Wall clock time and date at job start Wed Apr 15 2020 11:43:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86796 * 119.99930 * 2 1 4 4 H 1.48500 * 109.47407 * 270.00480 * 3 2 1 5 5 H 1.48499 * 109.47054 * 30.00496 * 3 2 1 6 6 H 1.48507 * 109.47204 * 150.00242 * 3 2 1 7 7 C 1.37874 * 120.00020 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99979 * 359.97438 * 7 2 1 9 9 C 1.50696 * 120.00242 * 179.97438 * 7 2 1 10 10 C 1.52999 * 109.47581 * 179.97438 * 9 7 2 11 11 C 1.50696 * 109.47581 * 180.02562 * 10 9 7 12 12 O 1.20833 * 119.99595 * 0.02562 * 11 10 9 13 13 O 1.34224 * 120.00302 * 180.02562 * 11 10 9 14 14 C 1.45206 * 117.00077 * 180.02562 * 13 11 10 15 15 C 1.50699 * 109.47021 * 180.02562 * 14 13 11 16 16 C 1.38236 * 120.00277 * 269.72923 * 15 14 13 17 17 C 1.38231 * 120.00348 * 179.76818 * 16 15 14 18 18 C 1.38237 * 119.99683 * 0.48298 * 17 16 15 19 19 N 1.48022 * 119.99922 * 179.76986 * 18 17 16 20 20 O 1.21796 * 120.00030 * 180.02562 * 19 18 17 21 21 O 1.21802 * 119.99960 * 0.02562 * 19 18 17 22 22 C 1.38226 * 120.00025 * 359.79098 * 18 17 16 23 23 C 1.38234 * 120.00461 * 359.95470 * 22 18 17 24 24 H 0.97002 * 119.99990 * 359.97438 * 1 2 3 25 25 H 1.09005 * 109.47017 * 59.99790 * 9 7 2 26 26 H 1.09000 * 109.47368 * 300.00765 * 9 7 2 27 27 H 1.09009 * 109.46302 * 60.00405 * 10 9 7 28 28 H 1.08995 * 109.47159 * 300.00733 * 10 9 7 29 29 H 1.09000 * 109.47070 * 300.00162 * 14 13 11 30 30 H 1.09001 * 109.46626 * 60.00180 * 14 13 11 31 31 H 1.08004 * 119.99728 * 359.97438 * 16 15 14 32 32 H 1.08003 * 120.00217 * 180.25414 * 17 16 15 33 33 H 1.08004 * 120.00431 * 179.97438 * 22 18 17 34 34 H 1.07993 * 120.00649 * 180.02562 * 23 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6526 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5114 -1.1941 -0.0011 10 6 4.0215 -2.6365 -0.0010 11 6 5.5284 -2.6366 -0.0009 12 8 6.1326 -1.5901 -0.0005 13 8 6.1996 -3.7990 -0.0014 14 6 7.6496 -3.7230 -0.0007 15 6 8.2256 -5.1156 -0.0019 16 6 8.4946 -5.7534 1.1946 17 6 9.0184 -7.0326 1.1936 18 6 9.2827 -7.6702 -0.0042 19 7 9.8484 -9.0381 -0.0054 20 8 10.0817 -9.5997 -1.0607 21 8 10.0806 -9.6020 1.0489 22 6 9.0191 -7.0303 -1.2007 23 6 8.4903 -5.7531 -1.1997 24 1 -0.4850 0.8401 0.0004 25 1 3.8751 -0.6804 0.8889 26 1 3.8745 -0.6800 -0.8910 27 1 3.6578 -3.1505 -0.8909 28 1 3.6584 -3.1502 0.8891 29 1 7.9860 -3.1903 -0.8902 30 1 7.9851 -3.1914 0.8898 31 1 8.2923 -5.2535 2.1304 32 1 9.2247 -7.5325 2.1284 33 1 9.2259 -7.5282 -2.1365 34 1 8.2839 -5.2532 -2.1344 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000291343620.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:29 Heat of formation + Delta-G solvation = -90.669021 kcal Electronic energy + Delta-G solvation = -19994.875013 eV Core-core repulsion = 16474.347300 eV Total energy + Delta-G solvation = -3520.527713 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.098 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -43.31189 -41.64792 -40.51142 -37.74116 -37.73819 -35.63043 -34.04461 -33.37303 -32.50387 -29.64285 -28.23380 -26.05599 -24.28662 -23.76991 -22.68800 -21.47018 -20.46811 -19.81442 -19.37666 -18.66508 -18.42545 -17.76250 -17.69210 -16.53867 -16.36591 -16.16402 -15.73303 -15.22859 -14.86672 -14.82789 -14.45535 -14.02792 -13.90834 -13.46199 -13.02324 -12.93008 -12.81376 -12.56922 -12.35493 -12.35163 -12.23264 -12.02382 -11.82329 -11.74503 -11.51777 -11.41348 -10.78654 -10.63695 -10.44667 -8.31467 -6.35996 -1.38519 -0.09145 0.10701 0.29872 1.18861 1.35369 1.37891 1.50460 1.59527 2.32785 2.34811 3.04285 3.24809 3.29367 3.44796 3.66423 3.81955 3.95326 4.19330 4.24068 4.28258 4.39054 4.40250 4.63138 4.64761 4.69491 4.85464 5.07993 5.08981 5.23017 5.32515 5.37546 5.38090 5.59154 6.21290 6.40754 6.68661 6.77774 7.29423 8.84099 Molecular weight = 279.10amu Principal moments of inertia in cm(-1) A = 0.045909 B = 0.002591 C = 0.002550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 609.752685 B =10802.934649 C =10979.361253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.944 5.944 2 C 0.012 3.988 3 Si 0.940 3.060 4 H -0.268 1.268 5 H -0.282 1.282 6 H -0.254 1.254 7 C -0.532 4.532 8 H 0.050 0.950 9 C 0.001 3.999 10 C -0.093 4.093 11 C 0.475 3.525 12 O -0.536 6.536 13 O -0.352 6.352 14 C 0.091 3.909 15 C -0.041 4.041 16 C -0.089 4.089 17 C -0.056 4.056 18 C -0.055 4.055 19 N 0.029 4.971 20 O -0.178 6.178 21 O -0.178 6.178 22 C -0.056 4.056 23 C -0.089 4.089 24 H 0.268 0.732 25 H 0.019 0.981 26 H 0.018 0.982 27 H 0.114 0.886 28 H 0.113 0.887 29 H 0.096 0.904 30 H 0.096 0.904 31 H 0.172 0.828 32 H 0.168 0.832 33 H 0.168 0.832 34 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.372 -12.536 -0.004 24.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.186 4.186 3 Si 0.765 3.235 4 H -0.193 1.193 5 H -0.208 1.208 6 H -0.178 1.178 7 C -0.570 4.570 8 H 0.068 0.932 9 C -0.037 4.037 10 C -0.130 4.130 11 C 0.320 3.680 12 O -0.425 6.425 13 O -0.269 6.269 14 C 0.018 3.982 15 C -0.041 4.041 16 C -0.108 4.108 17 C -0.075 4.075 18 C -0.138 4.138 19 N 0.544 4.456 20 O -0.391 6.391 21 O -0.392 6.392 22 C -0.075 4.075 23 C -0.108 4.108 24 H 0.077 0.923 25 H 0.037 0.963 26 H 0.036 0.964 27 H 0.132 0.868 28 H 0.132 0.868 29 H 0.114 0.886 30 H 0.114 0.886 31 H 0.190 0.810 32 H 0.186 0.814 33 H 0.186 0.814 34 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges 21.180 -11.493 -0.001 24.097 hybrid contribution 0.161 0.378 -0.017 0.411 sum 21.341 -11.115 -0.018 24.062 Atomic orbital electron populations 1.70027 1.07975 1.28206 1.52203 1.25838 0.95499 1.03047 0.94172 0.85799 0.79386 0.79158 0.79202 1.19296 1.20763 1.17830 1.21357 0.91098 0.93796 1.50740 0.93188 1.19332 0.94180 0.92883 0.97256 1.21347 0.84659 1.00553 1.06470 1.24228 0.92065 0.80991 0.70761 1.90641 1.70952 1.34087 1.46821 1.86584 1.21514 1.34598 1.84189 1.22059 0.76912 0.93697 1.05569 1.20069 0.95050 0.94782 0.94239 1.21427 0.96678 0.92927 0.99727 1.21269 0.94175 0.94722 0.97355 1.21442 1.10564 0.83276 0.98515 1.43960 0.98018 1.03499 1.00095 1.94531 1.56281 1.67658 1.20672 1.94532 1.56323 1.67491 1.20809 1.21267 0.94160 0.94715 0.97380 1.21427 0.96646 0.92968 0.99713 0.92345 0.96278 0.96392 0.86824 0.86850 0.88556 0.88568 0.81046 0.81404 0.81403 0.81047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.30 13.96 21.45 0.30 -57.00 16 2 C 0.01 0.70 5.47 84.65 0.46 1.16 16 3 Si 0.94 43.91 27.47 68.60 1.88 45.80 16 4 H -0.27 -12.08 7.11 99.48 0.71 -11.38 16 5 H -0.28 -12.84 7.11 99.48 0.71 -12.14 16 6 H -0.25 -11.47 6.54 99.48 0.65 -10.82 16 7 C -0.53 -29.00 9.66 25.60 0.25 -28.76 16 8 H 0.05 2.90 7.99 -2.91 -0.02 2.88 16 9 C 0.00 0.05 3.33 29.85 0.10 0.15 16 10 C -0.09 -3.16 5.75 29.85 0.17 -2.99 16 11 C 0.47 14.44 7.96 71.23 0.57 15.00 16 12 O -0.54 -19.24 15.73 21.94 0.35 -18.90 16 13 O -0.35 -8.18 10.20 -51.35 -0.52 -8.70 16 14 C 0.09 1.47 5.59 71.24 0.40 1.87 16 15 C -0.04 -0.52 5.52 -19.87 -0.11 -0.63 16 16 C -0.09 -0.99 9.70 22.27 0.22 -0.77 16 17 C -0.06 -0.72 9.56 22.27 0.21 -0.51 16 18 C -0.06 -0.90 6.85 36.37 0.25 -0.66 16 19 N 0.03 0.63 4.45 -46.47 -0.21 0.42 16 20 O -0.18 -4.16 18.45 18.89 0.35 -3.81 16 21 O -0.18 -4.17 18.45 18.88 0.35 -3.82 16 22 C -0.06 -0.72 9.55 22.27 0.21 -0.51 16 23 C -0.09 -0.99 9.70 22.27 0.22 -0.77 16 24 H 0.27 15.19 8.31 -92.71 -0.77 14.42 16 25 H 0.02 0.88 7.16 -2.38 -0.02 0.86 16 26 H 0.02 0.81 7.53 -2.39 -0.02 0.79 16 27 H 0.11 3.55 8.14 -2.38 -0.02 3.53 16 28 H 0.11 3.55 8.14 -2.39 -0.02 3.53 16 29 H 0.10 1.43 8.08 -2.39 -0.02 1.41 16 30 H 0.10 1.43 8.08 -2.39 -0.02 1.41 16 31 H 0.17 1.17 8.06 -2.91 -0.02 1.15 16 32 H 0.17 1.72 7.61 -2.91 -0.02 1.69 16 33 H 0.17 1.71 7.61 -2.91 -0.02 1.69 16 34 H 0.17 1.17 8.06 -2.91 -0.02 1.15 16 Total: -1.00 -69.75 312.87 6.51 -63.25 By element: Atomic # 1 Polarization: -0.88 SS G_CDS: 1.07 Total: 0.19 kcal Atomic # 6 Polarization: -20.36 SS G_CDS: 2.94 Total: -17.41 kcal Atomic # 7 Polarization: -56.68 SS G_CDS: 0.09 Total: -56.58 kcal Atomic # 8 Polarization: -35.75 SS G_CDS: 0.52 Total: -35.24 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 1.88 Total: 45.80 kcal Total: -69.75 6.51 -63.25 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291343620.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.420 kcal (2) G-P(sol) polarization free energy of solvation -69.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.249 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds