Wall clock time and date at job start Wed Apr 15 2020 11:43:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31407 * 1 3 3 Si 1.86799 * 120.00283 * 2 1 4 4 H 1.48500 * 109.47360 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47026 * 299.99672 * 3 2 1 6 6 H 1.48499 * 109.47127 * 59.99462 * 3 2 1 7 7 C 1.38950 * 119.99813 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99984 * 180.02562 * 7 2 1 9 9 N 1.37098 * 120.00257 * 0.02562 * 7 2 1 10 10 C 1.34779 * 120.00025 * 180.02562 * 9 7 2 11 11 O 1.21291 * 119.99858 * 359.97438 * 10 9 7 12 12 C 1.50701 * 119.99692 * 180.02562 * 10 9 7 13 13 O 1.45198 * 109.46672 * 179.97438 * 12 10 9 14 14 C 1.34718 * 116.99471 * 179.97438 * 13 12 10 15 15 O 1.21462 * 119.99993 * 0.02562 * 14 13 12 16 16 C 1.47729 * 119.99739 * 180.02562 * 14 13 12 17 17 C 1.39654 * 120.14767 * 359.97438 * 16 14 13 18 18 C 1.37920 * 119.84574 * 180.02562 * 17 16 14 19 19 C 1.38397 * 120.14862 * 359.72552 * 18 17 16 20 20 C 1.38345 * 120.30102 * 0.54802 * 19 18 17 21 21 C 1.50699 * 119.92221 * 179.72843 * 20 19 18 22 22 O 1.42903 * 109.47152 * 269.73008 * 21 20 19 23 23 C 1.37963 * 120.15046 * 359.45253 * 20 19 18 24 24 H 0.97001 * 120.00137 * 0.02562 * 1 2 3 25 25 H 0.97000 * 119.99384 * 359.97438 * 9 7 2 26 26 H 1.08995 * 109.47042 * 59.99453 * 12 10 9 27 27 H 1.08996 * 109.47140 * 299.99395 * 12 10 9 28 28 H 1.07997 * 120.07821 * 359.97438 * 17 16 14 29 29 H 1.07999 * 119.92819 * 180.02562 * 18 17 16 30 30 H 1.08005 * 119.84423 * 180.27622 * 19 18 17 31 31 H 1.08997 * 109.47198 * 149.72686 * 21 20 19 32 32 H 1.09008 * 109.47393 * 29.72402 * 21 20 19 33 33 H 0.96700 * 114.00311 * 180.02562 * 22 21 20 34 34 H 1.08004 * 120.07082 * 180.24957 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.7081 1.3463 -0.0006 5 1 1.8895 2.3964 -1.2126 6 1 1.8893 2.3965 1.2124 7 6 2.0088 -1.2034 0.0005 8 1 3.0889 -1.2034 0.0010 9 7 1.3233 -2.3907 0.0005 10 6 1.9972 -3.5579 0.0016 11 8 3.2101 -3.5578 0.0021 12 6 1.2436 -4.8630 0.0010 13 8 2.1872 -5.9666 0.0017 14 6 1.6722 -7.2114 0.0019 15 8 0.4681 -7.3705 0.0009 16 6 2.5721 -8.3830 0.0032 17 6 3.9571 -8.2036 0.0037 18 6 4.7914 -9.3018 0.0044 19 6 4.2590 -10.5792 0.0103 20 6 2.8880 -10.7641 0.0041 21 6 2.3175 -12.1589 0.0044 22 8 2.1378 -12.6003 -1.3429 23 6 2.0419 -9.6744 0.0034 24 1 -0.4850 0.8400 -0.0004 25 1 0.3533 -2.3906 0.0005 26 1 0.6180 -4.9208 -0.8896 27 1 0.6161 -4.9205 0.8903 28 1 4.3738 -7.2073 0.0028 29 1 5.8627 -9.1646 0.0053 30 1 4.9170 -11.4357 0.0153 31 1 1.3560 -12.1581 0.5178 32 1 3.0035 -12.8320 0.5187 33 1 1.7725 -13.4924 -1.4191 34 1 0.9717 -9.8202 0.0026 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000731243986.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:39 Heat of formation + Delta-G solvation = -145.348660 kcal Electronic energy + Delta-G solvation = -20231.096299 eV Core-core repulsion = 16708.197499 eV Total energy + Delta-G solvation = -3522.898800 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.098 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.52628 -39.23848 -38.06941 -36.87776 -36.05125 -33.99923 -32.20016 -31.45742 -31.34314 -28.42503 -26.27765 -24.98794 -23.94341 -21.99089 -20.59482 -19.57686 -18.07111 -17.85067 -17.73010 -16.90609 -16.28112 -16.22125 -15.62973 -15.52923 -14.87089 -14.44894 -14.11381 -14.04194 -13.91222 -13.85168 -13.06129 -12.93849 -12.45959 -12.18868 -12.10253 -11.74798 -11.62232 -11.24818 -11.15035 -10.51767 -10.41645 -10.41092 -10.38787 -10.29218 -9.61487 -9.23117 -9.15219 -8.52271 -8.08145 -6.49790 -3.91758 0.56694 1.06302 2.52452 2.67422 3.12034 3.24145 3.31671 3.52167 3.74221 4.08868 4.12164 4.49303 4.56966 4.65386 4.83191 4.88387 4.98290 5.07332 5.15485 5.16283 5.32123 5.50306 5.63355 5.70563 5.71387 6.04191 6.12880 6.17370 6.20752 6.58364 6.61707 7.23388 7.48253 7.83486 7.96400 8.48685 9.07376 9.39655 9.89370 10.67572 Molecular weight = 279.10amu Principal moments of inertia in cm(-1) A = 0.046637 B = 0.002866 C = 0.002726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 600.231199 B = 9766.813593 C =10269.695238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.024 3.976 3 Si 0.933 3.067 4 H -0.267 1.267 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.301 4.301 8 H 0.107 0.893 9 N -0.553 5.553 10 C 0.439 3.561 11 O -0.576 6.576 12 C 0.061 3.939 13 O -0.321 6.321 14 C 0.505 3.495 15 O -0.511 6.511 16 C -0.122 4.122 17 C -0.050 4.050 18 C -0.136 4.136 19 C -0.067 4.067 20 C -0.113 4.113 21 C 0.120 3.880 22 O -0.567 6.567 23 C -0.035 4.035 24 H 0.273 0.727 25 H 0.395 0.605 26 H 0.088 0.912 27 H 0.088 0.912 28 H 0.148 0.852 29 H 0.135 0.865 30 H 0.128 0.872 31 H 0.058 0.942 32 H 0.057 0.943 33 H 0.381 0.619 34 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.597 -22.363 0.989 22.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.178 4.178 3 Si 0.760 3.240 4 H -0.191 1.191 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.431 4.431 8 H 0.124 0.876 9 N -0.190 5.190 10 C 0.224 3.776 11 O -0.460 6.460 12 C -0.016 4.016 13 O -0.235 6.235 14 C 0.350 3.650 15 O -0.402 6.402 16 C -0.123 4.123 17 C -0.068 4.068 18 C -0.153 4.153 19 C -0.085 4.085 20 C -0.113 4.113 21 C 0.042 3.958 22 O -0.373 6.373 23 C -0.054 4.054 24 H 0.083 0.917 25 H 0.229 0.771 26 H 0.106 0.894 27 H 0.106 0.894 28 H 0.165 0.835 29 H 0.153 0.847 30 H 0.146 0.854 31 H 0.076 0.924 32 H 0.075 0.925 33 H 0.228 0.772 34 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 4.166 -21.599 0.867 22.014 hybrid contribution -0.712 0.379 0.148 0.820 sum 3.454 -21.220 1.015 21.523 Atomic orbital electron populations 1.69621 1.06011 1.28386 1.49754 1.25318 0.95691 0.99886 0.96920 0.85739 0.79706 0.80742 0.77802 1.19084 1.20620 1.20620 1.19777 0.93500 0.81727 1.48047 0.87552 1.41710 1.09394 1.04086 1.63827 1.19300 0.88322 0.84043 0.85931 1.90556 1.13397 1.86795 1.55262 1.22778 0.90836 0.84389 1.03641 1.86583 1.40016 1.13853 1.83034 1.21187 0.87110 0.83784 0.72966 1.90811 1.16050 1.86979 1.46315 1.19124 0.93259 0.90998 1.08933 1.21742 0.91967 1.00743 0.92385 1.21196 1.00500 0.91941 1.01712 1.21315 0.94342 0.97646 0.95230 1.19489 0.93566 0.94187 1.04048 1.20941 0.99312 0.91574 0.83930 1.86587 1.87501 1.36975 1.26262 1.21129 1.00684 0.90056 0.93505 0.91673 0.77138 0.89407 0.89411 0.83459 0.84744 0.85387 0.92420 0.92476 0.77221 0.84424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.18 13.05 55.50 0.72 -23.46 16 2 C 0.02 0.64 5.50 -17.47 -0.10 0.55 16 3 Si 0.93 20.76 29.55 -169.99 -5.02 15.74 16 4 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 5 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 6 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 7 C -0.30 -8.34 9.68 -14.93 -0.14 -8.49 16 8 H 0.11 3.07 7.16 -52.48 -0.38 2.70 16 9 N -0.55 -14.07 5.29 -10.96 -0.06 -14.13 16 10 C 0.44 10.68 7.86 -10.98 -0.09 10.59 16 11 O -0.58 -16.01 16.08 -14.11 -0.23 -16.24 16 12 C 0.06 1.19 5.95 36.01 0.21 1.41 16 13 O -0.32 -6.18 9.01 -47.22 -0.43 -6.61 16 14 C 0.50 8.70 7.90 34.61 0.27 8.98 16 15 O -0.51 -9.50 16.14 -19.24 -0.31 -9.81 16 16 C -0.12 -1.74 5.87 -104.98 -0.62 -2.36 16 17 C -0.05 -0.64 9.62 -39.17 -0.38 -1.02 16 18 C -0.14 -1.36 10.03 -39.64 -0.40 -1.76 16 19 C -0.07 -0.62 9.69 -39.48 -0.38 -1.01 16 20 C -0.11 -1.16 5.50 -104.68 -0.58 -1.74 16 21 C 0.12 0.89 7.17 36.01 0.26 1.15 16 22 O -0.57 -4.76 13.64 -35.23 -0.48 -5.24 16 23 C -0.04 -0.44 9.24 -39.17 -0.36 -0.80 16 24 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 25 H 0.39 9.54 7.90 -40.82 -0.32 9.21 16 26 H 0.09 1.57 8.14 -51.93 -0.42 1.14 16 27 H 0.09 1.56 8.14 -51.93 -0.42 1.13 16 28 H 0.15 1.96 7.61 -52.49 -0.40 1.56 16 29 H 0.13 1.01 8.06 -52.49 -0.42 0.59 16 30 H 0.13 0.84 8.06 -52.48 -0.42 0.42 16 31 H 0.06 0.36 8.08 -51.93 -0.42 -0.06 16 32 H 0.06 0.30 8.08 -51.92 -0.42 -0.12 16 33 H 0.38 1.23 9.12 45.56 0.42 1.65 16 34 H 0.14 1.66 7.65 -52.48 -0.40 1.26 16 LS Contribution 314.40 15.07 4.74 4.74 Total: -1.00 -34.30 314.40 -6.10 -40.41 By element: Atomic # 1 Polarization: 11.85 SS G_CDS: -2.75 Total: 9.10 kcal Atomic # 6 Polarization: 7.80 SS G_CDS: -2.29 Total: 5.51 kcal Atomic # 7 Polarization: -38.26 SS G_CDS: 0.67 Total: -37.59 kcal Atomic # 8 Polarization: -36.46 SS G_CDS: -1.44 Total: -37.90 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -34.30 -6.10 -40.41 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731243986.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.940 kcal (2) G-P(sol) polarization free energy of solvation -34.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.408 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds