Wall clock time and date at job start Wed Apr 15 2020 11:43:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.37091 * 119.99933 * 2 1 4 4 H 1.08004 * 119.99529 * 205.14883 * 3 2 1 5 5 C 1.38945 * 120.00384 * 25.14724 * 3 2 1 6 6 N 1.31418 * 120.00076 * 11.74514 * 5 3 2 7 7 Si 1.86800 * 120.00282 * 191.74967 * 5 3 2 8 8 H 1.48505 * 109.47379 * 90.00108 * 7 5 3 9 9 H 1.48500 * 109.47269 * 210.00040 * 7 5 3 10 10 H 1.48503 * 109.47119 * 329.99707 * 7 5 3 11 11 C 1.34779 * 119.99616 * 179.97438 * 2 1 3 12 12 O 1.21295 * 119.99376 * 179.97438 * 11 2 1 13 13 C 1.50697 * 120.00230 * 359.97438 * 11 2 1 14 14 H 1.08998 * 115.55955 * 34.31901 * 13 11 2 15 15 C 1.52999 * 117.49956 * 248.61985 * 13 11 2 16 16 C 1.53004 * 60.00174 * 252.51324 * 15 13 11 17 17 H 1.08996 * 117.49647 * 107.51598 * 16 15 13 18 18 C 1.50697 * 117.49998 * 252.51273 * 16 15 13 19 19 C 1.38259 * 119.99401 * 188.61233 * 18 16 15 20 20 C 1.38226 * 120.02464 * 180.02562 * 19 18 16 21 21 C 1.38231 * 120.01332 * 359.97438 * 20 19 18 22 22 C 1.38326 * 119.98790 * 0.02562 * 21 20 19 23 23 Cl 1.73598 * 120.01250 * 179.97438 * 22 21 20 24 24 C 1.38203 * 119.99146 * 8.62590 * 18 16 15 25 25 H 1.08997 * 109.47074 * 265.05471 * 1 2 3 26 26 H 1.08999 * 109.47172 * 25.06048 * 1 2 3 27 27 H 1.09005 * 109.46948 * 145.05894 * 1 2 3 28 28 H 0.96998 * 120.00238 * 179.97438 * 6 5 3 29 29 H 1.09002 * 117.49829 * 145.02203 * 15 13 11 30 30 H 1.08996 * 117.51789 * 359.97438 * 15 13 11 31 31 H 1.07996 * 119.98973 * 359.71916 * 19 18 16 32 32 H 1.07997 * 119.98804 * 179.97438 * 20 19 18 33 33 H 1.08007 * 120.00548 * 179.97438 * 21 20 19 34 34 H 1.07993 * 120.00479 * 359.97438 * 24 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1872 0.0000 4 1 3.1537 1.2315 -0.3975 5 6 1.5546 2.3336 0.5113 6 7 0.4388 2.2430 1.1996 7 14 2.3394 4.0035 0.2203 8 1 1.8077 4.5881 -1.0371 9 1 2.0226 4.9043 1.3576 10 1 3.8119 3.8459 0.1091 11 6 2.1389 -1.1673 0.0005 12 8 3.3518 -1.1672 0.0001 13 6 1.3853 -2.4723 0.0017 14 1 0.4467 -2.4739 -0.5523 15 6 1.4610 -3.3307 1.2660 16 6 2.2075 -3.7627 0.0022 17 1 3.2933 -3.6681 0.0019 18 6 1.6574 -4.9385 -0.7632 19 6 2.3825 -5.4849 -1.8059 20 6 1.8782 -6.5631 -2.5087 21 6 0.6488 -7.0960 -2.1690 22 6 -0.0771 -6.5498 -1.1259 23 17 -1.6214 -7.2181 -0.6992 24 6 0.4280 -5.4703 -0.4229 25 1 -0.3633 -0.0886 1.0238 26 1 -0.3633 0.9309 -0.4353 27 1 -0.3633 -0.8425 -0.5886 28 1 0.0229 3.0432 1.5569 29 1 0.5721 -3.8969 1.5438 30 1 2.0561 -2.9519 2.0969 31 1 3.3410 -5.0660 -2.0746 32 1 2.4450 -6.9891 -3.3234 33 1 0.2548 -7.9382 -2.7186 34 1 -0.1382 -5.0435 0.3917 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000334384797.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:23 Heat of formation + Delta-G solvation = -1.875639 kcal Electronic energy + Delta-G solvation = -18687.586620 eV Core-core repulsion = 15611.618442 eV Total energy + Delta-G solvation = -3075.968178 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 279.077 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.14241 -40.05078 -37.79830 -37.14947 -36.41142 -33.63636 -31.68624 -31.62505 -28.43754 -26.89626 -25.04770 -24.48376 -23.36645 -21.55391 -20.25607 -18.93820 -18.59496 -17.67862 -16.87640 -16.31437 -16.27968 -16.00674 -15.87996 -15.09730 -14.87621 -14.64054 -14.45969 -13.75517 -13.58598 -13.22331 -13.12542 -12.94931 -12.73442 -12.63915 -12.61019 -12.37746 -12.18189 -12.14686 -11.82977 -11.53557 -11.34997 -11.00739 -10.41097 -9.80990 -9.68896 -9.52853 -8.36058 -6.02421 0.16820 0.27730 1.15763 1.35907 1.40123 1.52532 1.87091 2.25175 2.53401 2.95001 3.00700 3.19168 3.59158 3.82211 3.85852 3.97085 4.08104 4.19671 4.23920 4.35543 4.47704 4.62831 4.68861 4.78701 4.92620 4.98380 5.07718 5.11764 5.28403 5.34724 5.40828 5.42285 5.59930 5.84249 6.08845 6.46653 7.13998 7.44285 8.01507 8.67146 Molecular weight = 279.08amu Principal moments of inertia in cm(-1) A = 0.031013 B = 0.003704 C = 0.003471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 902.621668 B = 7556.572377 C = 8064.930723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.123 3.877 2 N -0.458 5.458 3 C -0.348 4.348 4 H 0.070 0.930 5 C -0.001 4.001 6 N -0.895 5.895 7 Si 0.990 3.010 8 H -0.264 1.264 9 H -0.272 1.272 10 H -0.276 1.276 11 C 0.463 3.537 12 O -0.634 6.634 13 C -0.164 4.164 14 H 0.132 0.868 15 C -0.132 4.132 16 C -0.086 4.086 17 H 0.106 0.894 18 C -0.043 4.043 19 C -0.118 4.118 20 C -0.099 4.099 21 C -0.116 4.116 22 C -0.040 4.040 23 Cl -0.071 7.071 24 C -0.118 4.118 25 H 0.044 0.956 26 H 0.057 0.943 27 H 0.064 0.936 28 H 0.274 0.726 29 H 0.134 0.866 30 H 0.088 0.912 31 H 0.133 0.867 32 H 0.161 0.839 33 H 0.154 0.846 34 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.836 -17.541 -5.066 18.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.020 4.020 2 N -0.175 5.175 3 C -0.476 4.476 4 H 0.088 0.912 5 C -0.203 4.203 6 N -0.534 5.534 7 Si 0.814 3.186 8 H -0.189 1.189 9 H -0.197 1.197 10 H -0.201 1.201 11 C 0.253 3.747 12 O -0.522 6.522 13 C -0.185 4.185 14 H 0.150 0.850 15 C -0.170 4.170 16 C -0.105 4.105 17 H 0.125 0.875 18 C -0.043 4.043 19 C -0.136 4.136 20 C -0.117 4.117 21 C -0.135 4.135 22 C -0.067 4.067 23 Cl -0.042 7.042 24 C -0.137 4.137 25 H 0.062 0.938 26 H 0.076 0.924 27 H 0.082 0.918 28 H 0.084 0.916 29 H 0.151 0.849 30 H 0.106 0.894 31 H 0.151 0.849 32 H 0.179 0.821 33 H 0.172 0.828 34 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -4.575 -17.422 -4.927 18.674 hybrid contribution 0.243 1.207 0.191 1.246 sum -4.332 -16.215 -4.736 17.439 Atomic orbital electron populations 1.21432 0.79392 1.00606 1.00534 1.43750 1.06763 1.04495 1.62492 1.19631 1.00917 0.86312 1.40739 0.91193 1.26113 0.97012 1.03000 0.94129 1.70058 1.19629 1.30955 1.32729 0.84983 0.78288 0.76899 0.78469 1.18889 1.19700 1.20091 1.20089 0.87276 0.85434 0.81901 1.90455 1.15998 1.87947 1.57843 1.22190 1.01548 0.88915 1.05857 0.85046 1.23139 1.03178 1.00244 0.90397 1.20938 0.98418 0.91219 0.99880 0.87546 1.19048 0.94186 0.94918 0.96141 1.21346 1.00747 0.96619 0.94851 1.21401 0.95189 0.95241 0.99837 1.21350 0.94827 1.01079 0.96236 1.20985 0.89008 0.97559 0.99115 1.98367 1.28132 1.84818 1.92877 1.21033 0.95838 0.95946 1.00839 0.93762 0.92393 0.91798 0.91603 0.84862 0.89351 0.84920 0.82095 0.82831 0.84196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 5.56 8.45 127.77 1.08 6.64 16 2 N -0.46 -24.32 3.01 -658.88 -1.98 -26.30 16 3 C -0.35 -20.25 9.23 84.04 0.78 -19.47 16 4 H 0.07 4.34 7.46 -2.91 -0.02 4.32 16 5 C 0.00 -0.03 5.06 84.92 0.43 0.40 16 6 N -0.90 -47.97 10.83 21.66 0.23 -47.74 16 7 Si 0.99 42.83 29.57 68.60 2.03 44.86 16 8 H -0.26 -10.81 7.11 99.48 0.71 -10.10 16 9 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 10 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 11 C 0.46 23.39 7.41 87.66 0.65 24.04 16 12 O -0.63 -36.85 15.98 -3.08 -0.05 -36.90 16 13 C -0.16 -6.04 4.93 -11.54 -0.06 -6.10 16 14 H 0.13 4.30 6.51 -2.39 -0.02 4.28 16 15 C -0.13 -4.05 9.56 30.60 0.29 -3.76 16 16 C -0.09 -2.72 5.55 -11.54 -0.06 -2.78 16 17 H 0.11 3.81 7.67 -2.39 -0.02 3.79 16 18 C -0.04 -1.10 5.61 -19.87 -0.11 -1.21 16 19 C -0.12 -2.65 9.74 22.27 0.22 -2.43 16 20 C -0.10 -1.71 10.05 22.27 0.22 -1.49 16 21 C -0.12 -2.04 9.83 22.29 0.22 -1.82 16 22 C -0.04 -0.83 6.32 22.32 0.14 -0.69 16 23 Cl -0.07 -1.36 28.96 -2.72 -0.08 -1.44 16 24 C -0.12 -2.73 9.08 22.29 0.20 -2.52 16 25 H 0.04 2.03 7.85 -2.39 -0.02 2.01 16 26 H 0.06 2.76 6.78 -2.39 -0.02 2.75 16 27 H 0.06 2.33 6.22 -2.38 -0.01 2.32 16 28 H 0.27 13.70 8.31 -92.71 -0.77 12.93 16 29 H 0.13 3.13 6.18 -2.39 -0.01 3.11 16 30 H 0.09 2.98 8.14 -2.39 -0.02 2.96 16 31 H 0.13 2.87 8.06 -2.91 -0.02 2.85 16 32 H 0.16 1.78 8.06 -2.91 -0.02 1.76 16 33 H 0.15 1.93 8.06 -2.91 -0.02 1.90 16 34 H 0.14 2.99 6.02 -2.91 -0.02 2.97 16 Total: -1.00 -68.09 305.80 5.27 -62.82 By element: Atomic # 1 Polarization: 14.77 SS G_CDS: 1.12 Total: 15.90 kcal Atomic # 6 Polarization: -15.19 SS G_CDS: 4.00 Total: -11.19 kcal Atomic # 7 Polarization: -72.29 SS G_CDS: -1.75 Total: -74.04 kcal Atomic # 8 Polarization: -36.85 SS G_CDS: -0.05 Total: -36.90 kcal Atomic # 14 Polarization: 42.83 SS G_CDS: 2.03 Total: 44.86 kcal Atomic # 17 Polarization: -1.36 SS G_CDS: -0.08 Total: -1.44 kcal Total: -68.09 5.27 -62.82 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334384797.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.940 kcal (2) G-P(sol) polarization free energy of solvation -68.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.816 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds