Wall clock time and date at job start Wed Apr 15 2020 11:43:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.37091 * 119.99933 * 2 1 4 4 H 1.08004 * 119.99529 * 205.14883 * 3 2 1 5 5 C 1.38945 * 120.00384 * 25.14724 * 3 2 1 6 6 N 1.31418 * 120.00076 * 11.74514 * 5 3 2 7 7 Si 1.86800 * 120.00282 * 191.74967 * 5 3 2 8 8 H 1.48505 * 109.47379 * 90.00108 * 7 5 3 9 9 H 1.48500 * 109.47269 * 210.00040 * 7 5 3 10 10 H 1.48503 * 109.47119 * 329.99707 * 7 5 3 11 11 C 1.34779 * 119.99616 * 179.97438 * 2 1 3 12 12 O 1.21295 * 119.99376 * 179.97438 * 11 2 1 13 13 C 1.50697 * 120.00230 * 359.97438 * 11 2 1 14 14 H 1.08998 * 115.55955 * 34.31901 * 13 11 2 15 15 C 1.52999 * 117.49956 * 248.61985 * 13 11 2 16 16 C 1.53004 * 60.00174 * 252.51324 * 15 13 11 17 17 H 1.08996 * 117.49647 * 107.51598 * 16 15 13 18 18 C 1.50697 * 117.49998 * 252.51273 * 16 15 13 19 19 C 1.38259 * 119.99401 * 188.61233 * 18 16 15 20 20 C 1.38226 * 120.02464 * 180.02562 * 19 18 16 21 21 C 1.38231 * 120.01332 * 359.97438 * 20 19 18 22 22 C 1.38326 * 119.98790 * 0.02562 * 21 20 19 23 23 Cl 1.73598 * 120.01250 * 179.97438 * 22 21 20 24 24 C 1.38203 * 119.99146 * 8.62590 * 18 16 15 25 25 H 1.08997 * 109.47074 * 265.05471 * 1 2 3 26 26 H 1.08999 * 109.47172 * 25.06048 * 1 2 3 27 27 H 1.09005 * 109.46948 * 145.05894 * 1 2 3 28 28 H 0.96998 * 120.00238 * 179.97438 * 6 5 3 29 29 H 1.09002 * 117.49829 * 145.02203 * 15 13 11 30 30 H 1.08996 * 117.51789 * 359.97438 * 15 13 11 31 31 H 1.07996 * 119.98973 * 359.71916 * 19 18 16 32 32 H 1.07997 * 119.98804 * 179.97438 * 20 19 18 33 33 H 1.08007 * 120.00548 * 179.97438 * 21 20 19 34 34 H 1.07993 * 120.00479 * 359.97438 * 24 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1872 0.0000 4 1 3.1537 1.2315 -0.3975 5 6 1.5546 2.3336 0.5113 6 7 0.4388 2.2430 1.1996 7 14 2.3394 4.0035 0.2203 8 1 1.8077 4.5881 -1.0371 9 1 2.0226 4.9043 1.3576 10 1 3.8119 3.8459 0.1091 11 6 2.1389 -1.1673 0.0005 12 8 3.3518 -1.1672 0.0001 13 6 1.3853 -2.4723 0.0017 14 1 0.4467 -2.4739 -0.5523 15 6 1.4610 -3.3307 1.2660 16 6 2.2075 -3.7627 0.0022 17 1 3.2933 -3.6681 0.0019 18 6 1.6574 -4.9385 -0.7632 19 6 2.3825 -5.4849 -1.8059 20 6 1.8782 -6.5631 -2.5087 21 6 0.6488 -7.0960 -2.1690 22 6 -0.0771 -6.5498 -1.1259 23 17 -1.6214 -7.2181 -0.6992 24 6 0.4280 -5.4703 -0.4229 25 1 -0.3633 -0.0886 1.0238 26 1 -0.3633 0.9309 -0.4353 27 1 -0.3633 -0.8425 -0.5886 28 1 0.0229 3.0432 1.5569 29 1 0.5721 -3.8969 1.5438 30 1 2.0561 -2.9519 2.0969 31 1 3.3410 -5.0660 -2.0746 32 1 2.4450 -6.9891 -3.3234 33 1 0.2548 -7.9382 -2.7186 34 1 -0.1382 -5.0435 0.3917 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334384797.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:23 Heat of formation + Delta-G solvation = 14.251670 kcal Electronic energy + Delta-G solvation = -18686.887287 eV Core-core repulsion = 15611.618442 eV Total energy + Delta-G solvation = -3075.268846 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 279.077 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.89503 -38.55014 -36.69845 -35.90462 -34.48887 -31.61345 -30.80545 -30.61503 -26.50774 -25.07409 -23.93790 -22.95243 -22.32734 -20.42733 -18.54369 -17.47185 -16.85586 -16.22341 -15.47526 -15.34683 -14.73807 -14.38653 -14.17320 -13.82805 -13.60913 -13.59613 -13.07908 -12.13870 -11.89284 -11.83220 -11.73124 -11.56822 -11.33649 -11.28491 -11.18463 -10.90617 -10.86223 -10.44487 -10.35281 -10.25269 -9.96773 -9.02342 -8.92802 -8.61298 -8.37230 -7.66151 -6.33385 -3.90381 1.07820 1.16440 2.01786 3.14309 3.24534 3.29942 3.40844 3.72100 4.10657 4.41999 4.51047 4.71068 4.87256 5.01160 5.08720 5.20177 5.25329 5.28768 5.40227 5.53243 5.61902 5.77722 5.90753 5.99073 6.12681 6.20755 6.34428 6.40500 6.43662 6.62686 6.72110 6.86997 7.20618 7.55250 8.14202 8.48046 9.17450 9.41345 9.98612 10.71418 Molecular weight = 279.08amu Principal moments of inertia in cm(-1) A = 0.031013 B = 0.003704 C = 0.003471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 902.621668 B = 7556.572377 C = 8064.930723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.113 3.887 2 N -0.440 5.440 3 C -0.307 4.307 4 H 0.098 0.902 5 C 0.031 3.969 6 N -0.881 5.881 7 Si 0.927 3.073 8 H -0.277 1.277 9 H -0.283 1.283 10 H -0.269 1.269 11 C 0.473 3.527 12 O -0.590 6.590 13 C -0.149 4.149 14 H 0.113 0.887 15 C -0.148 4.148 16 C -0.103 4.103 17 H 0.128 0.872 18 C -0.025 4.025 19 C -0.108 4.108 20 C -0.105 4.105 21 C -0.123 4.123 22 C -0.031 4.031 23 Cl -0.077 7.077 24 C -0.114 4.114 25 H 0.052 0.948 26 H 0.074 0.926 27 H 0.026 0.974 28 H 0.268 0.732 29 H 0.099 0.901 30 H 0.103 0.897 31 H 0.131 0.869 32 H 0.131 0.869 33 H 0.130 0.870 34 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.601 -16.115 -4.350 17.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.031 4.031 2 N -0.157 5.157 3 C -0.435 4.435 4 H 0.116 0.884 5 C -0.172 4.172 6 N -0.520 5.520 7 Si 0.753 3.247 8 H -0.203 1.203 9 H -0.209 1.209 10 H -0.193 1.193 11 C 0.261 3.739 12 O -0.475 6.475 13 C -0.170 4.170 14 H 0.131 0.869 15 C -0.186 4.186 16 C -0.122 4.122 17 H 0.145 0.855 18 C -0.025 4.025 19 C -0.126 4.126 20 C -0.124 4.124 21 C -0.142 4.142 22 C -0.057 4.057 23 Cl -0.048 7.048 24 C -0.133 4.133 25 H 0.070 0.930 26 H 0.093 0.907 27 H 0.044 0.956 28 H 0.078 0.922 29 H 0.117 0.883 30 H 0.121 0.879 31 H 0.149 0.851 32 H 0.149 0.851 33 H 0.147 0.853 34 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -3.302 -15.985 -4.215 16.858 hybrid contribution -0.146 0.857 -0.021 0.870 sum -3.448 -15.128 -4.235 16.083 Atomic orbital electron populations 1.21498 0.81191 0.99904 1.00525 1.43476 1.05510 1.04520 1.62225 1.19665 1.01077 0.84263 1.38504 0.88449 1.25363 0.96613 1.00171 0.95056 1.69992 1.19153 1.29755 1.33121 0.85919 0.79700 0.81232 0.77822 1.20338 1.20910 1.19327 1.19119 0.87349 0.83810 0.83642 1.90503 1.13813 1.86930 1.56249 1.22386 1.00833 0.91019 1.02756 0.86870 1.23027 1.02214 1.01745 0.91578 1.21061 0.99644 0.91741 0.99726 0.85463 1.19227 0.93148 0.95020 0.95134 1.21167 1.00565 0.95908 0.94934 1.21085 0.95185 0.96341 0.99750 1.20993 0.95177 1.00989 0.96998 1.20861 0.88520 0.97594 0.98748 1.98363 1.28592 1.85015 1.92866 1.21009 0.96232 0.95545 1.00479 0.92974 0.90726 0.95589 0.92216 0.88332 0.87858 0.85066 0.85118 0.85253 0.84666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.53 8.45 59.85 0.51 3.04 16 2 N -0.44 -11.37 3.01 -122.19 -0.37 -11.74 16 3 C -0.31 -8.61 9.23 -14.94 -0.14 -8.75 16 4 H 0.10 2.85 7.46 -52.48 -0.39 2.46 16 5 C 0.03 0.83 5.06 -17.47 -0.09 0.74 16 6 N -0.88 -23.54 10.83 55.50 0.60 -22.94 16 7 Si 0.93 20.74 29.57 -169.99 -5.03 15.72 16 8 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 9 H -0.28 -6.26 7.11 56.52 0.40 -5.85 16 10 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 11 C 0.47 11.58 7.41 -10.99 -0.08 11.49 16 12 O -0.59 -16.31 15.98 5.54 0.09 -16.23 16 13 C -0.15 -2.75 4.93 -91.77 -0.45 -3.20 16 14 H 0.11 1.93 6.51 -51.93 -0.34 1.60 16 15 C -0.15 -2.32 9.56 -26.73 -0.26 -2.58 16 16 C -0.10 -1.65 5.55 -91.77 -0.51 -2.15 16 17 H 0.13 2.20 7.67 -51.93 -0.40 1.80 16 18 C -0.02 -0.34 5.61 -104.63 -0.59 -0.93 16 19 C -0.11 -1.30 9.74 -39.58 -0.39 -1.69 16 20 C -0.11 -1.08 10.05 -39.59 -0.40 -1.48 16 21 C -0.12 -1.28 9.83 -39.55 -0.39 -1.67 16 22 C -0.03 -0.36 6.32 -39.50 -0.25 -0.61 16 23 Cl -0.08 -0.84 28.96 -51.86 -1.50 -2.34 16 24 C -0.11 -1.45 9.08 -39.55 -0.36 -1.81 16 25 H 0.05 1.20 7.85 -51.93 -0.41 0.79 16 26 H 0.07 1.77 6.78 -51.93 -0.35 1.42 16 27 H 0.03 0.49 6.22 -51.93 -0.32 0.16 16 28 H 0.27 6.76 8.31 -40.82 -0.34 6.42 16 29 H 0.10 1.27 6.18 -51.93 -0.32 0.95 16 30 H 0.10 1.73 8.14 -51.93 -0.42 1.30 16 31 H 0.13 1.47 8.06 -52.49 -0.42 1.05 16 32 H 0.13 0.99 8.06 -52.49 -0.42 0.56 16 33 H 0.13 1.08 8.06 -52.48 -0.42 0.66 16 34 H 0.14 1.62 6.02 -52.49 -0.32 1.30 16 LS Contribution 305.80 15.07 4.61 4.61 Total: -1.00 -30.54 305.80 -8.66 -39.20 By element: Atomic # 1 Polarization: 6.99 SS G_CDS: -3.67 Total: 3.32 kcal Atomic # 6 Polarization: -6.21 SS G_CDS: -3.39 Total: -9.60 kcal Atomic # 7 Polarization: -34.91 SS G_CDS: 0.23 Total: -34.67 kcal Atomic # 8 Polarization: -16.31 SS G_CDS: 0.09 Total: -16.23 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.03 Total: 15.72 kcal Atomic # 17 Polarization: -0.84 SS G_CDS: -1.50 Total: -2.34 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -30.54 -8.66 -39.20 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334384797.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.450 kcal (2) G-P(sol) polarization free energy of solvation -30.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.199 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds