Wall clock time and date at job start Wed Apr 15 2020 11:43:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.37101 * 119.99824 * 2 1 4 4 H 1.07998 * 120.00133 * 203.04667 * 3 2 1 5 5 C 1.38947 * 120.00149 * 23.04960 * 3 2 1 6 6 N 1.31414 * 119.99856 * 11.19954 * 5 3 2 7 7 Si 1.86800 * 120.00168 * 191.20183 * 5 3 2 8 8 H 1.48500 * 109.47219 * 84.95276 * 7 5 3 9 9 H 1.48498 * 109.47304 * 204.95165 * 7 5 3 10 10 H 1.48501 * 109.47352 * 324.95045 * 7 5 3 11 11 C 1.34772 * 120.00188 * 180.02562 * 2 1 3 12 12 O 1.21289 * 120.00140 * 180.02562 * 11 2 1 13 13 C 1.50701 * 119.99854 * 359.97438 * 11 2 1 14 14 H 1.08994 * 115.56250 * 325.70301 * 13 11 2 15 15 C 1.52996 * 117.49712 * 111.39118 * 13 11 2 16 16 C 1.52998 * 60.00212 * 107.49075 * 15 13 11 17 17 H 1.09003 * 117.49573 * 252.49081 * 16 15 13 18 18 C 1.50700 * 117.50214 * 107.48663 * 16 15 13 19 19 C 1.38266 * 119.99072 * 351.12105 * 18 16 15 20 20 C 1.38214 * 120.02202 * 179.76486 * 19 18 16 21 21 C 1.38245 * 120.01560 * 0.50907 * 20 19 18 22 22 C 1.38327 * 119.98343 * 359.74254 * 21 20 19 23 23 Cl 1.73599 * 120.01056 * 180.02562 * 22 21 20 24 24 C 1.38190 * 119.99298 * 171.39278 * 18 16 15 25 25 H 1.09002 * 109.47430 * 271.86830 * 1 2 3 26 26 H 1.09000 * 109.47340 * 31.86378 * 1 2 3 27 27 H 1.08997 * 109.47273 * 151.86456 * 1 2 3 28 28 H 0.97003 * 120.00003 * 180.02562 * 6 5 3 29 29 H 1.09000 * 117.50085 * 0.02562 * 15 13 11 30 30 H 1.09005 * 117.50148 * 214.97423 * 15 13 11 31 31 H 1.07994 * 119.98622 * 359.97438 * 19 18 16 32 32 H 1.08000 * 119.99354 * 180.25509 * 20 19 18 33 33 H 1.07994 * 120.00337 * 179.76824 * 21 20 19 34 34 H 1.08002 * 120.00968 * 359.96111 * 24 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1504 1.1873 0.0000 4 1 3.1658 1.2247 -0.3661 5 6 1.5389 2.3426 0.4711 6 7 0.3964 2.2652 1.1159 7 14 2.3406 4.0059 0.1880 8 1 1.9571 4.5187 -1.1519 9 1 1.8853 4.9590 1.2317 10 1 3.8170 3.8623 0.2591 11 6 2.1389 -1.1671 -0.0005 12 8 3.3517 -1.1671 -0.0001 13 6 1.3854 -2.4722 -0.0005 14 1 0.4470 -2.4735 0.5539 15 6 1.4604 -3.3312 -1.2644 16 6 2.2075 -3.7626 -0.0008 17 1 3.2934 -3.6679 -0.0012 18 6 1.6578 -4.9381 0.7655 19 6 0.4253 -5.4669 0.4294 20 6 -0.0773 -6.5480 1.1286 21 6 0.6473 -7.0946 2.1714 22 6 1.8781 -6.5625 2.5114 23 17 2.7889 -7.2487 3.8203 24 6 2.3831 -5.4835 1.8076 25 1 -0.3634 0.0335 1.0271 26 1 -0.3634 0.8728 -0.5425 27 1 -0.3633 -0.9062 -0.4846 28 1 -0.0307 3.0717 1.4445 29 1 2.0550 -2.9526 -2.0957 30 1 0.5713 -3.8977 -1.5414 31 1 -0.1433 -5.0372 -0.3820 32 1 -1.0382 -6.9633 0.8630 33 1 0.2527 -7.9369 2.7200 34 1 3.3441 -5.0680 2.0725 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334384793.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:21 Heat of formation + Delta-G solvation = 14.231301 kcal Electronic energy + Delta-G solvation = -18658.274852 eV Core-core repulsion = 15583.005122 eV Total energy + Delta-G solvation = -3075.269729 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 279.077 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.89438 -38.55713 -36.71705 -35.84969 -34.48699 -31.60652 -31.05191 -30.37264 -26.50727 -25.06914 -23.87498 -22.98841 -22.39311 -20.40465 -18.54741 -17.42146 -16.86891 -16.21695 -15.42935 -15.36326 -14.85385 -14.40738 -14.08088 -13.82778 -13.58903 -13.57475 -13.06695 -12.25765 -11.88040 -11.75254 -11.65549 -11.57294 -11.35717 -11.31474 -11.16919 -10.89316 -10.81051 -10.49389 -10.37241 -10.24539 -10.00682 -9.02995 -8.88261 -8.63285 -8.37316 -7.68597 -6.31824 -3.88961 1.07647 1.18973 2.04559 3.14888 3.24631 3.29422 3.40142 3.72221 4.10810 4.40209 4.51610 4.75476 4.87336 4.98582 5.05917 5.16323 5.23787 5.26799 5.41563 5.48362 5.74393 5.82510 5.85234 5.99408 6.14820 6.25458 6.29082 6.32867 6.39062 6.62740 6.73746 6.88354 7.22800 7.55769 8.12829 8.48137 9.17928 9.42183 9.98548 10.71802 Molecular weight = 279.08amu Principal moments of inertia in cm(-1) A = 0.027738 B = 0.003652 C = 0.003514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1009.188630 B = 7666.030627 C = 7965.182115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.113 3.887 2 N -0.441 5.441 3 C -0.307 4.307 4 H 0.099 0.901 5 C 0.031 3.969 6 N -0.883 5.883 7 Si 0.927 3.073 8 H -0.277 1.277 9 H -0.284 1.284 10 H -0.269 1.269 11 C 0.471 3.529 12 O -0.590 6.590 13 C -0.147 4.147 14 H 0.114 0.886 15 C -0.152 4.152 16 C -0.100 4.100 17 H 0.126 0.874 18 C -0.025 4.025 19 C -0.118 4.118 20 C -0.105 4.105 21 C -0.122 4.122 22 C -0.031 4.031 23 Cl -0.076 7.076 24 C -0.103 4.103 25 H 0.056 0.944 26 H 0.068 0.932 27 H 0.028 0.972 28 H 0.268 0.732 29 H 0.102 0.898 30 H 0.099 0.901 31 H 0.131 0.869 32 H 0.131 0.869 33 H 0.130 0.870 34 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.949 -16.232 -0.244 16.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.030 4.030 2 N -0.158 5.158 3 C -0.435 4.435 4 H 0.116 0.884 5 C -0.172 4.172 6 N -0.522 5.522 7 Si 0.754 3.246 8 H -0.203 1.203 9 H -0.209 1.209 10 H -0.194 1.194 11 C 0.259 3.741 12 O -0.475 6.475 13 C -0.168 4.168 14 H 0.132 0.868 15 C -0.190 4.190 16 C -0.119 4.119 17 H 0.144 0.856 18 C -0.026 4.026 19 C -0.136 4.136 20 C -0.123 4.123 21 C -0.141 4.141 22 C -0.057 4.057 23 Cl -0.048 7.048 24 C -0.121 4.121 25 H 0.075 0.925 26 H 0.087 0.913 27 H 0.047 0.953 28 H 0.078 0.922 29 H 0.120 0.880 30 H 0.117 0.883 31 H 0.149 0.851 32 H 0.148 0.852 33 H 0.148 0.852 34 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -3.427 -16.102 -0.026 16.463 hybrid contribution 0.127 0.870 0.217 0.906 sum -3.300 -15.232 0.191 15.586 Atomic orbital electron populations 1.21497 0.81091 0.98844 1.01616 1.43482 1.05579 1.04534 1.62214 1.19670 0.99859 0.83901 1.40031 0.88368 1.25352 0.96517 1.00101 0.95276 1.70000 1.17528 1.29408 1.35267 0.85922 0.79652 0.81091 0.77924 1.20291 1.20923 1.19389 1.19094 0.87352 0.83776 0.83872 1.90505 1.13828 1.86901 1.56295 1.22385 1.00943 0.91045 1.02443 0.86784 1.23054 1.02258 1.02086 0.91554 1.21024 0.99680 0.91723 0.99462 0.85578 1.19198 0.93815 0.95017 0.94526 1.21221 0.95592 0.96470 1.00316 1.21058 0.99751 0.96265 0.95254 1.20994 0.93442 1.01029 0.98636 1.20878 0.94285 0.97476 0.93089 1.98363 1.74306 1.84243 1.47848 1.20934 1.01153 0.94939 0.95111 0.92498 0.91323 0.95339 0.92229 0.87977 0.88296 0.85100 0.85152 0.85239 0.84673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.53 8.30 59.84 0.50 3.03 16 2 N -0.44 -11.37 3.02 -122.20 -0.37 -11.74 16 3 C -0.31 -8.61 9.28 -14.93 -0.14 -8.75 16 4 H 0.10 2.88 7.42 -52.49 -0.39 2.49 16 5 C 0.03 0.81 5.12 -17.47 -0.09 0.72 16 6 N -0.88 -23.59 10.64 55.50 0.59 -23.00 16 7 Si 0.93 20.80 29.57 -169.99 -5.03 15.78 16 8 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 9 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 10 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 11 C 0.47 11.52 7.41 -10.99 -0.08 11.44 16 12 O -0.59 -16.39 15.96 5.55 0.09 -16.30 16 13 C -0.15 -2.68 4.42 -91.77 -0.41 -3.09 16 14 H 0.11 1.96 7.23 -51.93 -0.38 1.58 16 15 C -0.15 -2.23 9.56 -26.73 -0.26 -2.49 16 16 C -0.10 -1.60 5.55 -91.77 -0.51 -2.11 16 17 H 0.13 2.21 7.67 -51.93 -0.40 1.82 16 18 C -0.03 -0.35 5.61 -104.63 -0.59 -0.93 16 19 C -0.12 -1.37 9.29 -39.58 -0.37 -1.73 16 20 C -0.11 -1.06 10.05 -39.59 -0.40 -1.46 16 21 C -0.12 -1.30 9.83 -39.55 -0.39 -1.69 16 22 C -0.03 -0.38 6.32 -39.50 -0.25 -0.63 16 23 Cl -0.08 -0.88 28.96 -51.86 -1.50 -2.39 16 24 C -0.10 -1.40 9.52 -39.55 -0.38 -1.77 16 25 H 0.06 1.32 7.54 -51.93 -0.39 0.93 16 26 H 0.07 1.61 7.07 -51.93 -0.37 1.24 16 27 H 0.03 0.52 6.53 -51.93 -0.34 0.18 16 28 H 0.27 6.77 8.31 -40.82 -0.34 6.43 16 29 H 0.10 1.57 8.14 -51.93 -0.42 1.14 16 30 H 0.10 1.14 6.18 -51.93 -0.32 0.82 16 31 H 0.13 1.30 6.03 -52.49 -0.32 0.99 16 32 H 0.13 0.95 8.06 -52.49 -0.42 0.53 16 33 H 0.13 1.11 8.06 -52.49 -0.42 0.69 16 34 H 0.14 1.83 8.06 -52.49 -0.42 1.40 16 LS Contribution 306.01 15.07 4.61 4.61 Total: -1.00 -30.79 306.01 -8.68 -39.47 By element: Atomic # 1 Polarization: 6.75 SS G_CDS: -3.72 Total: 3.02 kcal Atomic # 6 Polarization: -6.11 SS G_CDS: -3.35 Total: -9.46 kcal Atomic # 7 Polarization: -34.95 SS G_CDS: 0.22 Total: -34.73 kcal Atomic # 8 Polarization: -16.39 SS G_CDS: 0.09 Total: -16.30 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.03 Total: 15.78 kcal Atomic # 17 Polarization: -0.88 SS G_CDS: -1.50 Total: -2.39 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -30.79 -8.68 -39.47 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334384793.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.698 kcal (2) G-P(sol) polarization free energy of solvation -30.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.467 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds