Wall clock time and date at job start Wed Apr 15 2020 11:43:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86796 * 119.99930 * 2 1 4 4 H 1.48500 * 109.47407 * 270.00480 * 3 2 1 5 5 H 1.48499 * 109.47054 * 30.00496 * 3 2 1 6 6 H 1.48507 * 109.47204 * 150.00242 * 3 2 1 7 7 C 1.37874 * 120.00020 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99979 * 359.97438 * 7 2 1 9 9 C 1.50696 * 120.00242 * 179.97438 * 7 2 1 10 10 C 1.52999 * 109.47581 * 179.97438 * 9 7 2 11 11 C 1.50696 * 109.47581 * 180.02562 * 10 9 7 12 12 O 1.20833 * 119.99595 * 0.02562 * 11 10 9 13 13 O 1.34224 * 120.00302 * 180.02562 * 11 10 9 14 14 C 1.45206 * 117.00077 * 180.02562 * 13 11 10 15 15 C 1.50699 * 109.47021 * 180.02562 * 14 13 11 16 16 C 1.38236 * 120.00277 * 269.72923 * 15 14 13 17 17 C 1.38231 * 120.00348 * 179.76818 * 16 15 14 18 18 C 1.38237 * 119.99683 * 0.48298 * 17 16 15 19 19 N 1.48022 * 119.99922 * 179.76986 * 18 17 16 20 20 O 1.21796 * 120.00030 * 180.02562 * 19 18 17 21 21 O 1.21802 * 119.99960 * 0.02562 * 19 18 17 22 22 C 1.38226 * 120.00025 * 359.79098 * 18 17 16 23 23 C 1.38234 * 120.00461 * 359.95470 * 22 18 17 24 24 H 0.97002 * 119.99990 * 359.97438 * 1 2 3 25 25 H 1.09005 * 109.47017 * 59.99790 * 9 7 2 26 26 H 1.09000 * 109.47368 * 300.00765 * 9 7 2 27 27 H 1.09009 * 109.46302 * 60.00405 * 10 9 7 28 28 H 1.08995 * 109.47159 * 300.00733 * 10 9 7 29 29 H 1.09000 * 109.47070 * 300.00162 * 14 13 11 30 30 H 1.09001 * 109.46626 * 60.00180 * 14 13 11 31 31 H 1.08004 * 119.99728 * 359.97438 * 16 15 14 32 32 H 1.08003 * 120.00217 * 180.25414 * 17 16 15 33 33 H 1.08004 * 120.00431 * 179.97438 * 22 18 17 34 34 H 1.07993 * 120.00649 * 180.02562 * 23 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6526 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5114 -1.1941 -0.0011 10 6 4.0215 -2.6365 -0.0010 11 6 5.5284 -2.6366 -0.0009 12 8 6.1326 -1.5901 -0.0005 13 8 6.1996 -3.7990 -0.0014 14 6 7.6496 -3.7230 -0.0007 15 6 8.2256 -5.1156 -0.0019 16 6 8.4946 -5.7534 1.1946 17 6 9.0184 -7.0326 1.1936 18 6 9.2827 -7.6702 -0.0042 19 7 9.8484 -9.0381 -0.0054 20 8 10.0817 -9.5997 -1.0607 21 8 10.0806 -9.6020 1.0489 22 6 9.0191 -7.0303 -1.2007 23 6 8.4903 -5.7531 -1.1997 24 1 -0.4850 0.8401 0.0004 25 1 3.8751 -0.6804 0.8889 26 1 3.8745 -0.6800 -0.8910 27 1 3.6578 -3.1505 -0.8909 28 1 3.6584 -3.1502 0.8891 29 1 7.9860 -3.1903 -0.8902 30 1 7.9851 -3.1914 0.8898 31 1 8.2923 -5.2535 2.1304 32 1 9.2247 -7.5325 2.1284 33 1 9.2259 -7.5282 -2.1365 34 1 8.2839 -5.2532 -2.1344 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291343620.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:30 Heat of formation + Delta-G solvation = -73.006591 kcal Electronic energy + Delta-G solvation = -19994.109112 eV Core-core repulsion = 16474.347300 eV Total energy + Delta-G solvation = -3519.761813 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.098 amu Computer time = 1.68 seconds Orbital eigenvalues (eV) -42.51383 -40.57310 -39.73738 -36.89389 -36.57628 -33.75146 -33.26983 -31.94459 -31.52153 -28.71483 -26.64003 -25.13490 -23.72318 -22.35251 -21.77008 -20.00168 -19.76493 -18.99736 -17.86129 -17.74034 -17.11636 -16.74870 -16.49205 -15.71285 -15.45022 -14.95010 -14.40622 -14.20760 -13.87777 -13.77548 -13.06115 -12.73358 -12.64398 -12.29772 -12.05939 -11.86980 -11.57723 -11.50559 -11.46080 -11.11911 -10.80528 -10.47676 -10.32549 -10.20159 -9.95042 -9.90425 -9.75822 -9.35186 -8.63655 -6.14775 -4.15480 -0.63003 0.44769 0.87629 1.02628 2.46302 2.49453 3.09440 3.27502 3.35099 3.42533 3.85177 3.95461 4.01916 4.27650 4.38524 4.40632 4.75352 4.84143 4.93455 5.14879 5.19637 5.21900 5.22742 5.30787 5.67035 5.75149 5.85376 5.87109 6.05681 6.27889 6.55745 7.11963 7.19342 7.29010 7.61215 7.97256 8.37979 8.87068 9.46432 10.97716 Molecular weight = 279.10amu Principal moments of inertia in cm(-1) A = 0.045909 B = 0.002591 C = 0.002550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 609.752685 B =10802.934649 C =10979.361253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.071 3.929 3 Si 0.878 3.122 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.262 1.262 7 C -0.530 4.530 8 H 0.076 0.924 9 C -0.002 4.002 10 C -0.095 4.095 11 C 0.460 3.540 12 O -0.507 6.507 13 O -0.357 6.357 14 C 0.095 3.905 15 C -0.036 4.036 16 C -0.094 4.094 17 C -0.056 4.056 18 C -0.041 4.041 19 N 0.028 4.972 20 O -0.159 6.159 21 O -0.160 6.160 22 C -0.056 4.056 23 C -0.094 4.094 24 H 0.265 0.735 25 H 0.026 0.974 26 H 0.022 0.978 27 H 0.100 0.900 28 H 0.101 0.899 29 H 0.087 0.913 30 H 0.087 0.913 31 H 0.152 0.848 32 H 0.157 0.843 33 H 0.157 0.843 34 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.835 -12.929 0.026 23.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.131 4.131 3 Si 0.705 3.295 4 H -0.201 1.201 5 H -0.213 1.213 6 H -0.186 1.186 7 C -0.567 4.567 8 H 0.094 0.906 9 C -0.039 4.039 10 C -0.132 4.132 11 C 0.304 3.696 12 O -0.394 6.394 13 O -0.276 6.276 14 C 0.021 3.979 15 C -0.037 4.037 16 C -0.113 4.113 17 C -0.075 4.075 18 C -0.124 4.124 19 N 0.548 4.452 20 O -0.376 6.376 21 O -0.376 6.376 22 C -0.075 4.075 23 C -0.113 4.113 24 H 0.075 0.925 25 H 0.044 0.956 26 H 0.040 0.960 27 H 0.119 0.881 28 H 0.119 0.881 29 H 0.105 0.895 30 H 0.105 0.895 31 H 0.169 0.831 32 H 0.174 0.826 33 H 0.174 0.826 34 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 19.617 -11.833 0.030 22.909 hybrid contribution 0.631 0.584 -0.026 0.861 sum 20.248 -11.249 0.003 23.163 Atomic orbital electron populations 1.69898 1.06285 1.27164 1.50331 1.24957 0.94735 0.99224 0.94171 0.86799 0.80531 0.83417 0.78795 1.20141 1.21260 1.18643 1.21004 0.88745 0.94838 1.52140 0.90628 1.19492 0.97029 0.89441 0.97968 1.21591 0.82867 1.03725 1.05042 1.24868 0.92731 0.80702 0.71345 1.90644 1.70482 1.32948 1.45280 1.86647 1.19264 1.36667 1.84980 1.21779 0.79324 0.92334 1.04470 1.20098 0.94601 0.95459 0.93496 1.21203 0.97662 0.93368 0.99072 1.21080 0.94565 0.94555 0.97308 1.21207 1.09569 0.84384 0.97203 1.43639 0.98385 1.02737 1.00482 1.94547 1.55591 1.66846 1.20568 1.94549 1.55629 1.66675 1.20706 1.21077 0.94551 0.94553 0.97331 1.21202 0.97627 0.93409 0.99061 0.92513 0.95576 0.96014 0.88148 0.88126 0.89525 0.89521 0.83061 0.82564 0.82567 0.83063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.93 13.96 55.43 0.77 -26.16 16 2 C 0.07 2.02 5.47 -17.82 -0.10 1.93 16 3 Si 0.88 21.46 27.47 -169.99 -4.67 16.79 16 4 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 5 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 6 H -0.26 -6.30 6.54 56.52 0.37 -5.93 16 7 C -0.53 -14.41 9.66 -34.44 -0.33 -14.74 16 8 H 0.08 2.16 7.99 -52.49 -0.42 1.74 16 9 C 0.00 -0.04 3.33 -27.89 -0.09 -0.13 16 10 C -0.09 -1.70 5.75 -27.89 -0.16 -1.86 16 11 C 0.46 7.55 7.96 36.00 0.29 7.84 16 12 O -0.51 -9.67 15.73 -18.76 -0.30 -9.97 16 13 O -0.36 -4.70 10.20 -39.24 -0.40 -5.10 16 14 C 0.09 0.92 5.59 36.01 0.20 1.12 16 15 C -0.04 -0.29 5.52 -104.62 -0.58 -0.86 16 16 C -0.09 -0.66 9.70 -39.58 -0.38 -1.04 16 17 C -0.06 -0.42 9.56 -39.58 -0.38 -0.80 16 18 C -0.04 -0.37 6.85 -79.95 -0.55 -0.92 16 19 N 0.03 0.31 4.45 33.96 0.15 0.46 16 20 O -0.16 -1.89 18.45 -29.46 -0.54 -2.44 16 21 O -0.16 -1.89 18.45 -29.46 -0.54 -2.44 16 22 C -0.06 -0.42 9.55 -39.59 -0.38 -0.80 16 23 C -0.09 -0.66 9.70 -39.58 -0.38 -1.04 16 24 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 25 H 0.03 0.62 7.16 -51.93 -0.37 0.25 16 26 H 0.02 0.51 7.53 -51.93 -0.39 0.12 16 27 H 0.10 1.66 8.14 -51.92 -0.42 1.24 16 28 H 0.10 1.67 8.14 -51.93 -0.42 1.25 16 29 H 0.09 0.78 8.08 -51.93 -0.42 0.36 16 30 H 0.09 0.78 8.08 -51.93 -0.42 0.36 16 31 H 0.15 0.78 8.06 -52.48 -0.42 0.35 16 32 H 0.16 0.94 7.61 -52.48 -0.40 0.54 16 33 H 0.16 0.94 7.61 -52.48 -0.40 0.54 16 34 H 0.15 0.78 8.06 -52.49 -0.42 0.35 16 LS Contribution 312.87 15.07 4.71 4.71 Total: -1.00 -32.56 312.87 -7.33 -39.90 By element: Atomic # 1 Polarization: -0.78 SS G_CDS: -3.68 Total: -4.46 kcal Atomic # 6 Polarization: -8.47 SS G_CDS: -2.85 Total: -11.31 kcal Atomic # 7 Polarization: -26.62 SS G_CDS: 0.92 Total: -25.69 kcal Atomic # 8 Polarization: -18.16 SS G_CDS: -1.78 Total: -19.94 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -4.67 Total: 16.79 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -32.56 -7.33 -39.90 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291343620.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.108 kcal (2) G-P(sol) polarization free energy of solvation -32.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.898 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.68 seconds