Wall clock time and date at job start Wed Apr 15 2020 11:43:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.37101 * 119.99824 * 2 1 4 4 H 1.07998 * 120.00133 * 203.04667 * 3 2 1 5 5 C 1.38947 * 120.00149 * 23.04960 * 3 2 1 6 6 N 1.31414 * 119.99856 * 11.19954 * 5 3 2 7 7 Si 1.86800 * 120.00168 * 191.20183 * 5 3 2 8 8 H 1.48500 * 109.47219 * 84.95276 * 7 5 3 9 9 H 1.48498 * 109.47304 * 204.95165 * 7 5 3 10 10 H 1.48501 * 109.47352 * 324.95045 * 7 5 3 11 11 C 1.34772 * 120.00188 * 180.02562 * 2 1 3 12 12 O 1.21289 * 120.00140 * 180.02562 * 11 2 1 13 13 C 1.50701 * 119.99854 * 359.97438 * 11 2 1 14 14 H 1.08994 * 115.56250 * 325.70301 * 13 11 2 15 15 C 1.52996 * 117.49712 * 111.39118 * 13 11 2 16 16 C 1.52998 * 60.00212 * 107.49075 * 15 13 11 17 17 H 1.09003 * 117.49573 * 252.49081 * 16 15 13 18 18 C 1.50700 * 117.50214 * 107.48663 * 16 15 13 19 19 C 1.38266 * 119.99072 * 351.12105 * 18 16 15 20 20 C 1.38214 * 120.02202 * 179.76486 * 19 18 16 21 21 C 1.38245 * 120.01560 * 0.50907 * 20 19 18 22 22 C 1.38327 * 119.98343 * 359.74254 * 21 20 19 23 23 Cl 1.73599 * 120.01056 * 180.02562 * 22 21 20 24 24 C 1.38190 * 119.99298 * 171.39278 * 18 16 15 25 25 H 1.09002 * 109.47430 * 271.86830 * 1 2 3 26 26 H 1.09000 * 109.47340 * 31.86378 * 1 2 3 27 27 H 1.08997 * 109.47273 * 151.86456 * 1 2 3 28 28 H 0.97003 * 120.00003 * 180.02562 * 6 5 3 29 29 H 1.09000 * 117.50085 * 0.02562 * 15 13 11 30 30 H 1.09005 * 117.50148 * 214.97423 * 15 13 11 31 31 H 1.07994 * 119.98622 * 359.97438 * 19 18 16 32 32 H 1.08000 * 119.99354 * 180.25509 * 20 19 18 33 33 H 1.07994 * 120.00337 * 179.76824 * 21 20 19 34 34 H 1.08002 * 120.00968 * 359.96111 * 24 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1504 1.1873 0.0000 4 1 3.1658 1.2247 -0.3661 5 6 1.5389 2.3426 0.4711 6 7 0.3964 2.2652 1.1159 7 14 2.3406 4.0059 0.1880 8 1 1.9571 4.5187 -1.1519 9 1 1.8853 4.9590 1.2317 10 1 3.8170 3.8623 0.2591 11 6 2.1389 -1.1671 -0.0005 12 8 3.3517 -1.1671 -0.0001 13 6 1.3854 -2.4722 -0.0005 14 1 0.4470 -2.4735 0.5539 15 6 1.4604 -3.3312 -1.2644 16 6 2.2075 -3.7626 -0.0008 17 1 3.2934 -3.6679 -0.0012 18 6 1.6578 -4.9381 0.7655 19 6 0.4253 -5.4669 0.4294 20 6 -0.0773 -6.5480 1.1286 21 6 0.6473 -7.0946 2.1714 22 6 1.8781 -6.5625 2.5114 23 17 2.7889 -7.2487 3.8203 24 6 2.3831 -5.4835 1.8076 25 1 -0.3634 0.0335 1.0271 26 1 -0.3634 0.8728 -0.5425 27 1 -0.3633 -0.9062 -0.4846 28 1 -0.0307 3.0717 1.4445 29 1 2.0550 -2.9526 -2.0957 30 1 0.5713 -3.8977 -1.5414 31 1 -0.1433 -5.0372 -0.3820 32 1 -1.0382 -6.9633 0.8630 33 1 0.2527 -7.9369 2.7200 34 1 3.3441 -5.0680 2.0725 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000334384793.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:21 Heat of formation + Delta-G solvation = -2.469138 kcal Electronic energy + Delta-G solvation = -18658.999037 eV Core-core repulsion = 15583.005122 eV Total energy + Delta-G solvation = -3075.993914 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 279.077 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.13489 -40.04819 -37.85296 -37.11043 -36.39646 -33.62385 -31.98291 -31.34007 -28.42725 -26.87663 -24.99949 -24.42891 -23.46038 -21.51917 -20.24009 -18.95675 -18.50786 -17.67539 -16.91356 -16.35500 -16.27205 -15.98936 -15.79241 -15.25072 -14.83878 -14.52866 -14.46410 -13.87555 -13.42180 -13.25214 -13.08424 -12.95162 -12.75211 -12.64147 -12.47704 -12.39013 -12.31789 -12.15721 -11.78536 -11.50510 -11.38074 -11.02533 -10.40120 -9.80198 -9.70878 -9.53266 -8.34611 -6.01181 0.17256 0.28193 1.14228 1.35903 1.39594 1.51591 1.87047 2.25839 2.54733 2.95752 3.01370 3.20263 3.59819 3.84635 3.89441 3.99600 4.08492 4.14695 4.30999 4.34981 4.50952 4.65980 4.73920 4.83682 4.94658 5.02711 5.04827 5.13925 5.27923 5.38621 5.40805 5.42494 5.59856 5.87159 6.07713 6.47093 7.14642 7.45849 8.02195 8.67019 Molecular weight = 279.08amu Principal moments of inertia in cm(-1) A = 0.027738 B = 0.003652 C = 0.003514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1009.188630 B = 7666.030627 C = 7965.182115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.124 3.876 2 N -0.458 5.458 3 C -0.348 4.348 4 H 0.070 0.930 5 C -0.001 4.001 6 N -0.896 5.896 7 Si 0.990 3.010 8 H -0.263 1.263 9 H -0.272 1.272 10 H -0.278 1.278 11 C 0.460 3.540 12 O -0.638 6.638 13 C -0.166 4.166 14 H 0.132 0.868 15 C -0.121 4.121 16 C -0.094 4.094 17 H 0.096 0.904 18 C -0.042 4.042 19 C -0.115 4.115 20 C -0.095 4.095 21 C -0.118 4.118 22 C -0.043 4.043 23 Cl -0.077 7.077 24 C -0.124 4.124 25 H 0.043 0.957 26 H 0.052 0.948 27 H 0.072 0.928 28 H 0.274 0.726 29 H 0.092 0.908 30 H 0.146 0.854 31 H 0.154 0.846 32 H 0.169 0.831 33 H 0.154 0.846 34 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.475 -17.709 -0.788 18.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.019 4.019 2 N -0.176 5.176 3 C -0.476 4.476 4 H 0.088 0.912 5 C -0.203 4.203 6 N -0.535 5.535 7 Si 0.814 3.186 8 H -0.188 1.188 9 H -0.196 1.196 10 H -0.203 1.203 11 C 0.250 3.750 12 O -0.527 6.527 13 C -0.187 4.187 14 H 0.150 0.850 15 C -0.158 4.158 16 C -0.113 4.113 17 H 0.115 0.885 18 C -0.043 4.043 19 C -0.132 4.132 20 C -0.113 4.113 21 C -0.136 4.136 22 C -0.069 4.069 23 Cl -0.048 7.048 24 C -0.142 4.142 25 H 0.062 0.938 26 H 0.071 0.929 27 H 0.091 0.909 28 H 0.084 0.916 29 H 0.110 0.890 30 H 0.163 0.837 31 H 0.172 0.828 32 H 0.186 0.814 33 H 0.171 0.829 34 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -5.988 -17.589 -0.569 18.589 hybrid contribution 0.931 1.249 0.430 1.616 sum -5.057 -16.340 -0.139 17.105 Atomic orbital electron populations 1.21439 0.79140 1.00295 1.01003 1.43766 1.06916 1.04442 1.62457 1.19633 0.99614 0.86019 1.42351 0.91223 1.26098 0.96994 1.02873 0.94344 1.70072 1.18014 1.30566 1.34812 0.84999 0.78112 0.76875 0.78654 1.18808 1.19632 1.20278 1.20152 0.87277 0.85546 0.82011 1.90458 1.16216 1.87992 1.57985 1.22179 1.01487 0.88614 1.06393 0.85046 1.23229 1.03190 0.99540 0.89824 1.20897 0.98185 0.91373 1.00811 0.88545 1.19064 0.95287 0.94897 0.95005 1.21485 0.94402 0.96574 1.00788 1.21487 1.00763 0.95114 0.93962 1.21377 0.92411 1.01192 0.98629 1.21002 0.95177 0.97466 0.93258 1.98360 1.74550 1.84100 1.47807 1.20933 1.01101 0.96092 0.96115 0.93829 0.92873 0.90948 0.91636 0.88954 0.83670 0.82814 0.81372 0.82851 0.86273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 5.51 8.30 127.77 1.06 6.57 16 2 N -0.46 -24.29 3.02 -658.91 -1.99 -26.28 16 3 C -0.35 -20.32 9.28 84.04 0.78 -19.54 16 4 H 0.07 4.35 7.42 -2.91 -0.02 4.33 16 5 C 0.00 -0.07 5.12 84.93 0.43 0.37 16 6 N -0.90 -48.03 10.64 21.66 0.23 -47.80 16 7 Si 0.99 43.03 29.57 68.60 2.03 45.06 16 8 H -0.26 -10.82 7.11 99.48 0.71 -10.11 16 9 H -0.27 -11.20 7.11 99.48 0.71 -10.50 16 10 H -0.28 -12.35 7.11 99.48 0.71 -11.65 16 11 C 0.46 23.23 7.41 87.66 0.65 23.88 16 12 O -0.64 -37.50 15.96 -3.06 -0.05 -37.55 16 13 C -0.17 -5.94 4.42 -11.54 -0.05 -6.00 16 14 H 0.13 4.23 7.23 -2.39 -0.02 4.21 16 15 C -0.12 -3.27 9.56 30.59 0.29 -2.98 16 16 C -0.09 -2.97 5.55 -11.54 -0.06 -3.03 16 17 H 0.10 3.60 7.67 -2.39 -0.02 3.58 16 18 C -0.04 -1.10 5.61 -19.87 -0.11 -1.21 16 19 C -0.11 -2.20 9.29 22.27 0.21 -2.00 16 20 C -0.10 -1.48 10.05 22.27 0.22 -1.26 16 21 C -0.12 -2.11 9.83 22.29 0.22 -1.89 16 22 C -0.04 -0.99 6.32 22.32 0.14 -0.85 16 23 Cl -0.08 -1.73 28.96 -2.72 -0.08 -1.81 16 24 C -0.12 -3.35 9.52 22.29 0.21 -3.14 16 25 H 0.04 2.02 7.54 -2.39 -0.02 2.00 16 26 H 0.05 2.48 7.07 -2.39 -0.02 2.46 16 27 H 0.07 2.51 6.53 -2.39 -0.02 2.50 16 28 H 0.27 13.71 8.31 -92.71 -0.77 12.94 16 29 H 0.09 2.72 8.14 -2.39 -0.02 2.70 16 30 H 0.15 2.59 6.18 -2.38 -0.01 2.57 16 31 H 0.15 2.19 6.03 -2.91 -0.02 2.17 16 32 H 0.17 1.38 8.06 -2.91 -0.02 1.36 16 33 H 0.15 1.99 8.06 -2.91 -0.02 1.97 16 34 H 0.12 3.46 8.06 -2.91 -0.02 3.44 16 Total: -1.00 -70.73 306.01 5.26 -65.47 By element: Atomic # 1 Polarization: 12.86 SS G_CDS: 1.12 Total: 13.98 kcal Atomic # 6 Polarization: -15.07 SS G_CDS: 3.99 Total: -11.08 kcal Atomic # 7 Polarization: -72.32 SS G_CDS: -1.76 Total: -74.08 kcal Atomic # 8 Polarization: -37.50 SS G_CDS: -0.05 Total: -37.55 kcal Atomic # 14 Polarization: 43.03 SS G_CDS: 2.03 Total: 45.06 kcal Atomic # 17 Polarization: -1.73 SS G_CDS: -0.08 Total: -1.81 kcal Total: -70.73 5.26 -65.47 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334384793.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.002 kcal (2) G-P(sol) polarization free energy of solvation -70.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.471 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds