 0.92030 1.21120 1.00066 0.99396 0.93516 1.21272 0.95001 0.97737 0.97714 1.21286 0.96253 0.97306 0.98245 1.20892 0.91053 0.98831 0.95143 1.98360 1.36330 1.69777 1.98757 1.20958 0.94332 0.99628 0.97976 1.23087 0.97579 0.94781 1.01086 1.23293 0.98338 1.01994 0.94370 0.92340 0.92523 0.94036 0.91738 0.88707 0.83087 0.82374 0.82922 0.85425 0.89433 0.89183 0.84567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.14 6.43 8.51 127.77 1.09 7.52 16 2 N -0.45 -23.73 3.03 -658.89 -1.99 -25.73 16 3 C -0.34 -19.83 9.55 84.04 0.80 -19.03 16 4 H 0.08 4.69 7.20 -2.91 -0.02 4.67 16 5 C 0.00 -0.16 5.42 84.93 0.46 0.30 16 6 N -0.89 -47.22 9.54 21.66 0.21 -47.02 16 7 Si 0.99 42.82 29.56 68.60 2.03 44.84 16 8 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 9 H -0.27 -10.77 7.11 99.48 0.71 -10.06 16 10 H -0.27 -11.82 7.11 99.48 0.71 -11.12 16 11 C 0.47 23.53 5.70 87.66 0.50 24.03 16 12 O -0.64 -37.41 16.31 -3.07 -0.05 -37.46 16 13 C -0.12 -4.66 1.23 -53.67 -0.07 -4.73 16 14 C -0.02 -0.79 4.02 -19.87 -0.08 -0.87 16 15 C -0.12 -4.26 9.32 22.27 0.21 -4.05 16 16 C -0.10 -2.66 10.05 22.27 0.22 -2.44 16 17 C -0.11 -2.60 9.83 22.29 0.22 -2.38 16 18 C -0.03 -0.79 6.32 22.32 0.14 -0.65 16 19 Cl -0.06 -1.25 28.96 -2.72 -0.08 -1.33 16 20 C -0.11 -2.93 9.08 22.29 0.20 -2.73 16 21 C -0.13 -3.96 9.73 30.62 0.30 -3.66 16 22 C -0.14 -4.21 8.93 30.62 0.27 -3.94 16 23 H 0.06 2.34 4.77 -2.39 -0.01 2.33 16 24 H 0.06 2.82 6.88 -2.39 -0.02 2.80 16 25 H 0.04 2.07 7.25 -2.38 -0.02 2.05 16 26 H 0.27 13.48 8.31 -92.71 -0.77 12.71 16 27 H 0.09 3.93 7.33 -2.91 -0.02 3.91 16 28 H 0.15 3.30 8.06 -2.91 -0.02 3.28 16 29 H 0.16 2.71 8.06 -2.91 -0.02 2.69 16 30 H 0.15 3.34 5.95 -2.91 -0.02 3.33 16 31 H 0.13 3.10 8.14 -2.39 -0.02 3.09 16 32 H 0.09 3.02 8.00 -2.39 -0.02 3.00 16 33 H 0.09 2.87 8.14 -2.39 -0.02 2.85 16 34 H 0.14 2.97 6.10 -2.39 -0.01 2.96 16 Total: -1.00 -67.18 300.59 5.51 -61.67 By element: Atomic # 1 Polarization: 16.53 SS G_CDS: 1.13 Total: 17.65 kcal Atomic # 6 Polarization: -16.89 SS G_CDS: 4.27 Total: -12.62 kcal Atomic # 7 Polarization: -70.96 SS G_CDS: -1.79 Total: -72.75 kcal Atomic # 8 Polarization: -37.41 SS G_CDS: -0.05 Total: -37.46 kcal Atomic # 14 Polarization: 42.82 SS G_CDS: 2.03 Total: 44.84 kcal Atomic # 17 Polarization: -1.25 SS G_CDS: -0.08 Total: -1.33 kcal Total: -67.18 5.51 -61.67 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299545652.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.847 kcal (2) G-P(sol) polarization free energy of solvation -67.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.668 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds